Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 8.6e-174 613.6 321 100.0
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 4.0e-171 604.7 321 98.8
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.7e-81 307.0 314 61.8
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 5.0e-81 305.4 300 59.0
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.2e-79 300.8 315 61.0
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 7.5e-69 265.0 254 57.9
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 1.5e-64 250.8 309 49.5
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 1.9e-64 250.4 314 48.1
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 2.8e-63 246.5 321 52.3
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 5.2e-62 242.3 315 50.5
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 6.8e-62 241.9 315 50.5
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 8.9e-62 241.5 301 51.8
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.3e-60 237.7 307 45.0
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 1.7e-60 237.3 323 50.5
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 2.2e-60 236.9 314 48.4
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 4.9e-60 235.7 317 45.7
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 8.3e-60 235.0 307 44.3
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 7.0e-59 231.9 316 44.9
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 7.8e-58 228.4 313 44.1
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 1.0e-57 228.0 323 44.6
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 5.0e-57 225.7 349 45.3
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 8.6e-57 224.9 310 45.5
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 1.1e-56 224.6 313 44.1
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 5.6e-56 222.2 316 50.6
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 2.1e-55 220.3 309 43.7
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 6.1e-55 218.8 343 45.8
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 8.0e-55 218.4 317 45.7
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.8e-54 217.2 316 44.6
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 2.3e-54 216.9 233 51.9
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 5.2e-54 215.7 319 46.4
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 6.8e-54 215.3 323 46.7
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 6.8e-54 215.3 297 50.5
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 8.9e-54 214.9 319 43.3
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.5e-53 214.2 306 49.0
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 3.4e-53 213.0 316 47.8
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 7.5e-53 211.8 327 47.7
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 9.8e-53 211.5 316 47.5
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 4.9e-52 209.1 336 44.6
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 4.9e-52 209.1 321 48.0
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 7.0e-51 205.3 322 45.7
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 1.2e-50 204.5 326 45.1
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 2.0e-50 203.8 311 43.1
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.3e-49 201.1 319 45.8
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 3.0e-49 199.9 319 40.1
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 3.9e-49 199.5 323 39.3
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 5.0e-49 199.1 312 42.3
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 1.1e-48 198.0 308 45.8
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.5e-48 197.6 312 46.2
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 4.3e-48 196.1 273 44.0
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 1.4e-46 191.0 297 39.7
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 1.8e-46 190.7 333 42.0
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 2.3e-46 190.3 320 40.3
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 6.8e-46 188.7 330 44.2
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 5.8e-45 185.7 295 46.8
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 3.2e-43 179.9 316 44.6
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 4.1e-43 179.5 312 40.1
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 9.2e-43 178.3 332 41.3
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 2.1e-42 177.2 309 39.2
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 1.7e-41 174.1 342 36.3
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 3.0e-41 173.3 304 43.8
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 6.6e-41 172.2 302 38.4
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 1.5e-40 171.0 300 42.3
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 2.5e-40 170.2 303 43.6
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 2.5e-40 170.2 315 40.3
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 7.3e-40 168.7 317 37.5
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.2e-39 167.9 288 41.3
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 2.1e-39 167.2 326 34.7
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.1e-39 167.2 288 39.6
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 2.8e-39 166.8 308 42.5
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 2.8e-39 166.8 307 43.3
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 3.6e-39 166.4 310 38.4
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 1.8e-38 164.1 207 48.3
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.8e-38 164.1 323 34.7
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 5.2e-38 162.5 321 35.8
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 6.8e-38 162.2 321 41.1
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.5e-37 161.0 325 34.5
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.7e-36 157.5 326 39.6
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 4.9e-36 156.0 314 38.9
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 1.1e-35 154.8 313 41.2
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 1.1e-35 154.8 305 39.0
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 2.4e-35 153.7 305 38.7
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 9.2e-35 151.8 309 40.8
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 9.2e-35 151.8 309 40.8
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 9.2e-35 151.8 324 39.8
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 2.7e-34 150.2 297 35.7
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 2.7e-34 150.2 306 35.6
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 3.5e-34 149.8 309 38.8
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 4.6e-34 149.4 309 39.8
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 4.6e-34 149.4 309 39.8
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 4.6e-34 149.4 323 38.1
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 6.0e-34 149.1 310 40.3
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 7.8e-34 148.7 316 41.5
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 1.7e-33 147.5 332 38.9
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 1.7e-33 147.5 333 38.1
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.0e-33 146.7 297 35.4
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 6.6e-33 145.6 304 35.2
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 1.1e-32 144.8 316 37.3
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 2.5e-32 143.7 269 39.0
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 2.5e-32 143.7 279 38.4
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 3.3e-32 143.3 316 37.3
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 5.6e-32 142.5 335 37.9
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 9.6e-32 141.7 302 36.4
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 1.2e-31 141.4 338 38.8
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 3.6e-31 139.8 335 37.6
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 3.6e-31 139.8 304 38.2
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 3.6e-31 139.8 314 32.5
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 4.7e-31 139.4 278 42.4
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.4e-30 137.9 318 37.7
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 1.5e-29 134.4 310 35.8
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 3.4e-29 133.3 316 39.2
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 7.6e-29 132.1 266 41.4
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 1.3e-28 131.3 304 31.9
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.7e-28 131.0 291 41.2
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 2.2e-28 130.6 322 36.3
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 2.9e-28 130.2 334 35.9
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 4.9e-28 129.4 300 37.3
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.2e-26 124.8 295 36.3
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 6.0e-26 122.5 301 34.6
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 3.9e-25 119.8 295 34.9
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 5.1e-25 119.4 306 37.3
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 6.6e-25 119.0 297 36.7
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 5.6e-24 115.9 295 37.3
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 5.6e-24 115.9 284 39.8
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 9.6e-24 115.2 295 32.9
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 3.6e-23 113.2 315 33.7
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 8.1e-23 112.1 316 30.7
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 1.1e-22 111.7 292 37.7
PSO017G6556 Papaver somniferum HOM05D004679 ORTHO05D005524 1.1e-22 111.7 252 41.3
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 1.1e-22 111.7 160 41.2
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.8e-22 110.9 296 37.8
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 4.0e-22 109.8 315 30.8
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 1.5e-21 107.8 298 33.2
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 1.3e-20 104.8 296 33.1
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 1.3e-20 104.8 189 37.0
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 1.7e-20 104.4 199 41.2
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 2.2e-20 104.0 288 36.5
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 2.2e-20 104.0 288 36.5
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 2.9e-20 103.6 288 36.5
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 2.9e-20 103.6 320 29.4
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 3.2e-19 100.1 292 33.9
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 2.7e-18 97.1 294 30.6
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 6.0e-18 95.9 187 35.8
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.3e-17 94.7 287 34.5
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 2.5e-16 90.5 312 31.1
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 9.6e-16 88.6 275 38.5
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 6.9e-14 82.4 238 35.7
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 5.8e-13 79.3 265 36.6
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 7.6e-13 79.0 183 35.5
ECA234G4300 Erigeron canadensis HOM05D004679 ORTHO05D005524 9.9e-13 78.6 130 37.7
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 4.9e-12 76.3 205 34.1
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 4.2e-11 73.2 171 36.3
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 7.1e-11 72.4 288 31.6
Lj5g0021418 Lotus japonicus HOM05D004679 ORTHO05D005524 1.2e-10 71.6 162 34.0
Lalb_Chr06g0166021 Lupinus albus HOM05D004679 ORTHO05D005524 2.7e-10 70.5 293 31.7
unitig_26.g10255 Utricularia gibba HOM05D004679 ORTHO05D005524 2.8e-07 60.5 155 28.4


User provided reference genes

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