Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 2876.7 1453 100.0
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 2803.1 1453 97.3
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 2236.1 1514 75.6
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 2169.0 1584 71.7
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 2164.0 1457 76.3
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 1934.8 1453 67.2
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 1907.5 1445 66.8
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 1859.0 1459 65.2
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 1834.3 1452 65.2
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 1811.6 1453 64.0
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 1805.0 1545 61.4
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1788.5 1451 63.5
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 0.0e+00 1788.1 1451 64.2
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 1779.6 1453 62.4
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 1772.7 1452 62.3
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1772.3 1455 62.8
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 1766.9 1456 62.5
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1756.9 1449 62.7
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 1751.9 1454 62.5
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 1728.8 1450 61.4
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 1724.1 1450 61.3
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 1721.4 1450 61.1
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 1708.3 1448 61.4
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 1705.6 1456 61.3
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 1704.5 1455 61.4
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 1704.1 1445 61.9
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 1701.4 1298 67.1
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1663.7 1470 59.0
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1658.3 1599 56.3
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 1657.5 1449 59.3
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 1655.2 1448 58.8
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 1651.7 1457 59.4
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1648.3 1642 55.2
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1647.9 1473 58.1
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 1626.7 1459 58.1
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1626.3 1450 58.6
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 1621.3 1461 59.1
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 1621.3 1449 58.2
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 1618.6 1458 58.7
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 1616.3 1449 58.1
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 1613.6 1447 58.1
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1612.4 1450 58.3
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1611.3 1449 58.3
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 0.0e+00 1606.7 1366 60.5
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 1600.9 1460 58.2
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 1598.9 1473 58.1
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 1597.8 1463 57.7
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1595.5 1450 57.9
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1587.8 1451 57.8
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 1587.4 1458 57.3
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 1586.2 1455 57.5
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1584.3 1425 58.2
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 1584.3 1459 57.8
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1570.1 1448 57.2
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 1564.7 1449 56.5
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 1553.5 1454 55.7
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 1523.1 1457 55.5
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 1517.7 1460 54.6
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 1511.9 1458 56.9
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 0.0e+00 1496.1 1223 62.3
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 1495.7 1452 54.0
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1461.4 1450 53.5
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 0.0e+00 1453.7 1302 59.2
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 1453.3 1447 52.4
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1451.8 1447 52.2
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 0.0e+00 1444.9 1391 56.4
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 1435.6 1558 49.9
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 1431.8 1452 52.4
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 1431.4 1449 52.1
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1428.7 1449 52.1
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1428.7 1449 52.1
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 1428.7 1449 52.1
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 1425.2 1448 52.1
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 1417.5 1448 51.9
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 1409.0 1448 52.3
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 1354.0 1523 49.7
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1348.2 1147 60.2
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 1345.5 1488 50.7
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1338.9 1249 57.2
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 1322.0 1448 50.8
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1297.3 1449 48.9
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1296.6 1449 49.6
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 0.0e+00 1294.3 1293 52.7
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 0.0e+00 1258.0 1461 47.5
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 0.0e+00 1182.2 1452 45.7
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 0.0e+00 1163.7 1449 45.4
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1124.0 1607 42.6
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1123.2 775 75.5
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 0.0e+00 1115.5 945 60.4
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 3.4e-310 1068.9 834 66.4
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 1.1e-287 994.2 1040 51.0
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.2e-278 964.1 644 75.9
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 3.2e-276 956.1 828 62.9
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 1.7e-245 854.0 645 67.4
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.6e-201 707.2 612 60.8
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 1.5e-196 691.4 1519 32.6
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 5.2e-194 682.9 676 57.1
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 1.5e-193 681.4 1145 38.5
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 2.9e-192 677.2 562 63.0
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.2e-190 671.8 788 46.4
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.3e-189 668.3 643 55.7
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 5.2e-186 656.4 529 62.0
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 8.3e-184 649.0 352 92.9
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 7.3e-164 582.8 533 58.9
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 7.4e-148 529.6 1354 29.5
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 4.8e-147 526.9 528 53.2
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 5.1e-141 506.9 418 62.2
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 5.9e-137 493.4 428 59.6
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.2e-128 464.9 437 57.0
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 7.2e-127 459.9 432 57.9
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 3.0e-117 427.9 545 48.3
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 4.2e-111 407.5 451 48.3
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.1e-110 405.2 343 63.0
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 7.5e-108 396.7 331 60.7
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 1.0e-104 386.3 308 62.0
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 3.0e-101 374.8 338 56.8
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 2.7e-97 361.7 258 72.5
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 4.3e-79 301.2 441 38.8
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 1.1e-77 296.6 329 46.2
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 5.0e-72 277.7 274 53.3
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 2.8e-70 271.9 266 53.0
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 2.6e-68 265.4 1175 24.1
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 2.6e-52 212.2 181 61.3
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 8.4e-51 207.2 145 70.3
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.1e-50 206.8 205 51.2
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.6e-49 203.0 210 51.9
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 4.0e-45 188.3 142 65.5
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 1.9e-42 179.5 161 56.5
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 3.2e-42 178.7 180 53.9
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.6e-38 166.4 209 44.5
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 2.8e-38 165.6 187 48.7
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 3.7e-38 165.2 181 50.3
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 1.8e-37 162.9 178 51.1
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 1.7e-35 156.4 157 50.3
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 4.2e-34 151.8 226 43.4
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 7.9e-33 147.5 147 56.5
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 1.0e-32 147.1 256 35.2
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 1.1e-29 137.1 123 51.2
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.5e-26 124.8 104 56.7
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 5.1e-24 118.2 197 38.6
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 8.7e-24 117.5 85 64.7
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 5.9e-20 104.8 93 52.7
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.7e-19 103.2 75 62.7
Atru.chr6.2280 Acer truncatum HOM05D004010 ORTHO05D004995 2.2e-19 102.8 103 53.4
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 1.2e-17 97.1 92 50.0
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 1.8e-16 93.2 124 42.7
Phvul.004G009000 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.1e-16 91.7 110 45.5
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.1e-15 90.5 113 46.0
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 1.8e-13 83.2 52 75.0
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 2.0e-12 79.7 124 40.3
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 4.5e-12 78.6 53 73.6
Hma1.2p1_0078F.1_g040220 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 5.0e-11 75.1 62 59.7
Hma1.2p1_2269F.1_g318480 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 1.4e-10 73.6 59 61.0
Hma1.2p1_1397F.1_g280710 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 3.2e-10 72.4 59 59.3
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 6.7e-08 64.7 51 58.8
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 6.7e-08 64.7 51 58.8
FAN06G2394 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.5e-07 63.5 112 34.8


User provided reference genes

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