Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006536 Camellia sinensis var. sinensis HOM05D007598 ORTHO05D009632 2.2e-35 151.8 78 100.0
CSS0035986 Camellia sinensis var. sinensis HOM05D007598 ORTHO05D009632 5.5e-34 147.1 79 98.7
Actinidia39580 Actinidia chinensis HOM05D007598 ORTHO05D009632 5.2e-24 114.0 83 78.3
Dinv32243 Davidia involucrata HOM05D007598 ORTHO05D009632 4.4e-23 110.9 79 75.9
Actinidia07703 Actinidia chinensis HOM05D007598 ORTHO05D009632 7.5e-23 110.2 85 74.1
Nitab4.5_0000420g0040 Nicotiana tabacum HOM05D007598 ORTHO05D009632 6.3e-22 107.1 80 72.5
Rhsim02G0159000 Rhododendron simsii HOM05D007598 ORTHO05D009632 1.1e-21 106.3 77 72.7
Thecc.06G149600 Theobroma cacao HOM05D007598 ORTHO05D009632 1.8e-21 105.5 82 69.5
Carub.0004s1626 Capsella rubella HOM05D007598 ORTHO05D009632 1.6e-20 102.4 86 64.0
arahy.Tifrunner.gnm1.ann1.A3G0A3 Arachis hypogaea HOM05D007598 ORTHO05D009632 2.0e-20 102.1 81 67.9
AUR62002748 Chenopodium quinoa HOM05D007598 ORTHO05D009632 2.0e-20 102.1 76 71.1
Aa31LG10G6810 Aethionema arabicum HOM05D007598 ORTHO05D009632 2.7e-20 101.7 86 64.0
Manes.17G070801 Manihot esculenta HOM05D007598 ORTHO05D009632 2.7e-20 101.7 92 60.9
PGSC0003DMG400021093 Solanum tuberosum HOM05D007598 ORTHO05D009632 3.5e-20 101.3 72 72.2
THA.LOC104820651 Tarenaya hassleriana HOM05D007598 ORTHO05D009632 3.5e-20 101.3 88 63.6
CARHR128680 Cardamine hirsuta HOM05D007598 ORTHO05D009632 4.5e-20 100.9 85 63.5
arahy.Tifrunner.gnm1.ann1.KTXA2U Arachis hypogaea HOM05D007598 ORTHO05D009632 5.9e-20 100.5 81 66.7
AUR62030196 Chenopodium quinoa HOM05D007598 ORTHO05D009632 5.9e-20 100.5 76 71.1
CAN.G702.32 Capsicum annuum HOM05D007598 ORTHO05D009632 1.3e-19 99.4 64 75.0
AT2G34585 Arabidopsis thaliana HOM05D007598 ORTHO05D009632 1.7e-19 99.0 84 63.1
BcaB06g28784 Brassica carinata HOM05D007598 ORTHO05D009632 1.7e-19 99.0 85 63.5
CiPaw.10G091200 Carya illinoinensis HOM05D007598 ORTHO05D009632 1.7e-19 99.0 68 75.0
FvH4_3g05470 Fragaria vesca HOM05D007598 ORTHO05D009632 1.7e-19 99.0 82 64.6
Nitab4.5_0006887g0010 Nicotiana tabacum HOM05D007598 ORTHO05D009632 1.7e-19 99.0 73 71.2
Lsat_1_v5_gn_7_28481 Lactuca sativa HOM05D007598 ORTHO05D009632 2.3e-19 98.6 78 64.1
Gohir.D10G042400 Gossypium hirsutum HOM05D007598 ORTHO05D009632 2.9e-19 98.2 59 81.4
Potri.011G084300 Populus trichocarpa HOM05D007598 ORTHO05D009632 2.9e-19 98.2 60 81.7
A04p26490 Brassica napus HOM05D007598 ORTHO05D009632 3.8e-19 97.8 86 61.6
C04p63910 Brassica napus HOM05D007598 ORTHO05D009632 3.8e-19 97.8 86 61.6
BolC4t27858H Brassica oleracea HOM05D007598 ORTHO05D009632 3.8e-19 97.8 86 61.6
BraA04t18153Z Brassica rapa HOM05D007598 ORTHO05D009632 3.8e-19 97.8 86 61.6
AL4G30560 Arabidopsis lyrata HOM05D007598 ORTHO05D009632 5.0e-19 97.4 84 63.1
Sopen02g019560 Solanum pennellii HOM05D007598 ORTHO05D009632 5.0e-19 97.4 74 67.6
Psat1g188680 Pisum sativum HOM05D007598 ORTHO05D009632 8.6e-19 96.7 73 68.5
EL10Ac8g19673 Beta vulgaris HOM05D007598 ORTHO05D009632 1.1e-18 96.3 70 72.9
Sabra11G0066800 Salix brachista HOM05D007598 ORTHO05D009632 1.1e-18 96.3 60 80.0
MELO3C007128.2 Cucumis melo HOM05D007598 ORTHO05D009632 1.5e-18 95.9 87 64.4
DCAR_027909 Daucus carota HOM05D007598 ORTHO05D009632 1.5e-18 95.9 69 73.9
Thhalv10017600m.g Eutrema salsugineum HOM05D007598 ORTHO05D009632 1.5e-18 95.9 84 60.7
Lj6g0001552 Lotus japonicus HOM05D007598 ORTHO05D009632 1.5e-18 95.9 78 61.5
ClCG01G024670 Citrullus lanatus HOM05D007598 ORTHO05D009632 1.9e-18 95.5 86 61.6
Duzib235G0096 Durio zibethinus HOM05D007598 ORTHO05D009632 1.9e-18 95.5 83 63.9
HanXRQChr15g0480881 Helianthus annuus HOM05D007598 ORTHO05D009632 1.9e-18 95.5 79 67.1
Sed0007826 Sechium edule HOM05D007598 ORTHO05D009632 1.9e-18 95.5 84 64.3
CsaV3_6G051780 Cucumis sativus L. HOM05D007598 ORTHO05D009632 2.5e-18 95.1 87 62.1
MD05G1283100 Malus domestica HOM05D007598 ORTHO05D009632 2.5e-18 95.1 64 78.1
Nn3g20182 Nelumbo nucifera HOM05D007598 ORTHO05D009632 2.5e-18 95.1 66 74.2
Prupe.4G081500 Prunus persica HOM05D007598 ORTHO05D009632 2.5e-18 95.1 89 61.8
Aqoxy7G00246 Aquilegia oxysepala HOM05D007598 ORTHO05D009632 3.3e-18 94.7 61 77.0
Cfa000936 Carpinus fangiana HOM05D007598 ORTHO05D009632 3.3e-18 94.7 60 80.0
Cc00_g10360 Coffea canephora HOM05D007598 ORTHO05D009632 3.3e-18 94.7 80 65.0
Sp4g16850 Schrenkiella parvula HOM05D007598 ORTHO05D009632 4.2e-18 94.4 85 61.2
Ca_00537_v3 Cicer arietinum L. HOM05D007598 ORTHO05D009632 5.5e-18 94.0 78 62.8
Solyc02g070470.1 Solanum lycopersicum HOM05D007598 ORTHO05D009632 5.5e-18 94.0 74 66.2
FAN11G3574 Fragaria x ananassa HOM05D007598 ORTHO05D009632 7.2e-18 93.6 68 73.5
FAN21G2813 Fragaria x ananassa HOM05D007598 ORTHO05D009632 7.2e-18 93.6 57 82.5
FAN16G2639 Fragaria x ananassa HOM05D007598 ORTHO05D009632 9.5e-18 93.2 74 68.9
Nitab4.5_0002744g0030 Nicotiana tabacum HOM05D007598 ORTHO05D009632 9.5e-18 93.2 74 64.9
QL05p057697 Quercus lobata HOM05D007598 ORTHO05D009632 9.5e-18 93.2 86 61.6
Glyma.13G218700 Glycine max HOM05D007598 ORTHO05D009632 1.2e-17 92.8 57 77.2
Atru.chr10.1775 Acer truncatum HOM05D007598 ORTHO05D009632 1.6e-17 92.4 80 62.5
Ah.14g086510 Amaranthus hybridus HOM05D007598 ORTHO05D009632 1.6e-17 92.4 71 69.0
HanXRQChr04g0114301 Helianthus annuus HOM05D007598 ORTHO05D009632 1.6e-17 92.4 75 65.3
Cpa.g.sc170.27 Carica papaya HOM05D007598 ORTHO05D009632 2.8e-17 91.7 86 61.6
Lalb_Chr20g0117881 Lupinus albus HOM05D007598 ORTHO05D009632 2.8e-17 91.7 77 63.6
FAN25G0892 Fragaria x ananassa HOM05D007598 ORTHO05D009632 3.6e-17 91.3 65 72.3
Medtr2g019240 Medicago truncatula HOM05D007598 ORTHO05D009632 3.6e-17 91.3 63 69.8
Phvul.006G165400 Phaseolus vulgaris HOM05D007598 ORTHO05D009632 4.7e-17 90.9 67 68.7
Ciclev10017916m.g Citrus clementina HOM05D007598 ORTHO05D009632 6.1e-17 90.5 74 66.2
Glyma.15G093500 Glycine max HOM05D007598 ORTHO05D009632 6.1e-17 90.5 62 71.0
MD10G1261400 Malus domestica HOM05D007598 ORTHO05D009632 6.1e-17 90.5 60 76.7
Rhsim13G0114100 Rhododendron simsii HOM05D007598 ORTHO05D009632 6.1e-17 90.5 78 65.4
SalBow8G5536 Salvia bowleyana HOM05D007598 ORTHO05D009632 8.0e-17 90.1 63 73.0
PGR042G1521 Punica granatum HOM05D007598 ORTHO05D009632 1.0e-16 89.7 78 64.1
CANSAT35G0825 Cannabis sativa HOM05D007598 ORTHO05D009632 2.3e-16 88.6 92 57.6
PSO541G2526 Papaver somniferum HOM05D007598 ORTHO05D009632 3.0e-16 88.2 88 56.8
TAR626G0451 Trochodendron aralioides HOM05D007598 ORTHO05D009632 3.0e-16 88.2 60 75.0
Sc05g0006160 Simmondsia chinensis HOM05D007598 ORTHO05D009632 5.2e-16 87.4 77 59.7
RcHm_v2.0_Chr5g0014281 Rosa chinensis HOM05D007598 ORTHO05D009632 8.9e-16 86.7 73 65.8
Migut.M01992 Erythranthe guttata HOM05D007598 ORTHO05D009632 1.2e-15 86.3 79 60.8
Migut.M00903 Erythranthe guttata HOM05D007598 ORTHO05D009632 2.6e-15 85.1 79 59.5
unitig_749.g13736 Utricularia gibba HOM05D007598 ORTHO05D009632 2.6e-15 85.1 58 75.9
MBI02_g15148_MAGBIO Magnolia biondii HOM05D007598 ORTHO05D009632 5.7e-15 84.0 57 73.7
TWI53G0871 Tripterygium wilfordii HOM05D007598 ORTHO05D009632 9.8e-15 83.2 84 58.3
ECA236G0778 Erigeron canadensis HOM05D007598 ORTHO05D009632 2.2e-14 82.0 46 82.6
ATR1098G093 Amborella trichopoda HOM05D007598 ORTHO05D009632 3.7e-14 81.3 71 59.2
COL.COLO4_31062 Corchorus olitorius HOM05D007598 ORTHO05D009632 3.7e-14 81.3 78 57.7
HPP92_000988 Vanilla planifolia HOM05D007598 ORTHO05D009632 1.1e-13 79.7 70 60.0
PGSC0003DMG400012092 Solanum tuberosum HOM05D007598 ORTHO05D009632 3.2e-13 78.2 50 74.0
Os07g0154300 Oryza sativa ssp. japonica HOM05D007598 ORTHO05D009632 2.0e-12 75.5 78 55.1
SEGI_36626 Sequoiadendron giganteum HOM05D007598 ORTHO05D009632 3.5e-12 74.7 48 70.8
Mapoly0055s0099 Marchantia polymorpha HOM05D007598 ORTHO05D009632 1.0e-11 73.2 49 67.3
Zm00001eb117510 Zea mays HOM05D007598 ORTHO05D009632 1.0e-11 73.2 78 55.1
Actinidia16706 Actinidia chinensis HOM05D000667 ORTHO05D004096 1.7e-11 72.4 67 62.7
Pp3c14_11250 Physcomitrium patens HOM05D007598 ORTHO05D009632 1.2e-09 66.2 71 47.9
Pp3c10_22390 Physcomitrium patens HOM05D007598 ORTHO05D009632 1.3e-06 56.2 63 47.6
SEGI_00564 Sequoiadendron giganteum HOM05D007598 ORTHO05D009632 1.3e-06 56.2 49 53.1


User provided reference genes

Program Settings