Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 1.2e-95 353.2 179 100.0
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 2.8e-81 305.4 179 85.5
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.4e-77 293.1 179 82.7
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 3.2e-77 292.0 179 84.4
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 8.1e-73 277.3 180 80.0
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.8e-72 276.2 179 78.2
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 1.3e-70 270.0 179 77.7
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 1.7e-70 269.6 178 75.8
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 3.8e-70 268.5 179 76.0
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 4.9e-70 268.1 179 75.4
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 6.4e-70 267.7 177 76.8
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 1.1e-69 266.9 179 77.7
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 3.2e-69 265.4 179 75.4
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 5.4e-69 264.6 179 74.3
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 7.1e-69 264.2 179 73.7
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 7.1e-69 264.2 179 76.0
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 9.3e-69 263.8 178 74.7
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 1.6e-68 263.1 179 74.9
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 2.7e-68 262.3 178 74.7
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 2.7e-68 262.3 177 76.8
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 3.5e-68 261.9 180 75.6
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 6.0e-68 261.2 179 74.9
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 6.0e-68 261.2 179 73.7
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 7.9e-68 260.8 179 73.2
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 1.0e-67 260.4 178 74.2
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 1.0e-67 260.4 179 74.9
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 1.3e-67 260.0 179 73.7
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.3e-67 260.0 221 65.2
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 1.8e-67 259.6 178 73.6
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 1.8e-67 259.6 179 73.7
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 2.3e-67 259.2 179 74.3
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 2.3e-67 259.2 179 73.7
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 5.1e-67 258.1 173 75.1
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 5.1e-67 258.1 179 75.4
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 8.7e-67 257.3 179 73.7
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 8.7e-67 257.3 179 72.6
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 8.7e-67 257.3 179 73.7
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 8.7e-67 257.3 169 77.5
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 8.7e-67 257.3 177 74.0
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 1.1e-66 256.9 179 72.6
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.5e-66 256.5 178 73.0
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.5e-66 256.5 179 73.7
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 1.5e-66 256.5 179 72.6
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.5e-66 256.5 169 76.3
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 1.5e-66 256.5 179 73.7
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 1.5e-66 256.5 179 73.2
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 1.9e-66 256.1 169 75.7
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 2.5e-66 255.8 179 74.3
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 2.5e-66 255.8 179 74.3
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 3.3e-66 255.4 180 73.3
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 4.3e-66 255.0 179 73.2
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 5.6e-66 254.6 179 72.6
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 7.4e-66 254.2 179 72.1
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 7.4e-66 254.2 179 72.1
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 9.6e-66 253.8 179 72.1
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 9.6e-66 253.8 179 72.1
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 1.3e-65 253.4 179 74.3
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 1.3e-65 253.4 178 74.7
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 1.3e-65 253.4 179 74.3
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 1.6e-65 253.1 179 71.5
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 1.6e-65 253.1 179 73.7
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 1.6e-65 253.1 178 72.5
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 1.6e-65 253.1 179 71.5
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 2.1e-65 252.7 179 72.6
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 2.1e-65 252.7 179 71.5
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 2.8e-65 252.3 175 74.3
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 2.8e-65 252.3 193 69.4
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.7e-65 251.9 179 72.1
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 4.8e-65 251.5 179 74.9
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 6.2e-65 251.1 179 71.5
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 6.2e-65 251.1 179 71.5
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 6.2e-65 251.1 179 71.5
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 6.2e-65 251.1 179 72.1
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 8.1e-65 250.8 180 72.8
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 1.4e-64 250.0 179 70.9
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 1.8e-64 249.6 179 71.5
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.8e-64 249.6 179 70.9
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 1.8e-64 249.6 171 76.0
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 4.0e-64 248.4 176 72.7
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 5.3e-64 248.1 179 71.5
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 5.3e-64 248.1 178 71.3
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 6.9e-64 247.7 171 73.1
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 6.9e-64 247.7 179 70.4
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 6.9e-64 247.7 167 74.3
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 9.0e-64 247.3 178 73.6
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 2.6e-63 245.7 157 80.9
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 3.4e-63 245.4 174 73.0
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 3.4e-63 245.4 179 69.3
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 2.2e-62 242.7 179 71.5
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 2.9e-62 242.3 179 71.5
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 3.8e-62 241.9 175 71.4
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 6.5e-62 241.1 175 70.9
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 8.4e-62 240.7 169 71.6
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 1.4e-61 240.0 171 73.7
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 1.4e-61 240.0 173 70.5
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 3.2e-61 238.8 168 73.8
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 3.2e-61 238.8 168 73.2
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 5.5e-61 238.0 182 66.5
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 6.0e-60 234.6 179 67.6
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 6.0e-60 234.6 160 73.8
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 1.0e-59 233.8 207 63.8
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 1.0e-59 233.8 165 72.7
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.8e-59 233.0 175 68.6
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 3.0e-59 232.3 174 69.0
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 8.7e-59 230.7 179 68.2
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 1.1e-58 230.3 179 68.2
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.9e-58 229.6 208 62.5
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 7.4e-58 227.6 175 70.3
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 1.3e-57 226.9 178 65.7
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 8.2e-57 224.2 169 68.6
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 8.2e-57 224.2 169 68.6
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 1.1e-56 223.8 169 68.6
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 1.8e-56 223.0 169 68.0
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 5.3e-56 221.5 167 68.9
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 6.9e-56 221.1 169 68.0
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 9.0e-56 220.7 176 68.2
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 1.2e-55 220.3 169 67.5
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 1.5e-55 219.9 169 68.0
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 2.0e-55 219.5 179 65.4
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 7.6e-55 217.6 176 63.6
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 1.7e-54 216.5 150 74.7
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 3.8e-54 215.3 146 74.7
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 5.0e-54 214.9 150 74.0
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 8.4e-54 214.2 176 63.1
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 3.2e-53 212.2 175 63.4
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 4.6e-52 208.4 178 61.8
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 6.3e-49 198.0 174 62.1
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 8.2e-49 197.6 170 64.7
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 1.4e-43 180.3 120 79.2
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.8e-43 179.9 113 81.4
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 3.3e-42 175.6 162 53.7
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 9.7e-42 174.1 168 51.2
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 2.2e-41 172.9 171 52.0
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 3.7e-41 172.2 163 52.8
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 2.0e-39 166.4 118 73.7
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 7.7e-39 164.5 165 50.9
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 1.3e-38 163.7 169 56.2
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 1.3e-38 163.7 112 77.7
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 3.6e-36 155.6 104 74.0
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.8e-35 153.3 158 56.3
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 2.6e-34 149.4 160 51.9
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 7.4e-34 147.9 173 51.4
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.1e-32 144.1 188 51.6
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 1.8e-32 143.3 221 41.2
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 2.2e-30 136.3 163 46.6
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 3.2e-29 132.5 82 78.0
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.6e-28 130.2 93 67.7
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 4.7e-28 128.6 86 76.7
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 6.1e-28 128.3 89 70.8
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 1.5e-26 123.6 86 69.8
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 4.4e-26 122.1 83 74.7
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 8.2e-25 117.9 118 57.6
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 2.4e-24 116.3 85 67.1
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 5.3e-24 115.2 83 69.9
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 1.7e-22 110.2 142 45.8
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 2.9e-22 109.4 75 74.7
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 8.5e-22 107.8 97 58.8
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 2.1e-20 103.2 144 45.1
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 5.9e-15 85.1 57 70.2
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 4.0e-11 72.4 59 57.6
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 6.8e-11 71.6 146 35.6
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 1.2e-10 70.9 217 30.0
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 3.4e-10 69.3 85 47.1
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 2.2e-09 66.6 44 68.2
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 1.1e-08 64.3 42 66.7


User provided reference genes

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