Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006577 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 3.0e-159 565.1 279 100.0
CSS0041581 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 3.7e-157 558.1 279 98.9
Actinidia06769 Actinidia chinensis HOM05D002510 ORTHO05D006928 6.0e-115 417.9 285 73.3
Dinv31320 Davidia involucrata HOM05D002510 ORTHO05D006928 7.8e-115 417.5 283 75.6
Actinidia38854 Actinidia chinensis HOM05D002510 ORTHO05D006928 2.6e-110 402.5 286 71.3
Potri.008G039300 Populus trichocarpa HOM05D002510 ORTHO05D006928 1.8e-106 389.8 293 68.9
GSVIVG01016268001 Vitis vinifera HOM05D002510 ORTHO05D006928 1.1e-105 387.1 273 70.3
Duzib114G0372 Durio zibethinus HOM05D002510 ORTHO05D006928 1.5e-105 386.7 281 69.0
Manes.07G100200 Manihot esculenta HOM05D002510 ORTHO05D006928 3.3e-105 385.6 295 67.1
Potri.010G222900 Populus trichocarpa HOM05D002510 ORTHO05D006928 9.6e-105 384.0 281 68.7
Thecc.10G074800 Theobroma cacao HOM05D002510 ORTHO05D006928 1.3e-104 383.6 285 69.1
Duzib128G0305 Durio zibethinus HOM05D002510 ORTHO05D006928 1.4e-103 380.2 280 68.6
Gorai.011G239300 Gossypium raimondii HOM05D002510 ORTHO05D006928 1.4e-103 380.2 285 68.1
Lj5g0027397 Lotus japonicus HOM05D002510 ORTHO05D006928 2.4e-103 379.4 277 66.8
Gohir.A10G205600 Gossypium hirsutum HOM05D002510 ORTHO05D006928 4.0e-103 378.6 229 77.3
Sabra08G0027000 Salix brachista HOM05D002510 ORTHO05D006928 9.0e-103 377.5 228 77.2
CSS0017911 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 2.0e-102 376.3 228 79.8
CiPaw.01G272400 Carya illinoinensis HOM05D002510 ORTHO05D006928 4.5e-102 375.2 284 66.9
MD01G1108300 Malus domestica HOM05D002510 ORTHO05D006928 4.5e-102 375.2 290 65.9
Prupe.2G213200 Prunus persica HOM05D002510 ORTHO05D006928 4.5e-102 375.2 298 64.8
QL08p055746 Quercus lobata HOM05D002510 ORTHO05D006928 4.5e-102 375.2 288 64.9
Eucgr.G02836 Eucalyptus grandis HOM05D002510 ORTHO05D006928 5.8e-102 374.8 273 69.2
Glyma.20G179800 Glycine max HOM05D002510 ORTHO05D006928 5.8e-102 374.8 283 67.5
arahy.Tifrunner.gnm1.ann1.D0MVTX Arachis hypogaea HOM05D002510 ORTHO05D006928 9.9e-102 374.0 289 64.7
Glyma.10G210800 Glycine max HOM05D002510 ORTHO05D006928 1.3e-101 373.6 283 66.1
Ciclev10032329m.g Citrus clementina HOM05D002510 ORTHO05D006928 2.9e-101 372.5 292 66.8
arahy.Tifrunner.gnm1.ann1.B5KM0B Arachis hypogaea HOM05D002510 ORTHO05D006928 3.8e-101 372.1 289 64.7
Haze_16887 Corylus avellana HOM05D002510 ORTHO05D006928 3.8e-101 372.1 290 66.9
TAR369G0428 Trochodendron aralioides HOM05D002510 ORTHO05D006928 3.8e-101 372.1 282 66.0
TWI15G0405 Tripterygium wilfordii HOM05D002510 ORTHO05D006928 8.4e-101 370.9 275 66.5
RcHm_v2.0_Chr1g0363321 Rosa chinensis HOM05D002510 ORTHO05D006928 5.5e-100 368.2 282 64.2
Psat6g183480 Pisum sativum HOM05D002510 ORTHO05D006928 7.1e-100 367.9 277 67.5
Medtr1g095000 Medicago truncatula HOM05D002510 ORTHO05D006928 9.3e-100 367.5 278 66.2
Atru.chr12.758 Acer truncatum HOM05D002510 ORTHO05D006928 1.6e-99 366.7 279 66.7
Gohir.D10G213800 Gossypium hirsutum HOM05D002510 ORTHO05D006928 2.1e-99 366.3 229 76.0
Lj1C913T4 Lonicera japonica HOM05D002510 ORTHO05D006928 2.1e-99 366.3 280 67.1
FAN01G2940 Fragaria x ananassa HOM05D002510 ORTHO05D007210 3.5e-99 365.5 283 65.0
Oeu031347.1 Olea europaea HOM05D002510 ORTHO05D006928 3.5e-99 365.5 269 68.4
TAR623G0044 Trochodendron aralioides HOM05D002510 ORTHO05D006928 1.8e-98 363.2 290 64.1
FvH4_7g19440 Fragaria vesca HOM05D002510 ORTHO05D006928 2.3e-98 362.8 284 62.7
FAN06G0282 Fragaria x ananassa HOM05D002510 ORTHO05D006928 3.0e-98 362.5 284 62.3
Lalb_Chr02g0142201 Lupinus albus HOM05D002510 ORTHO05D006928 3.0e-98 362.5 277 65.3
MD07G1174400 Malus domestica HOM05D002510 ORTHO05D006928 3.0e-98 362.5 294 63.3
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 3.9e-98 362.1 223 76.2
Nn2g10810 Nelumbo nucifera HOM05D002510 ORTHO05D006928 3.9e-98 362.1 224 76.3
FAN03G1741 Fragaria x ananassa HOM05D002510 ORTHO05D006928 6.7e-98 361.3 284 63.0
Phvul.007G094800 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 6.7e-98 361.3 278 64.7
DCAR_019102 Daucus carota HOM05D002510 ORTHO05D006928 8.7e-98 360.9 273 65.9
Sc20g0001820 Simmondsia chinensis HOM05D002510 ORTHO05D006928 1.1e-97 360.5 290 64.5
EL10Ac3g05855 Beta vulgaris HOM05D002510 ORTHO05D006928 1.9e-97 359.8 278 63.3
PGR142G1169 Punica granatum HOM05D002510 ORTHO05D006928 4.3e-97 358.6 277 65.0
MSTRG.9172 Avicennia marina HOM05D002510 ORTHO05D006928 9.6e-97 357.5 277 63.9
FAN10G3768 Fragaria x ananassa HOM05D002510 ORTHO05D007210 9.6e-97 357.5 279 63.1
vmacro04869 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 1.3e-96 357.1 282 64.5
Cc02_g11320 Coffea canephora HOM05D002510 ORTHO05D006928 3.7e-96 355.5 279 65.2
Hund12054 Selenicereus undatus HOM05D002510 ORTHO05D006928 6.2e-96 354.8 224 75.0
FAN10G0968 Fragaria x ananassa HOM05D002510 ORTHO05D007210 1.1e-95 354.0 283 63.3
Ah.10g032650 Amaranthus hybridus HOM05D002510 ORTHO05D006928 3.1e-95 352.4 227 72.7
Lalb_Chr06g0162351 Lupinus albus HOM05D002510 ORTHO05D006928 9.0e-95 350.9 241 69.3
ClCG08G007520 Citrullus lanatus HOM05D002510 ORTHO05D006928 1.2e-94 350.5 225 72.0
Sabra10G0172300 Salix brachista HOM05D002510 ORTHO05D006928 1.2e-94 350.5 230 71.7
CsaV3_6G036450 Cucumis sativus L. HOM05D002510 ORTHO05D006928 2.6e-94 349.4 291 59.5
MELO3C019798.2 Cucumis melo HOM05D002510 ORTHO05D006928 3.4e-94 349.0 293 59.4
Migut.F01984 Erythranthe guttata HOM05D002510 ORTHO05D006928 3.4e-94 349.0 277 62.8
THA.LOC104827063 Tarenaya hassleriana HOM05D002510 ORTHO05D006928 4.5e-94 348.6 254 66.5
AUR62018249 Chenopodium quinoa HOM05D002510 ORTHO05D006928 7.6e-94 347.8 291 61.2
Lsat_1_v5_gn_2_112320 Lactuca sativa HOM05D002510 ORTHO05D006928 7.6e-94 347.8 266 66.2
HanXRQChr14g0456861 Helianthus annuus HOM05D002510 ORTHO05D006928 1.3e-93 347.1 280 62.9
Aqoxy1G01228 Aquilegia oxysepala HOM05D002510 ORTHO05D006928 1.7e-93 346.7 238 71.0
Thhalv10017009m.g Eutrema salsugineum HOM05D002510 ORTHO05D006928 1.1e-92 344.0 291 60.1
PSO063G7611 Papaver somniferum HOM05D002510 ORTHO05D006928 2.5e-92 342.8 273 62.3
Carub.0004s2104 Capsella rubella HOM05D002510 ORTHO05D006928 3.2e-92 342.4 297 59.6
Sp4g21360 Schrenkiella parvula HOM05D002510 ORTHO05D006928 3.2e-92 342.4 237 68.4
Sed0007153 Sechium edule HOM05D002510 ORTHO05D006928 5.5e-92 341.7 276 61.2
AUR62037755 Chenopodium quinoa HOM05D002510 ORTHO05D006928 9.3e-92 340.9 250 66.4
Glyma.02G074000 Glycine max HOM05D002510 ORTHO05D006928 1.6e-91 340.1 246 69.1
Nitab4.5_0002524g0010 Nicotiana tabacum HOM05D002510 ORTHO05D006928 1.6e-91 340.1 254 64.6
PSO339G5277 Papaver somniferum HOM05D002510 ORTHO05D006928 1.6e-91 340.1 273 62.3
Nitab4.5_0001053g0060 Nicotiana tabacum HOM05D002510 ORTHO05D006928 2.7e-91 339.3 279 61.3
PGSC0003DMG400033889 Solanum tuberosum HOM05D002510 ORTHO05D006928 2.7e-91 339.3 243 67.9
AT2G39000 Arabidopsis thaliana HOM05D002510 ORTHO05D006928 3.5e-91 339.0 287 59.6
CARHR133780 Cardamine hirsuta HOM05D002510 ORTHO05D006928 4.6e-91 338.6 249 66.3
AL4G36300 Arabidopsis lyrata HOM05D002510 ORTHO05D006928 6.0e-91 338.2 280 60.4
CAN.G131.8 Capsicum annuum HOM05D002510 ORTHO05D006928 1.0e-90 337.4 260 65.8
Rhsim03G0120400 Rhododendron simsii HOM05D002510 ORTHO05D006928 6.7e-90 334.7 227 72.7
BcaC02g12914 Brassica carinata HOM05D002510 ORTHO05D006928 2.5e-89 332.8 288 59.4
C04p67010 Brassica napus HOM05D002510 ORTHO05D006928 4.8e-88 328.6 288 59.0
BolC4t28203H Brassica oleracea HOM05D002510 ORTHO05D006928 4.8e-88 328.6 289 58.8
BraA04t18437Z Brassica rapa HOM05D002510 ORTHO05D006928 2.4e-87 326.2 289 58.8
Lj3g0006441 Lotus japonicus HOM05D002510 ORTHO05D006928 5.3e-87 325.1 228 68.4
Phvul.004G083200 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 2.6e-86 322.8 275 62.2
VMungo1197G0001 Vigna mungo HOM05D002510 ORTHO05D006928 7.6e-86 321.2 272 61.0
A04p29730 Brassica napus HOM05D002510 ORTHO05D006928 9.3e-84 314.3 312 54.8
HPP92_014717 Vanilla planifolia HOM05D002510 ORTHO05D006928 1.2e-83 313.9 227 65.2
Lalb_Chr03g0035921 Lupinus albus HOM05D002510 ORTHO05D006928 2.7e-83 312.8 264 60.2
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 1.1e-81 307.4 248 64.1
CDE04G1444 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 2.2e-80 303.1 277 58.1
ATR0048G011 Amborella trichopoda HOM05D002510 ORTHO05D006928 2.8e-80 302.8 232 60.8
Migut.F01753 Erythranthe guttata HOM05D002510 ORTHO05D006928 1.4e-79 300.4 269 58.0
SGA_v2.0_scaffold62G21410 Striga asiatica HOM05D002510 ORTHO05D006928 1.4e-79 300.4 208 68.3
ECA238G3090 Erigeron canadensis HOM05D002510 ORTHO05D006928 2.6e-78 296.2 239 61.5
Lj3g0019343 Lotus japonicus HOM05D002510 ORTHO05D006928 2.5e-76 289.7 247 59.9
Cpa.g.sc53.85 Carica papaya HOM05D002510 ORTHO05D006928 4.2e-76 288.9 181 75.7
Gohir.D10G213900 Gossypium hirsutum HOM05D002510 ORTHO05D006928 7.2e-76 288.1 171 77.8
VMungo0464G1224 Vigna mungo HOM05D002510 ORTHO05D006928 7.2e-76 288.1 286 56.3
arahy.Tifrunner.gnm1.ann1.DB5KD4 Arachis hypogaea HOM05D002510 ORTHO05D006928 2.1e-75 286.6 276 54.3
arahy.Tifrunner.gnm1.ann1.L5PTYD Arachis hypogaea HOM05D002510 ORTHO05D006928 7.9e-75 284.6 276 54.0
Dinv36437 Davidia involucrata HOM05D002510 ORTHO05D006928 5.1e-74 282.0 232 65.5
unitig_88.g27817 Utricularia gibba HOM05D002510 ORTHO05D006928 6.7e-74 281.6 226 63.3
Os02g0806000 Oryza sativa ssp. japonica HOM05D002510 ORTHO05D006928 2.6e-73 279.6 227 57.3
SalBow4G2249 Salvia bowleyana HOM05D002510 ORTHO05D006928 2.8e-72 276.2 244 56.6
Atru.chr12.782 Acer truncatum HOM05D002510 ORTHO05D006928 8.2e-72 274.6 178 73.6
Peaxi162Scf01719g00013 Petunia axillaris HOM05D002510 ORTHO05D006928 9.1e-71 271.2 275 52.0
vmacro07070 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 3.6e-67 259.2 191 70.2
SalBow3G0053 Salvia bowleyana HOM05D002510 ORTHO05D006928 3.0e-66 256.1 165 71.5
SEGI_15474 Sequoiadendron giganteum HOM05D002510 ORTHO05D006928 5.7e-65 251.9 217 55.8
Gohir.A10G205500 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.7e-64 250.4 166 74.1
Oeu014386.1 Olea europaea HOM05D002510 ORTHO05D006928 8.2e-64 248.1 166 70.5
CDE06G2540 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 1.1e-52 211.1 200 57.0
Aa31LG5G20680 Aethionema arabicum HOM05D002510 ORTHO05D006928 3.5e-46 189.5 188 52.7
CAN.G790.5 Capsicum annuum HOM05D002510 ORTHO05D006928 7.7e-46 188.3 147 61.2
Mapoly0033s0159 Marchantia polymorpha HOM05D002510 ORTHO05D006928 2.5e-44 183.3 210 44.8
Sopen04g011630 Solanum pennellii HOM05D002510 ORTHO05D006928 2.2e-40 170.2 141 58.9
Solyc04g025240.2 Solanum lycopersicum HOM05D002510 ORTHO05D006928 4.9e-40 169.1 147 55.8
SMO134G0014 Selaginella moellendorffii HOM05D002510 ORTHO05D006928 8.3e-40 168.3 204 43.1
Glyma.16G155400 Glycine max HOM05D002510 ORTHO05D006928 3.1e-39 166.4 173 55.5
Zm00001eb172140 Zea mays HOM05D002510 ORTHO05D006928 7.3e-36 155.2 136 55.1
Lj2g0015916 Lotus japonicus HOM05D002510 ORTHO05D006928 9.5e-36 154.8 193 50.8
Solyc04g025230.1 Solanum lycopersicum HOM05D002510 ORTHO05D006928 1.8e-31 140.6 90 71.1
Haze_18780 Corylus avellana HOM05D000278 ORTHO05D005754 7.5e-25 118.6 173 43.4
Ciclev10024578m.g Citrus clementina HOM05D002510 ORTHO05D006928 1.9e-20 104.0 91 54.9
Nn3g20716 Nelumbo nucifera HOM05D002510 ORTHO05D006928 7.3e-20 102.1 131 45.0
Actinidia32448 Actinidia chinensis HOM05D002510 ORTHO05D006928 4.0e-18 96.3 80 58.8
AagrBONN_evm.TU.Sc2ySwM_117.96 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.9e-18 95.1 127 44.9
Cre16.g662650 Chlamydomonas reinhardtii HOM05D002510 ORTHO05D006928 2.5e-12 77.0 119 35.3
A03p21800 Brassica napus HOM05D002510 ORTHO05D006928 3.1e-10 70.1 44 63.6
PRCOL_00005349 Prasinoderma coloniale HOM05D002510 ORTHO05D006928 6.8e-10 68.9 75 48.0
MCO13G231 Micromonas commoda HOM05D005733 ORTHO05D006928 3.4e-09 66.6 87 36.8
Actinidia37356 Actinidia chinensis HOM05D002510 ORTHO05D006928 2.4e-07 60.5 48 60.4


User provided reference genes

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