Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006592 Camellia sinensis var. sinensis HOM05D000121 ORTHO05D018186 6.8e-136 487.3 236 100.0
Actinidia00678 Actinidia chinensis HOM05D000121 ORTHO05D007423 1.3e-41 174.1 185 51.4
vmacro19059 Vaccinium macrocarpon HOM05D000121 ORTHO05D007423 5.2e-35 152.1 211 46.0
Dinv21413 Davidia involucrata HOM05D000121 ORTHO05D007423 9.8e-34 147.9 168 50.6
TAR625G0397 Trochodendron aralioides HOM05D000121 ORTHO05D007423 1.3e-25 120.9 186 38.2
Potri.003G182601 Populus trichocarpa HOM05D000121 ORTHO05D007423 8.3e-25 118.2 184 39.1
CiPaw.01G254800 Carya illinoinensis HOM05D000121 ORTHO05D007423 2.4e-24 116.7 184 41.8
Cfa001878 Carpinus fangiana HOM05D000121 ORTHO05D007423 9.2e-24 114.8 184 40.2
Sabra03G0133400 Salix brachista HOM05D000121 ORTHO05D007423 1.2e-23 114.4 106 52.8
Atru.chr10.2415_Atru.chr10.2416 Acer truncatum HOM05D000121 ORTHO05D007423 2.0e-23 113.6 184 39.7
Nn8g39907 Nelumbo nucifera HOM05D000121 ORTHO05D007423 2.0e-23 113.6 185 37.8
Rhsim08G0205400 Rhododendron simsii HOM05D000121 ORTHO05D007423 2.7e-23 113.2 166 45.2
Prupe.3G098500 Prunus persica HOM05D000121 ORTHO05D007423 7.8e-23 111.7 184 38.6
Manes.11G066800 Manihot esculenta HOM05D000121 ORTHO05D007423 1.0e-22 111.3 184 38.6
FvH4_6g28590 Fragaria vesca HOM05D000121 ORTHO05D007423 3.9e-22 109.4 184 38.0
RcHm_v2.0_Chr2g0132931 Rosa chinensis HOM05D000121 ORTHO05D007423 1.9e-21 107.1 180 40.0
VMungo0647G2187 Vigna mungo HOM05D003335 ORTHO05D003853 1.6e-20 104.0 137 40.9
VMungo1080G0885 Vigna mungo HOM05D000121 ORTHO05D007423 1.6e-20 104.0 140 41.4
CANSAT56G2614 Cannabis sativa HOM05D000121 ORTHO05D007423 8.1e-20 101.7 184 35.3
Cc04_g05140 Coffea canephora HOM05D000121 ORTHO05D007423 1.4e-19 100.9 195 34.9
FAN14G1613 Fragaria x ananassa HOM05D000121 ORTHO05D007423 1.4e-19 100.9 182 37.4
Sc12g0008290 Simmondsia chinensis HOM05D000121 ORTHO05D007423 7.5e-18 95.1 183 32.8
Nitab4.5_0010868g0020 Nicotiana tabacum HOM05D000121 ORTHO05D007423 4.9e-17 92.4 222 32.0
Duzib235G1084 Durio zibethinus HOM05D000121 ORTHO05D007423 8.3e-17 91.7 184 34.2
ECA247G2933 Erigeron canadensis HOM05D000121 ORTHO05D007423 1.1e-16 91.3 170 32.9
Peaxi162Scf00553g00540 Petunia axillaris HOM05D000121 ORTHO05D007423 1.1e-16 91.3 198 33.8
PGR102G2529 Punica granatum HOM05D000121 ORTHO05D007423 1.2e-15 87.8 169 34.3
Thecc.06G042000 Theobroma cacao HOM05D000121 ORTHO05D007423 2.7e-15 86.7 184 33.2
Gohir.D05G119900 Gossypium hirsutum HOM05D000121 ORTHO05D007423 3.5e-15 86.3 184 33.7
Gorai.009G123500 Gossypium raimondii HOM05D000121 ORTHO05D007423 6.0e-15 85.5 184 33.7
MD09G1225000 Malus domestica HOM05D000121 ORTHO05D007423 1.0e-14 84.7 167 37.1
FAN05G1320 Fragaria x ananassa HOM05D000121 ORTHO05D007423 2.3e-14 83.6 152 36.2
PSO384G0944 Papaver somniferum HOM05D000121 ORTHO05D007423 3.0e-14 83.2 185 31.4
Phvul.005G175600 Phaseolus vulgaris HOM05D000121 ORTHO05D007423 6.6e-14 82.0 187 31.0
Solyc03g117540.4 Solanum lycopersicum HOM05D000121 ORTHO05D007423 1.1e-13 81.3 199 30.7
Lj9C493G4 Lonicera japonica HOM05D000121 ORTHO05D007423 4.3e-13 79.3 143 37.8
Medtr2g105190 Medicago truncatula HOM05D000121 ORTHO05D007423 4.3e-13 79.3 181 31.5
Sopen03g036440 Solanum pennellii HOM05D000121 ORTHO05D018186 7.3e-13 78.6 105 42.9
Actinidia15588 Actinidia chinensis HOM05D000121 ORTHO05D018186 1.6e-12 77.4 50 74.0
CAN.G407.8 Capsicum annuum HOM05D000121 ORTHO05D007423 1.6e-12 77.4 171 35.1
Lj3g0008200 Lotus japonicus HOM05D000121 ORTHO05D007423 4.7e-12 75.9 187 31.6
Psat5g098320 Pisum sativum HOM05D000121 ORTHO05D007423 8.1e-12 75.1 191 31.4
arahy.Tifrunner.gnm1.ann1.5LV02X Arachis hypogaea HOM05D000121 ORTHO05D007423 1.4e-11 74.3 157 29.9
TWI18G1091 Tripterygium wilfordii HOM05D000121 ORTHO05D007423 1.4e-11 74.3 189 31.7
Sed0004285 Sechium edule HOM05D000121 ORTHO05D007423 1.8e-11 73.9 184 28.3
Glyma.13G370300 Glycine max HOM05D000121 ORTHO05D007423 5.2e-11 72.4 187 30.5
HanXRQChr04g0099601 Helianthus annuus HOM05D000121 ORTHO05D007423 6.8e-11 72.0 145 31.0
Aqoxy7G02252 Aquilegia oxysepala HOM05D000121 ORTHO05D007423 2.0e-10 70.5 187 26.2
ClCG10G012900 Citrullus lanatus HOM05D000121 ORTHO05D007423 5.8e-10 68.9 190 25.8
MSTRG.11184 Avicennia marina HOM05D000121 ORTHO05D007423 1.3e-09 67.8 154 30.5
MBI15_g18248_MAGBIO Magnolia biondii HOM05D000121 ORTHO05D018186 1.7e-09 67.4 87 39.1
MELO3C026737.2 Cucumis melo HOM05D000121 ORTHO05D007423 3.2e-08 63.2 94 30.9
A03p51040 Brassica napus HOM05D000121 ORTHO05D007423 4.1e-08 62.8 167 31.1
AL3G44200 Arabidopsis lyrata HOM05D000121 ORTHO05D007423 9.2e-08 61.6 169 29.6
Migut.I00690 Erythranthe guttata HOM05D000121 ORTHO05D018186 1.2e-07 61.2 157 26.8
CsaV3_3G032770 Cucumis sativus L. HOM05D000121 ORTHO05D007423 1.6e-07 60.8 94 30.9
C07p49470 Brassica napus HOM05D000121 ORTHO05D007423 2.7e-07 60.1 166 30.1
Thhalv10024220m.g Eutrema salsugineum HOM05D000121 ORTHO05D007423 2.7e-07 60.1 166 30.1
TPR.G19154 Trifolium pratense HOM05D000121 ORTHO05D007423 2.7e-07 60.1 172 29.7
Sp7g16030 Schrenkiella parvula HOM05D000121 ORTHO05D007423 3.5e-07 59.7 168 28.0
BraA03t14190Z Brassica rapa HOM05D000121 ORTHO05D007423 6.0e-07 58.9 171 29.2
BolC7t45452H Brassica oleracea HOM05D000121 ORTHO05D007423 7.8e-07 58.5 174 30.5
AT2G07680 Arabidopsis thaliana HOM05D000121 ORTHO05D007423 1.7e-06 57.4 161 29.8
Lsat_1_v5_gn_1_31080 Lactuca sativa HOM05D000121 ORTHO05D007423 5.1e-06 55.8 138 32.6


User provided reference genes

Program Settings