Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006561 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 9.3e-157 557.0 314 100.0
CSS0033341 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 9.2e-72 274.6 250 68.0
CSS0039493 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 9.2e-72 274.6 250 68.0
Rhsim01G0049400 Rhododendron simsii HOM05D003593 ORTHO05D004064 1.8e-67 260.4 250 61.2
Rhsim01G0266500 Rhododendron simsii HOM05D003593 ORTHO05D004064 6.0e-63 245.4 250 58.4
CSS0019003 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.1e-61 241.1 174 78.7
Dinv34117 Davidia involucrata HOM05D003593 ORTHO05D004064 6.2e-60 235.3 250 57.2
QL03p003697 Quercus lobata HOM05D003593 ORTHO05D004064 1.1e-59 234.6 250 57.2
Actinidia21188 Actinidia chinensis HOM05D003593 ORTHO05D004064 2.4e-59 233.4 250 58.0
GSVIVG01029263001 Vitis vinifera HOM05D003593 ORTHO05D004064 5.3e-59 232.3 260 54.2
Potri.018G133700 Populus trichocarpa HOM05D003593 ORTHO05D004064 5.8e-58 228.8 272 54.4
Lj1C63T22 Lonicera japonica HOM05D003593 ORTHO05D004064 3.8e-57 226.1 249 54.6
Ciclev10032601m.g Citrus clementina HOM05D003593 ORTHO05D004064 6.4e-57 225.3 260 54.6
Ciclev10021956m.g Citrus clementina HOM05D003593 ORTHO05D004064 8.4e-57 224.9 260 54.2
Nn8g40907 Nelumbo nucifera HOM05D003593 ORTHO05D004064 8.4e-57 224.9 250 54.0
vmacro03823 Vaccinium macrocarpon HOM05D003593 ORTHO05D004064 1.9e-56 223.8 336 49.1
CiPaw.07G199700 Carya illinoinensis HOM05D003593 ORTHO05D004064 4.2e-56 222.6 250 55.2
GSVIVG01025934001 Vitis vinifera HOM05D003593 ORTHO05D004064 4.2e-56 222.6 250 54.0
GSVIVG01033604001 Vitis vinifera HOM05D003593 ORTHO05D004064 5.4e-56 222.2 250 54.0
Atru.chr1.1670 Acer truncatum HOM05D003593 ORTHO05D004064 7.1e-56 221.9 278 52.2
CSS0014982 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 9.3e-56 221.5 174 74.1
CiPaw.08G030900 Carya illinoinensis HOM05D003593 ORTHO05D004064 1.2e-55 221.1 250 53.6
QL02p059634 Quercus lobata HOM05D003593 ORTHO05D004064 1.2e-55 221.1 278 51.8
Hma1.2p1_1219F.1_g267880 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 2.1e-55 220.3 250 61.2
Sabra18G0113300 Salix brachista HOM05D003593 ORTHO05D004064 2.1e-55 220.3 272 52.2
Cfa013477 Carpinus fangiana HOM05D003593 ORTHO05D004064 1.7e-54 217.2 251 52.6
Prupe.1G071200 Prunus persica HOM05D003593 ORTHO05D004064 1.7e-54 217.2 250 54.8
Prupe.2G148000 Prunus persica HOM05D003593 ORTHO05D004064 2.3e-54 216.9 250 53.6
Lalb_Chr12g0199721 Lupinus albus HOM05D003593 ORTHO05D004064 5.1e-54 215.7 272 57.7
MBI14_g31143_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 5.1e-54 215.7 251 52.2
ECA236G3417 Erigeron canadensis HOM05D003593 ORTHO05D004064 1.1e-53 214.5 250 53.2
FAN20G0230 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.5e-53 214.2 272 50.7
Hma1.2p1_0571F.1_g180780 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 1.5e-53 214.2 250 60.0
FAN15G1423 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.9e-53 213.8 272 50.7
RcHm_v2.0_Chr5g0056791 Rosa chinensis HOM05D003593 ORTHO05D004064 1.9e-53 213.8 272 51.1
Ca_21268_v3 Cicer arietinum L. HOM05D003593 ORTHO05D004064 3.3e-53 213.0 272 50.4
Duzib068G0242 Durio zibethinus HOM05D003593 ORTHO05D004064 3.3e-53 213.0 272 49.6
FvH4_2g10880 Fragaria vesca HOM05D003593 ORTHO05D004064 4.3e-53 212.6 272 50.7
CSS0041369 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 5.6e-53 212.2 210 59.5
FAN24G3005 Fragaria x ananassa HOM05D003593 ORTHO05D004064 5.6e-53 212.2 250 52.8
MD13G1238800 Malus domestica HOM05D003593 ORTHO05D004064 9.6e-53 211.5 250 53.6
QL03p003406 Quercus lobata HOM05D003593 ORTHO05D004064 1.6e-52 210.7 210 60.0
ClCG06G013760 Citrullus lanatus HOM05D003593 ORTHO05D004064 4.8e-52 209.1 259 51.4
Manes.16G049600 Manihot esculenta HOM05D003593 ORTHO05D004064 6.2e-52 208.8 250 59.6
PSO063G1703 Papaver somniferum HOM05D003593 ORTHO05D004064 6.2e-52 208.8 248 54.4
RcHm_v2.0_Chr6g0268981 Rosa chinensis HOM05D003593 ORTHO05D004064 6.2e-52 208.8 272 50.4
Eucgr.F03860 Eucalyptus grandis HOM05D003593 ORTHO05D004064 8.1e-52 208.4 252 54.0
TWI39G0804 Tripterygium wilfordii HOM05D003593 ORTHO05D004064 8.1e-52 208.4 277 50.9
Gohir.D10G156600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 1.1e-51 208.0 272 48.9
Gorai.011G174800 Gossypium raimondii HOM05D003593 ORTHO05D004064 1.1e-51 208.0 272 48.9
CsaV3_3G012080 Cucumis sativus L. HOM05D003593 ORTHO05D004064 1.4e-51 207.6 251 51.8
Gohir.A10G111600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 1.4e-51 207.6 272 48.9
Glyma.17G056700 Glycine max HOM05D003593 ORTHO05D004064 1.8e-51 207.2 272 50.7
Nitab4.5_0010661g0020 Nicotiana tabacum HOM05D003593 ORTHO05D004064 3.1e-51 206.5 273 50.2
Hund02205 Selenicereus undatus HOM05D003593 ORTHO05D004064 5.3e-51 205.7 250 54.8
Aqoxy5G00845 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 6.9e-51 205.3 250 51.6
COL.COLO4_13717 Corchorus olitorius HOM05D003593 ORTHO05D004064 6.9e-51 205.3 252 53.2
PGR142G0083 Punica granatum HOM05D003593 ORTHO05D004064 9.0e-51 204.9 250 50.8
Cpa.g.sc103.74 Carica papaya HOM05D003593 ORTHO05D004064 1.2e-50 204.5 254 52.4
Medtr8g027710 Medicago truncatula HOM05D003593 ORTHO05D004064 1.2e-50 204.5 274 50.4
Thecc.09G252700 Theobroma cacao HOM05D003593 ORTHO05D004064 1.5e-50 204.1 250 52.4
Glyma.14G032100 Glycine max HOM05D003593 ORTHO05D004064 2.0e-50 203.8 272 49.3
Solyc02g069380.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 2.0e-50 203.8 274 50.0
THA.LOC104810051 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 2.6e-50 203.4 250 53.2
Lsat_1_v5_gn_8_91320 Lactuca sativa HOM05D003593 ORTHO05D004064 3.4e-50 203.0 262 51.1
HanXRQChr04g0113781 Helianthus annuus HOM05D003593 ORTHO05D004064 4.5e-50 202.6 250 50.0
Nitab4.5_0000630g0070 Nicotiana tabacum HOM05D003593 ORTHO05D004064 7.6e-50 201.8 273 49.5
MSTRG.18306 Avicennia marina HOM05D003593 ORTHO05D004064 9.9e-50 201.4 252 56.3
Migut.D00405 Erythranthe guttata HOM05D003593 ORTHO05D004064 9.9e-50 201.4 252 53.6
VMungo1215G1259 Vigna mungo HOM05D003593 ORTHO05D004064 9.9e-50 201.4 272 48.5
Lj4g0003900 Lotus japonicus HOM05D003593 ORTHO05D004064 1.3e-49 201.1 272 50.4
PSO782G1623 Papaver somniferum HOM05D003593 ORTHO05D004064 1.3e-49 201.1 248 53.2
THA.LOC104810053 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 1.3e-49 201.1 250 52.8
arahy.Tifrunner.gnm1.ann1.PB4QPE Arachis hypogaea HOM05D003593 ORTHO05D004064 2.2e-49 200.3 274 49.6
TPR.G5405 Trifolium pratense HOM05D003593 ORTHO05D004064 2.2e-49 200.3 272 49.6
arahy.Tifrunner.gnm1.ann1.HDC0J8 Arachis hypogaea HOM05D003593 ORTHO05D004064 2.9e-49 199.9 274 49.6
MD08G1104600 Malus domestica HOM05D003593 ORTHO05D004064 2.9e-49 199.9 283 48.1
CAN.G1497.5 Capsicum annuum HOM05D003593 ORTHO05D004064 4.9e-49 199.1 274 50.0
CAN.G675.9 Capsicum annuum HOM05D003593 ORTHO05D004064 6.4e-49 198.7 274 49.3
AUR62035376 Chenopodium quinoa HOM05D003593 ORTHO05D004064 6.4e-49 198.7 251 50.6
Glyma.13G102300 Glycine max HOM05D003593 ORTHO05D004064 6.4e-49 198.7 272 49.3
Cc07_g18270 Coffea canephora HOM05D003593 ORTHO05D004064 8.4e-49 198.4 273 47.6
CANSAT01G0027 Cannabis sativa HOM05D003593 ORTHO05D004064 1.1e-48 198.0 275 48.7
TPR.G16420 Trifolium pratense HOM05D003593 ORTHO05D004064 1.9e-48 197.2 262 49.6
Medtr4g126960 Medicago truncatula HOM05D003593 ORTHO05D004064 2.4e-48 196.8 274 49.6
Peaxi162Scf00195g00123 Petunia axillaris HOM05D003593 ORTHO05D004064 2.4e-48 196.8 273 48.7
Phvul.003G138700 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 7.1e-48 195.3 272 47.4
Phvul.003G138826 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 9.3e-48 194.9 272 47.4
Phvul.003G139226 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 9.3e-48 194.9 272 47.4
ATR0580G077 Amborella trichopoda HOM05D003593 ORTHO05D004064 1.6e-47 194.1 251 49.0
MSTRG.21503 Avicennia marina HOM05D003593 ORTHO05D004064 1.6e-47 194.1 250 50.8
Lsat_1_v5_gn_9_9120 Lactuca sativa HOM05D003593 ORTHO05D004064 1.6e-47 194.1 276 50.0
Sc03g0009620 Simmondsia chinensis HOM05D003593 ORTHO05D004064 1.6e-47 194.1 259 48.6
BcaC07g39887 Brassica carinata HOM05D002600 ORTHO05D003013 2.7e-47 193.4 273 49.5
BolC8t50717H Brassica oleracea HOM05D003593 ORTHO05D004064 2.7e-47 193.4 273 49.5
CARHR165650 Cardamine hirsuta HOM05D003593 ORTHO05D004064 3.5e-47 193.0 253 49.0
MELO3C006423.2 Cucumis melo HOM05D003593 ORTHO05D004064 4.6e-47 192.6 211 55.5
A09p48590 Brassica napus HOM05D003593 ORTHO05D004064 1.0e-46 191.4 273 48.4
BraA09t40311Z Brassica rapa HOM05D003593 ORTHO05D004064 1.0e-46 191.4 273 48.4
MBI16_g31002_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 1.3e-46 191.0 251 49.4
SalBow4G0244 Salvia bowleyana HOM05D003593 ORTHO05D004064 1.3e-46 191.0 250 49.6
EL10Ac5g11509 Beta vulgaris HOM05D003593 ORTHO05D004064 1.8e-46 190.7 250 48.0
C08p30910 Brassica napus HOM05D003593 ORTHO05D004064 3.0e-46 189.9 273 48.7
FAN02G4054 Fragaria x ananassa HOM05D003593 ORTHO05D004064 3.0e-46 189.9 272 53.3
DCAR_007335 Daucus carota HOM05D003593 ORTHO05D002993 3.9e-46 189.5 248 57.3
Sp1g35080 Schrenkiella parvula HOM05D003593 ORTHO05D004064 5.1e-46 189.1 250 48.8
FAN05G2468 Fragaria x ananassa HOM05D003593 ORTHO05D004064 6.7e-46 188.7 272 52.9
C08p30920 Brassica napus HOM05D003593 ORTHO05D004064 8.7e-46 188.3 275 49.1
Oeu035605.1 Olea europaea HOM05D003593 ORTHO05D004064 1.9e-45 187.2 251 49.4
Peaxi162Scf00956g00310 Petunia axillaris HOM05D003593 ORTHO05D004064 1.9e-45 187.2 249 49.8
Thhalv10010672m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 3.3e-45 186.4 250 49.2
Sp5g06880 Schrenkiella parvula HOM05D003593 ORTHO05D004064 4.3e-45 186.0 273 47.6
AT3G55600 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 5.6e-45 185.7 250 47.6
FvH4_6g47540 Fragaria vesca HOM05D003593 ORTHO05D004064 9.6e-45 184.9 275 52.7
FAN09G2587 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.1e-44 183.7 272 52.2
PSO170G4544 Papaver somniferum HOM05D003593 ORTHO05D004064 2.1e-44 183.7 252 50.0
AL5G36800 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 2.8e-44 183.3 250 47.6
Nitab4.5_0005797g0010 Nicotiana tabacum HOM05D003593 ORTHO05D004064 2.8e-44 183.3 273 53.5
AUR62029138 Chenopodium quinoa HOM05D003593 ORTHO05D004064 4.8e-44 182.6 237 50.2
Sopen02g013070 Solanum pennellii HOM05D003593 ORTHO05D004064 6.2e-44 182.2 251 47.4
FAN09G1792 Fragaria x ananassa HOM05D003593 ORTHO05D004064 8.1e-44 181.8 275 52.4
FAN09G2125 Fragaria x ananassa HOM05D003593 ORTHO05D004064 8.1e-44 181.8 275 52.4
Psat1g089640 Pisum sativum HOM05D003593 ORTHO05D004064 1.1e-43 181.4 211 54.5
SGA_v2.0_scaffold10G05150 Striga asiatica HOM05D003593 ORTHO05D004064 1.1e-43 181.4 280 46.1
Carub.0003s3082 Capsella rubella HOM05D003593 ORTHO05D004064 4.0e-43 179.5 253 46.6
Thhalv10011761m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 6.9e-43 178.7 253 46.2
AUR62015608 Chenopodium quinoa HOM05D003593 ORTHO05D004064 2.0e-42 177.2 246 46.7
Psat2g189400 Pisum sativum HOM05D003593 ORTHO05D004064 4.5e-42 176.0 211 52.1
FAN14G2581 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.3e-41 174.5 213 52.6
Sopen02g018530 Solanum pennellii HOM05D003593 ORTHO05D004064 1.2e-39 167.9 223 50.2
Manes.03G101800 Manihot esculenta HOM05D003593 ORTHO05D004064 2.1e-39 167.2 246 46.3
HanXRQChr10g0281101 Helianthus annuus HOM05D003593 ORTHO05D004064 6.0e-39 165.6 224 50.0
Zm00001eb252050 Zea mays HOM05D003593 ORTHO05D004064 7.9e-39 165.2 250 44.4
AT1G54110 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 1.0e-38 164.9 273 42.5
Os08g0533700 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 1.0e-38 164.9 276 42.4
Manes.15G093801 Manihot esculenta HOM05D003593 ORTHO05D004064 1.3e-38 164.5 286 44.1
Zm00001eb036800 Zea mays HOM05D003593 ORTHO05D004064 1.1e-37 161.4 273 42.5
unitig_22.g5286 Utricularia gibba HOM05D003593 ORTHO05D004064 1.9e-37 160.6 250 44.0
AL1G62820 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 2.5e-37 160.2 210 49.5
PSO170G1127 Papaver somniferum HOM05D003593 ORTHO05D004064 4.3e-37 159.5 204 54.4
HPP92_006993 Vanilla planifolia HOM05D003593 ORTHO05D004064 4.3e-37 159.5 262 46.6
AUR62029320 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.3e-36 157.9 223 46.6
Aa31LG5G19840 Aethionema arabicum HOM05D003593 ORTHO05D004064 2.8e-36 156.8 224 45.5
CDE06G1796 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 3.7e-36 156.4 242 44.6
CDE02G1962 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 4.8e-36 156.0 211 48.8
CSS0030751 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 4.1e-35 152.9 147 60.5
BcaB01g00076 Brassica carinata HOM05D003593 ORTHO05D004064 5.3e-35 152.5 247 44.5
Os09g0272500 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 2.0e-34 150.6 253 41.5
Sed0025908 Sechium edule HOM05D003593 ORTHO05D004064 5.9e-34 149.1 176 52.3
Sed0017744 Sechium edule HOM05D003593 ORTHO05D004064 1.0e-33 148.3 253 40.3
Rhsim08G0153900 Rhododendron simsii HOM05D003593 ORTHO05D004064 4.2e-32 142.9 263 39.9
Peaxi162Scf00074g00739 Petunia axillaris HOM05D003593 ORTHO05D004064 2.3e-30 137.1 273 40.7
Thecc.10G141700 Theobroma cacao HOM05D003593 ORTHO05D004064 1.1e-29 134.8 180 49.4
MD16G1244100 Malus domestica HOM05D003593 ORTHO05D004064 1.4e-27 127.9 142 53.5
BcaC07g39889 Brassica carinata HOM05D003593 ORTHO05D004064 1.8e-27 127.5 196 43.9
Actinidia14176 Actinidia chinensis HOM05D003593 ORTHO05D004064 2.6e-26 123.6 161 50.3
Ah.04g164950 Amaranthus hybridus HOM05D003593 ORTHO05D004064 3.4e-26 123.2 282 35.5
AL1G48760 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.2e-23 114.8 190 41.1
AL6G40520 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.6e-23 114.4 191 40.8
SMO288G0003 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 1.5e-21 107.8 255 33.3
SEGI_30783 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 3.3e-21 106.7 198 40.4
SMO352G0089 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 9.7e-21 105.1 250 34.0
CSS0001594 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.8e-20 103.6 72 83.3
Lj2g0027873 Lotus japonicus HOM05D003593 ORTHO05D004064 5.3e-19 99.4 148 45.9
Pp3c17_5110 Physcomitrium patens HOM05D003593 ORTHO05D004064 2.2e-17 94.0 296 30.7
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 3.8e-17 93.2 101 53.5
MD16G1244000 Malus domestica HOM05D003593 ORTHO05D004064 5.0e-17 92.8 104 53.8
SEGI_34697 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 5.0e-17 92.8 126 43.7
Haze_22055 Corylus avellana HOM05D003593 ORTHO05D004064 2.5e-16 90.5 207 36.7
AagrBONN_evm.TU.Sc2ySwM_368.144 Anthoceros agrestis HOM05D003593 ORTHO05D004064 5.5e-16 89.4 223 35.4
Glyma.02G282202 Glycine max HOM05D003593 ORTHO05D004064 7.2e-16 89.0 68 66.2
Atru.chr10.1467 Acer truncatum HOM05D003593 ORTHO05D004064 1.6e-15 87.8 60 73.3
Mapoly0001s0213 Marchantia polymorpha HOM05D003593 ORTHO05D004064 7.9e-15 85.5 256 30.5
Haze_22057 Corylus avellana HOM05D003593 ORTHO05D004064 8.8e-14 82.0 51 82.4
Os02g0306100 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 2.0e-13 80.9 149 41.6
Os08g0534350 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 2.6e-13 80.5 149 41.6
Os08g0535000 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 2.6e-13 80.5 149 41.6
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 4.1e-11 73.2 132 39.4
Lsat_1_v5_gn_7_57621 Lactuca sativa HOM05D001776 ORTHO05D001771 5.9e-10 69.3 63 61.9
CBR_g26495 Chara braunii HOM05D003593 ORTHO05D004064 1.0e-09 68.6 264 29.5
C04p36780 Brassica napus HOM05D003593 ORTHO05D004064 3.8e-09 66.6 76 53.9
MBI16_g09339_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 9.4e-08 62.0 69 52.2
Aqoxy5G03192 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 2.1e-07 60.8 225 29.3
arahy.Tifrunner.gnm1.ann1.0CTM64 Arachis hypogaea HOM05D003593 ORTHO05D004064 2.1e-07 60.8 209 30.1
MBI16_g41745_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 2.7e-07 60.5 58 58.6


User provided reference genes

Program Settings