Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006614 Camellia sinensis var. sinensis HOM05D006677 ORTHO05D008348 0.0e+00 1556.2 767 100.0
CSS0025591 Camellia sinensis var. sinensis HOM05D006677 ORTHO05D008348 0.0e+00 1531.9 780 97.8
Hma1.2p1_0316F.1_g122840 Hydrangea macrophylla HOM05D006677 ORTHO05D008348 0.0e+00 1107.0 796 71.1
vmacro14066 Vaccinium macrocarpon HOM05D006677 ORTHO05D008348 0.0e+00 1104.7 796 71.6
Rhsim07G0111300 Rhododendron simsii HOM05D006677 ORTHO05D008348 0.0e+00 1096.3 799 70.3
Rhsim07G0110800 Rhododendron simsii HOM05D006677 ORTHO05D008348 0.0e+00 1084.3 820 68.7
Lj2C223G6 Lonicera japonica HOM05D006677 ORTHO05D008348 2.9e-300 1035.0 789 67.4
Nitab4.5_0001381g0100 Nicotiana tabacum HOM05D006677 ORTHO05D008348 6.4e-300 1033.9 795 64.9
Peaxi162Scf00209g00130 Petunia axillaris HOM05D006677 ORTHO05D008348 1.6e-295 1019.2 791 64.9
Sopen08g026930 Solanum pennellii HOM05D006677 ORTHO05D008348 6.2e-295 1017.3 789 65.1
Solyc08g078440.3 Solanum lycopersicum HOM05D006677 ORTHO05D008348 4.0e-294 1014.6 789 65.3
CAN.G1178.20 Capsicum annuum HOM05D006677 ORTHO05D008348 4.1e-291 1004.6 793 63.8
CANSAT21G0792 Cannabis sativa HOM05D006677 ORTHO05D008348 1.5e-288 996.1 808 61.6
COL.COLO4_37128 Corchorus olitorius HOM05D006677 ORTHO05D008348 3.4e-285 984.9 794 62.8
TAR374G0600 Trochodendron aralioides HOM05D006677 ORTHO05D008348 9.8e-285 983.4 798 63.8
Cc08_g12180 Coffea canephora HOM05D006677 ORTHO05D008348 1.1e-280 969.9 781 60.9
Thecc.03G248200 Theobroma cacao HOM05D006677 ORTHO05D008348 1.8e-278 962.6 795 61.9
Nitab4.5_0002289g0120 Nicotiana tabacum HOM05D006677 ORTHO05D008348 2.3e-278 962.2 796 61.9
Dinv21656 Davidia involucrata HOM05D006677 ORTHO05D008348 8.9e-278 960.3 630 76.8
MD06G1053300 Malus domestica HOM05D006677 ORTHO05D008348 2.0e-277 959.1 809 60.9
Gorai.008G233700 Gossypium raimondii HOM05D006677 ORTHO05D008348 3.2e-275 951.8 794 61.1
Prupe.5G065400 Prunus persica HOM05D006677 ORTHO05D008348 7.8e-274 947.2 809 60.8
Duzib068G0477 Durio zibethinus HOM05D006677 ORTHO05D008348 1.7e-273 946.0 794 60.8
Gohir.D12G218100 Gossypium hirsutum HOM05D006677 ORTHO05D008348 1.7e-273 946.0 794 60.7
Actinidia26803 Actinidia chinensis HOM05D006677 ORTHO05D008348 2.5e-272 942.2 635 75.0
MD04G1060300 Malus domestica HOM05D006677 ORTHO05D008348 4.3e-272 941.4 809 61.1
Cfa012688 Carpinus fangiana HOM05D006677 ORTHO05D008348 5.6e-272 941.0 792 61.9
Atru.chr9.1276 Acer truncatum HOM05D006677 ORTHO05D008348 6.2e-271 937.6 797 61.1
QL12p011426 Quercus lobata HOM05D006677 ORTHO05D008348 5.2e-270 934.5 849 57.6
PGR031G0681 Punica granatum HOM05D006677 ORTHO05D008348 4.4e-269 931.4 801 59.1
Migut.A01134 Erythranthe guttata HOM05D006677 ORTHO05D008348 5.8e-269 931.0 800 59.5
MSTRG.12123 Avicennia marina HOM05D006677 ORTHO05D008348 7.6e-269 930.6 784 60.3
Gohir.A12G215500 Gossypium hirsutum HOM05D006677 ORTHO05D008348 3.8e-268 928.3 794 60.1
Manes.02G041400 Manihot esculenta HOM05D006677 ORTHO05D008348 3.8e-268 928.3 794 59.8
CiPaw.12G050300 Carya illinoinensis HOM05D006677 ORTHO05D008348 2.4e-267 925.6 796 60.4
DCAR_004989 Daucus carota HOM05D006677 ORTHO05D008348 4.2e-267 924.9 786 59.3
Sc22g0000980 Simmondsia chinensis HOM05D006677 ORTHO05D008348 4.2e-267 924.9 782 59.8
SGA_v2.0_scaffold104G30177 Striga asiatica HOM05D006677 ORTHO05D008348 4.2e-267 924.9 812 58.0
AUR62007111 Chenopodium quinoa HOM05D006677 ORTHO05D008348 7.1e-267 924.1 784 59.1
Ciclev10018892m.g Citrus clementina HOM05D006677 ORTHO05D008348 1.2e-266 923.3 808 59.4
Haze_07944 Corylus avellana HOM05D006677 ORTHO05D008348 1.6e-266 922.9 863 57.1
RcHm_v2.0_Chr7g0203921 Rosa chinensis HOM05D006677 ORTHO05D008348 4.6e-266 921.4 784 59.6
AUR62019973 Chenopodium quinoa HOM05D006677 ORTHO05D008348 2.5e-264 915.6 784 58.7
FAN13G0013 Fragaria x ananassa HOM05D006677 ORTHO05D008348 4.3e-264 914.8 793 59.1
FAN04G1892 Fragaria x ananassa HOM05D006677 ORTHO05D008348 2.1e-263 912.5 794 58.8
Nn6g33880 Nelumbo nucifera HOM05D006677 ORTHO05D008348 3.6e-263 911.8 799 59.2
TWI60G0317 Tripterygium wilfordii HOM05D006677 ORTHO05D008348 4.8e-263 911.4 790 59.0
Hund14577 Selenicereus undatus HOM05D006677 ORTHO05D008348 1.1e-262 910.2 786 58.8
EL10Ac5g12357 Beta vulgaris HOM05D006677 ORTHO05D008348 6.9e-262 907.5 784 58.3
FAN08G3018 Fragaria x ananassa HOM05D006677 ORTHO05D008348 2.6e-261 905.6 794 58.8
FvH4_5g19410 Fragaria vesca HOM05D006677 ORTHO05D008348 5.8e-261 904.4 794 58.7
Aqoxy7G00821 Aquilegia oxysepala HOM05D006677 ORTHO05D008348 7.6e-261 904.0 800 57.9
Potri.001G155800 Populus trichocarpa HOM05D006677 ORTHO05D008348 9.9e-261 903.7 798 58.8
Duzib205G2017 Durio zibethinus HOM05D006677 ORTHO05D008348 1.3e-260 903.3 794 58.3
FAN18G1193 Fragaria x ananassa HOM05D006677 ORTHO05D008348 1.7e-260 902.9 794 58.6
HanXRQChr16g0501081 Helianthus annuus HOM05D006677 ORTHO05D008348 4.2e-259 898.3 789 58.3
SalBow6G5281 Salvia bowleyana HOM05D006677 ORTHO05D008348 4.2e-259 898.3 847 55.3
Ah.12g054330 Amaranthus hybridus HOM05D006677 ORTHO05D008348 5.3e-254 881.3 789 56.9
arahy.Tifrunner.gnm1.ann1.IBE8NF Arachis hypogaea HOM05D006677 ORTHO05D008348 3.5e-250 868.6 806 55.3
arahy.Tifrunner.gnm1.ann1.WU4RWF Arachis hypogaea HOM05D006677 ORTHO05D008348 6.0e-250 867.8 806 55.1
Lj4g0000262 Lotus japonicus HOM05D006677 ORTHO05D008348 7.4e-248 860.9 790 55.9
THA.LOC104806670 Tarenaya hassleriana HOM05D006677 ORTHO05D008348 7.4e-248 860.9 794 55.4
Lsat_1_v5_gn_6_18041 Lactuca sativa HOM05D006677 ORTHO05D008348 3.1e-246 855.5 789 56.7
Lalb_Chr05g0221161 Lupinus albus HOM05D006677 ORTHO05D008348 7.9e-242 840.9 786 55.6
AL8G10640 Arabidopsis lyrata HOM05D006677 ORTHO05D008348 3.9e-241 838.6 802 53.6
Ca_21980_v3 Cicer arietinum L. HOM05D006677 ORTHO05D008348 5.1e-241 838.2 797 54.8
Manes.01G083200 Manihot esculenta HOM05D006677 ORTHO05D008348 5.7e-240 834.7 801 55.2
CARHR173970 Cardamine hirsuta HOM05D006677 ORTHO05D008348 6.9e-238 827.8 803 52.6
ECA233G6125 Erigeron canadensis HOM05D006677 ORTHO05D008348 7.6e-237 824.3 741 58.7
HanXRQChr08g0227751 Helianthus annuus HOM05D006677 ORTHO05D008348 8.4e-236 820.8 793 55.0
Oeu017057.2 Olea europaea HOM05D006677 ORTHO05D008348 4.2e-235 818.5 817 55.8
AT5G47400 Arabidopsis thaliana HOM05D006677 ORTHO05D008348 5.5e-235 818.1 806 52.7
Carub.0008s0038 Capsella rubella HOM05D006677 ORTHO05D008348 5.5e-235 818.1 799 52.7
Glyma.17G143800 Glycine max HOM05D006677 ORTHO05D008348 1.2e-234 817.0 797 54.7
Thhalv10000783m.g Eutrema salsugineum HOM05D006677 ORTHO05D008348 6.1e-234 814.7 801 52.4
Sp2g12115 Schrenkiella parvula HOM05D006677 ORTHO05D008348 5.7e-232 808.1 803 51.8
BcaC06g34255 Brassica carinata HOM05D006677 ORTHO05D008348 2.8e-231 805.8 805 52.2
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 9.0e-230 800.8 797 52.2
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 1.5e-229 800.0 797 52.2
Medtr4g100700 Medicago truncatula HOM05D006677 ORTHO05D008348 1.5e-229 800.0 798 53.1
Phvul.003G222500 Phaseolus vulgaris HOM05D006677 ORTHO05D008348 1.8e-225 786.6 787 54.3
A06p45110 Brassica napus HOM05D006677 ORTHO05D008348 2.0e-224 783.1 800 51.4
VMungo0251G0668 Vigna mungo HOM05D006677 ORTHO05D008348 2.5e-224 782.7 787 53.7
Psat4g072920 Pisum sativum HOM05D006677 ORTHO05D008348 4.3e-224 781.9 776 53.4
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 2.4e-222 776.2 762 52.8
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 1.4e-219 766.9 797 50.9
CDE11G0086 Ceratophyllum demersum HOM05D006677 ORTHO05D008348 1.5e-211 740.3 780 49.1
Eucgr.D02100 Eucalyptus grandis HOM05D006677 ORTHO05D008348 1.6e-205 720.3 585 64.4
Sabra01G0125500 Salix brachista HOM05D006677 ORTHO05D008348 5.2e-201 705.3 642 59.7
BcaC06g31390 Brassica carinata HOM05D006677 ORTHO05D008348 3.7e-199 699.1 657 53.9
HPP92_022463 Vanilla planifolia HOM05D006677 ORTHO05D008348 8.3e-199 698.0 814 48.4
BcaC06g31392 Brassica carinata HOM05D006677 ORTHO05D008348 5.4e-198 695.3 768 48.8
ATR0057G118 Amborella trichopoda HOM05D006677 ORTHO05D008348 2.1e-170 603.6 802 43.1
Actinidia10841 Actinidia chinensis HOM05D006677 ORTHO05D008348 2.8e-170 603.2 791 48.2
Glyma.05G062000 Glycine max HOM05D006677 ORTHO05D008348 5.8e-160 568.9 593 52.3
Zm00001eb000330 Zea mays HOM05D006677 ORTHO05D008348 8.4e-143 511.9 776 39.8
unitig_21.g20314 Utricularia gibba HOM05D006677 ORTHO05D008348 4.2e-126 456.4 782 38.1
Pp3c19_23280 Physcomitrium patens HOM05D006677 ORTHO05D008348 1.1e-99 368.6 851 33.8
TPR.G37689 Trifolium pratense HOM05D006677 ORTHO05D008348 3.6e-93 347.1 297 57.6
GSVIVG01006275001 Vitis vinifera HOM05D006677 ORTHO05D000005 1.5e-91 341.7 251 68.5
DCAR_004979 Daucus carota HOM05D006677 ORTHO05D008348 7.5e-91 339.3 289 58.5
DCAR_004986 Daucus carota HOM05D006677 ORTHO05D008348 2.2e-90 337.8 287 57.8
GSVIVG01006276001 Vitis vinifera HOM05D006677 ORTHO05D008348 2.5e-86 324.3 247 63.6
TPR.G36090 Trifolium pratense HOM05D006677 ORTHO05D008348 1.6e-85 321.6 410 45.6
AagrBONN_evm.TU.Sc2ySwM_228.2440 Anthoceros agrestis HOM05D006677 ORTHO05D008348 2.0e-83 314.7 847 29.9
Cpa.g.sc3684.1 Carica papaya HOM05D006677 ORTHO05D008348 5.0e-79 300.1 252 58.3
TAR365G0661 Trochodendron aralioides HOM05D006677 ORTHO05D008348 3.7e-74 283.9 307 53.1
TAR633G2042 Trochodendron aralioides HOM05D006677 ORTHO05D008348 2.8e-61 241.1 194 65.5
DCAR_004983 Daucus carota HOM05D006677 ORTHO05D008348 4.4e-51 207.2 206 50.5
DCAR_004974 Daucus carota HOM05D006677 ORTHO05D008348 5.4e-49 200.3 211 49.3
CAN.G26.36 Capsicum annuum HOM05D006677 ORTHO05D008348 3.3e-46 191.0 168 57.1
TAR629G1120 Trochodendron aralioides HOM05D006677 ORTHO05D008348 1.4e-41 175.6 139 61.2
DCAR_004984 Daucus carota HOM05D006677 ORTHO05D008348 8.4e-34 149.8 87 81.6
Os10g0560500 Oryza sativa ssp. japonica HOM05D006677 ORTHO05D008348 4.2e-33 147.5 274 36.1
CBR_g16835 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-31 141.7 1013 20.9
DCAR_004972 Daucus carota HOM05D006677 ORTHO05D008348 8.7e-23 113.2 119 50.4
CAN.G1178.24 Capsicum annuum HOM05D006677 ORTHO05D008348 4.8e-13 80.9 68 52.9
Cre06.g278126 Chlamydomonas reinhardtii HOM05D006677 ORTHO05D008348 6.9e-12 77.0 243 29.2
ECA233G4789 Erigeron canadensis HOM05D006677 ORTHO05D008348 1.0e-10 73.2 50 72.0
ECA234G1619 Erigeron canadensis HOM05D000206 ORTHO05D000232 1.7e-10 72.4 49 71.4
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 4.2e-09 67.8 45 64.4


User provided reference genes

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