Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006532 Camellia sinensis var. sinensis HOM05D000012 ORTHO05D017217 6.4e-67 257.3 132 100.0
CSS0027204 Camellia sinensis var. sinensis HOM05D000012 ORTHO05D017217 1.9e-42 176.0 139 71.9
CSS0049811 Camellia sinensis var. sinensis HOM05D000012 ORTHO05D017217 8.7e-32 140.6 86 80.2
Actinidia01105 Actinidia chinensis HOM05D000012 ORTHO05D017217 3.4e-28 128.6 74 85.1
Prupe.6G272600 Prunus persica HOM05D000012 ORTHO05D003972 6.7e-24 114.4 71 74.6
Atru.chr8.2213 Acer truncatum HOM05D000012 ORTHO05D003972 1.3e-22 110.2 71 73.2
Actinidia01104 Actinidia chinensis HOM05D000012 ORTHO05D003972 1.2e-20 103.6 87 59.8
CANSAT35G1456 Cannabis sativa HOM05D000012 ORTHO05D003972 1.5e-20 103.2 74 66.2
MD04G1148300 Malus domestica HOM05D000012 ORTHO05D003972 1.0e-19 100.5 67 68.7
QL07p035973 Quercus lobata HOM05D000012 ORTHO05D003972 2.2e-19 99.4 70 71.4
Migut.J00191 Erythranthe guttata HOM05D000012 ORTHO05D003972 5.0e-19 98.2 77 59.7
Prupe.6G272500 Prunus persica HOM05D000012 ORTHO05D003972 1.1e-18 97.1 69 65.2
SalBow5G4030 Salvia bowleyana HOM05D000012 ORTHO05D003972 1.9e-18 96.3 74 64.9
Cc06_g01560 Coffea canephora HOM05D000012 ORTHO05D003972 3.2e-18 95.5 97 54.6
Dinv37071 Davidia involucrata HOM05D001221 ORTHO05D009285 4.2e-18 95.1 78 64.1
QL07p035967 Quercus lobata HOM05D000012 ORTHO05D003972 2.7e-17 92.4 70 65.7
Ciclev10013488m.g Citrus clementina HOM05D000012 ORTHO05D003972 6.1e-17 91.3 71 62.0
QL07p035998 Quercus lobata HOM05D000012 ORTHO05D003972 5.2e-16 88.2 67 65.7
Ciclev10013636m.g Citrus clementina HOM05D000012 ORTHO05D003972 1.5e-15 86.7 73 56.2
Nn2g11409 Nelumbo nucifera HOM05D000012 ORTHO05D003972 2.0e-15 86.3 73 56.2
QL07p035993 Quercus lobata HOM05D000012 ORTHO05D003972 4.4e-15 85.1 70 62.9
CANSAT35G1359 Cannabis sativa HOM05D000012 ORTHO05D003972 5.7e-15 84.7 70 55.7
Lj2A78G30 Lonicera japonica HOM05D000012 ORTHO05D003972 5.7e-15 84.7 73 57.5
Lj3A127T4 Lonicera japonica HOM05D000012 ORTHO05D003972 5.7e-15 84.7 73 57.5
Cfa013509 Carpinus fangiana HOM05D000012 ORTHO05D003972 9.7e-15 84.0 68 66.2
Cpa.g.sc163.8 Carica papaya HOM05D000012 ORTHO05D003972 8.2e-14 80.9 86 50.0
AL4G35100 Arabidopsis lyrata HOM05D000012 ORTHO05D003972 3.1e-13 79.0 73 57.5
HanXRQChr08g0220531 Helianthus annuus HOM05D000012 ORTHO05D003972 3.1e-13 79.0 70 54.3
DCAR_018721 Daucus carota HOM05D000012 ORTHO05D003972 4.1e-13 78.6 70 55.7
AUR62021861 Chenopodium quinoa HOM05D000012 ORTHO05D003972 5.3e-13 78.2 70 51.4
Duzib093G0916 Durio zibethinus HOM05D000012 ORTHO05D003972 5.3e-13 78.2 84 51.2
Thhalv10016530m.g Eutrema salsugineum HOM05D000012 ORTHO05D003972 5.3e-13 78.2 70 58.6
Carub.0004s2007 Capsella rubella HOM05D000012 ORTHO05D003972 7.0e-13 77.8 70 57.1
unitig_8.g3230 Utricularia gibba HOM05D007005 ORTHO05D008799 9.1e-13 77.4 70 57.1
EL10Ac8g20188 Beta vulgaris HOM05D000012 ORTHO05D003972 1.2e-12 77.0 70 50.0
Lsat_1_v5_gn_8_99941 Lactuca sativa HOM05D000012 ORTHO05D003972 1.2e-12 77.0 70 51.4
ECA236G1283 Erigeron canadensis HOM05D000012 ORTHO05D000567 2.0e-12 76.3 70 54.3
A05p07940 Brassica napus HOM05D000012 ORTHO05D003972 3.5e-12 75.5 70 54.3
BraA05t19759Z Brassica rapa HOM05D000012 ORTHO05D003972 3.5e-12 75.5 70 54.3
CARHR132680 Cardamine hirsuta HOM05D000012 ORTHO05D003972 4.5e-12 75.1 73 54.8
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 4.5e-12 75.1 70 52.9
Oeu030521.1 Olea europaea HOM05D000012 ORTHO05D003972 4.5e-12 75.1 80 52.5
Cfa017238 Carpinus fangiana HOM05D000012 ORTHO05D003972 5.9e-12 74.7 106 47.2
BcaC02g11953 Brassica carinata HOM05D000012 ORTHO05D003972 7.7e-12 74.3 73 52.1
BolC4t22566H Brassica oleracea HOM05D000012 ORTHO05D003972 7.7e-12 74.3 73 52.1
Migut.J00198 Erythranthe guttata HOM05D000012 ORTHO05D003972 1.0e-11 73.9 70 52.9
BcaB02g09218 Brassica carinata HOM05D000012 ORTHO05D003972 1.3e-11 73.6 73 52.1
AUR62012791 Chenopodium quinoa HOM05D000012 ORTHO05D003972 1.7e-11 73.2 78 47.4
AUR62012793 Chenopodium quinoa HOM05D000012 ORTHO05D003972 1.7e-11 73.2 78 47.4
Lsat_1_v5_gn_2_3761 Lactuca sativa HOM05D000012 ORTHO05D003972 1.7e-11 73.2 67 56.7
CiPaw.10G155000 Carya illinoinensis HOM05D000012 ORTHO05D003972 2.2e-11 72.8 71 54.9
HanXRQChr08g0211441 Helianthus annuus HOM05D000012 ORTHO05D003972 2.2e-11 72.8 70 51.4
SGA_v2.0_scaffold85G26754 Striga asiatica HOM05D001221 ORTHO05D009285 2.2e-11 72.8 86 45.3
HanXRQChr04g0102001 Helianthus annuus HOM05D000012 ORTHO05D003972 5.0e-11 71.6 91 47.3
QL07p035978 Quercus lobata HOM05D000012 ORTHO05D003972 5.0e-11 71.6 56 64.3
CANSAT35G0460 Cannabis sativa HOM05D000012 ORTHO05D003972 6.5e-11 71.2 70 45.7
Cc00_g17610 Coffea canephora HOM05D000012 ORTHO05D017217 6.5e-11 71.2 72 51.4
TAR636G0546 Trochodendron aralioides HOM05D000012 ORTHO05D003972 6.5e-11 71.2 65 58.5
Cc11_g06880 Coffea canephora HOM05D000012 ORTHO05D003972 1.5e-10 70.1 70 54.3
THA.LOC104806521 Tarenaya hassleriana HOM05D000012 ORTHO05D003972 1.5e-10 70.1 83 50.6
C04p09590 Brassica napus HOM05D000012 ORTHO05D003972 2.5e-10 69.3 71 52.1
Migut.J00193 Erythranthe guttata HOM05D000012 ORTHO05D003972 4.2e-10 68.6 71 46.5
SalBow1G4398 Salvia bowleyana HOM05D000012 ORTHO05D003972 4.2e-10 68.6 70 51.4
SalBow5G4197 Salvia bowleyana HOM05D000012 ORTHO05D003972 5.5e-10 68.2 72 55.6
SalBow5G5134 Salvia bowleyana HOM05D000012 ORTHO05D003972 5.5e-10 68.2 72 55.6
Aa31sc236G20 Aethionema arabicum HOM05D000012 ORTHO05D003972 9.4e-10 67.4 81 49.4
Cc11_g06890 Coffea canephora HOM05D000012 ORTHO05D003972 9.4e-10 67.4 70 50.0
AUR62012790 Chenopodium quinoa HOM05D000012 ORTHO05D003972 1.2e-09 67.0 66 47.0
AUR62021863 Chenopodium quinoa HOM05D000012 ORTHO05D003972 1.2e-09 67.0 66 47.0
SalBow5G4867 Salvia bowleyana HOM05D000012 ORTHO05D003972 1.2e-09 67.0 70 47.1
AT2G38100 Arabidopsis thaliana HOM05D000012 ORTHO05D003972 2.1e-09 66.2 57 63.2
Sp4g20420 Schrenkiella parvula HOM05D000012 ORTHO05D003972 2.7e-09 65.9 57 61.4
Migut.J00197 Erythranthe guttata HOM05D000012 ORTHO05D003972 3.6e-09 65.5 56 53.6
RcHm_v2.0_Chr5g0061221 Rosa chinensis HOM05D000012 ORTHO05D017217 3.6e-09 65.5 62 53.2
AUR62021862 Chenopodium quinoa HOM05D000012 ORTHO05D003972 6.1e-09 64.7 66 43.9
Nitab4.5_0001264g0210 Nicotiana tabacum HOM05D000012 ORTHO05D003972 1.0e-08 63.9 59 50.8
CANSAT35G0501 Cannabis sativa HOM05D000012 ORTHO05D003972 1.8e-08 63.2 70 47.1
SalBow5G4000 Salvia bowleyana HOM05D000012 ORTHO05D003972 1.8e-08 63.2 70 45.7
Cc11_g10430 Coffea canephora HOM05D000012 ORTHO05D003972 2.3e-08 62.8 67 52.2
Actinidia18445 Actinidia chinensis HOM05D000012 ORTHO05D003972 4.0e-08 62.0 82 41.5
Haze_20965 Corylus avellana HOM05D000012 ORTHO05D003972 4.0e-08 62.0 59 55.9
Nitab4.5_0002650g0020 Nicotiana tabacum HOM05D000012 ORTHO05D003972 4.0e-08 62.0 68 50.0
SalBow5G5066 Salvia bowleyana HOM05D000012 ORTHO05D003972 6.7e-08 61.2 71 42.3
SalBow5G0084 Salvia bowleyana HOM05D000103 ORTHO05D017217 8.8e-08 60.8 70 44.3
SalBow5G2554 Salvia bowleyana HOM05D000012 ORTHO05D003972 8.8e-08 60.8 71 42.3
SalBow5G2834 Salvia bowleyana HOM05D000012 ORTHO05D003972 8.8e-08 60.8 71 42.3
SalBow5G4460 Salvia bowleyana HOM05D000012 ORTHO05D003972 8.8e-08 60.8 71 42.3
Prupe.6G272400 Prunus persica HOM05D000012 ORTHO05D003972 1.5e-07 60.1 83 41.0
SalBow5G4034 Salvia bowleyana HOM05D000012 ORTHO05D003972 1.5e-07 60.1 71 43.7
Haze_20968 Corylus avellana HOM05D000012 ORTHO05D003972 2.6e-07 59.3 74 54.1
CANSAT35G0684 Cannabis sativa HOM05D000012 ORTHO05D003972 4.4e-07 58.5 70 44.3
SalBow5G1091 Salvia bowleyana HOM05D000012 ORTHO05D003972 7.5e-07 57.8 93 39.8
SalBow5G2865 Salvia bowleyana HOM05D000012 ORTHO05D003972 7.5e-07 57.8 71 42.3
FvH4_6g11880 Fragaria vesca HOM05D000012 ORTHO05D003972 9.7e-07 57.4 80 40.0
FAN14G2604 Fragaria x ananassa HOM05D000012 ORTHO05D003972 9.7e-07 57.4 80 40.0
FAN14G4999 Fragaria x ananassa HOM05D000012 ORTHO05D003972 9.7e-07 57.4 80 40.0
EL10Ac8g20185 Beta vulgaris HOM05D000012 ORTHO05D003972 1.7e-06 56.6 68 44.1
FAN02G1045 Fragaria x ananassa HOM05D000012 ORTHO05D003972 1.7e-06 56.6 80 40.0
SalBow5G4733 Salvia bowleyana HOM05D000012 ORTHO05D003972 1.7e-06 56.6 71 38.0
FvH4_6g11890 Fragaria vesca HOM05D000012 ORTHO05D003972 2.8e-06 55.8 70 40.0
Migut.J00194 Erythranthe guttata HOM05D000012 ORTHO05D003972 4.8e-06 55.1 60 41.7
FAN14G2705 Fragaria x ananassa HOM05D000012 ORTHO05D017217 8.2e-06 54.3 72 40.3


User provided reference genes

Program Settings