Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 1.0e-188 663.3 346 100.0
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 1.4e-153 546.6 356 83.4
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 1.9e-150 536.2 361 80.6
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 1.6e-146 523.1 356 78.1
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 3.1e-145 518.8 358 77.9
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 1.6e-138 496.5 356 75.3
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 3.1e-137 492.3 357 75.9
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.2e-133 480.3 341 76.2
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 4.6e-133 478.4 357 74.5
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 6.1e-133 478.0 357 74.8
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 1.8e-132 476.5 357 74.5
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 3.0e-132 475.7 361 74.0
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 3.0e-132 475.7 357 74.2
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 3.9e-132 475.3 357 73.7
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 1.7e-130 469.9 360 74.7
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 2.2e-130 469.5 357 73.9
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 1.1e-129 467.2 362 74.3
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 4.1e-129 465.3 356 73.3
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 5.3e-129 464.9 356 70.8
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 4.5e-128 461.8 368 72.6
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 4.5e-128 461.8 360 74.4
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 7.7e-128 461.1 357 70.9
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 7.7e-128 461.1 359 72.7
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 1.0e-127 460.7 368 73.1
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 1.3e-127 460.3 358 72.3
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 1.3e-127 460.3 359 72.7
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 1.7e-127 459.9 369 71.8
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 2.9e-127 459.1 380 68.9
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 5.0e-127 458.4 363 70.2
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 5.0e-127 458.4 356 69.9
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 6.5e-127 458.0 366 72.7
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 8.5e-127 457.6 361 72.9
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 1.1e-126 457.2 361 72.3
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.4e-126 456.8 366 72.4
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.4e-126 456.8 301 81.4
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 4.2e-126 455.3 358 69.3
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 2.7e-125 452.6 362 70.7
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 3.6e-125 452.2 372 71.8
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 6.1e-125 451.4 360 72.5
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 7.9e-125 451.1 368 69.3
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 7.9e-125 451.1 363 70.2
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 1.8e-124 449.9 355 69.0
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 3.0e-124 449.1 362 71.8
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 3.9e-124 448.7 360 71.9
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 3.9e-124 448.7 372 70.4
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 5.1e-124 448.4 360 71.1
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 8.8e-124 447.6 367 69.8
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 8.8e-124 447.6 313 76.7
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 2.0e-123 446.4 356 71.3
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 2.0e-123 446.4 331 73.4
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 4.4e-123 445.3 359 70.2
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 4.4e-123 445.3 362 71.3
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 4.4e-123 445.3 369 69.4
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 5.7e-123 444.9 310 77.4
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 7.4e-123 444.5 355 70.4
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 9.7e-123 444.1 334 73.1
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 9.7e-123 444.1 334 73.1
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 9.7e-123 444.1 359 70.5
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 9.7e-123 444.1 359 70.5
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 9.7e-123 444.1 359 70.5
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 1.3e-122 443.7 364 70.6
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 1.7e-122 443.4 310 76.8
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 2.2e-122 443.0 356 71.3
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 2.2e-122 443.0 370 69.5
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 3.7e-122 442.2 369 68.6
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 8.2e-122 441.0 361 68.4
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 1.1e-121 440.7 367 68.7
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 1.4e-121 440.3 353 71.7
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 3.1e-121 439.1 385 64.4
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 3.1e-121 439.1 346 70.5
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 6.9e-121 438.0 330 70.9
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 9.1e-121 437.6 317 75.7
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 9.1e-121 437.6 367 70.0
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 1.5e-120 436.8 360 69.2
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 2.0e-120 436.4 362 70.7
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 2.0e-120 436.4 358 70.9
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 2.0e-120 436.4 334 73.1
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 2.6e-120 436.0 331 71.3
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 4.5e-120 435.3 317 75.1
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 4.5e-120 435.3 327 73.4
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 1.0e-119 434.1 354 71.2
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 1.7e-119 433.3 343 71.7
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 6.5e-119 431.4 361 67.9
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 6.5e-119 431.4 363 68.3
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 8.5e-119 431.0 299 77.6
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 5.5e-118 428.3 367 67.8
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 7.2e-118 427.9 361 69.5
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 1.2e-117 427.2 294 76.5
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 4.7e-117 425.2 353 68.8
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 4.7e-117 425.2 357 66.9
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 2.3e-116 422.9 413 61.3
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 3.0e-116 422.5 335 71.0
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 5.2e-116 421.8 413 61.0
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 2.6e-115 419.5 360 67.2
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 2.6e-115 419.5 365 66.6
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 3.3e-115 419.1 260 85.4
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 4.4e-115 418.7 365 66.3
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 4.4e-115 418.7 270 81.1
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 7.4e-115 417.9 360 67.5
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 7.4e-115 417.9 335 70.4
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 9.7e-115 417.5 364 67.3
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 9.7e-115 417.5 364 67.0
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 9.7e-115 417.5 364 67.0
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 1.3e-114 417.2 363 67.5
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 1.3e-114 417.2 363 66.4
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 1.3e-114 417.2 364 67.3
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 1.7e-114 416.8 363 68.3
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 2.8e-114 416.0 364 67.3
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 3.7e-114 415.6 364 66.5
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 4.8e-114 415.2 310 75.2
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 8.2e-114 414.5 280 80.0
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 8.2e-114 414.5 292 77.4
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 8.2e-114 414.5 360 66.7
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 3.1e-113 412.5 449 57.5
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 9.1e-113 411.0 361 66.5
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 1.2e-112 410.6 361 66.2
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 4.5e-112 408.7 317 72.2
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 7.7e-112 407.9 366 67.5
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 1.9e-110 403.3 357 65.3
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 2.7e-109 399.4 385 60.8
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 3.6e-109 399.1 281 75.4
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 1.8e-108 396.7 254 83.1
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 3.0e-108 396.0 345 67.2
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 5.7e-107 391.7 301 72.8
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 8.2e-106 387.9 344 64.8
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 7.0e-105 384.8 308 67.9
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 1.7e-103 380.2 281 73.0
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 3.2e-102 375.9 225 86.7
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 5.5e-102 375.2 274 72.3
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 1.6e-101 373.6 286 69.9
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 8.0e-101 371.3 362 64.1
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 1.3e-98 364.0 262 72.9
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 1.3e-98 364.0 247 75.3
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 1.7e-98 363.6 243 76.5
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 2.4e-97 359.8 286 68.5
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 6.8e-92 341.7 283 64.0
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 1.7e-87 327.0 295 65.4
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 2.3e-87 326.6 252 67.5
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 1.5e-86 323.9 302 63.2
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 2.9e-82 309.7 273 61.5
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 1.5e-75 287.3 310 55.5
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 3.0e-63 246.5 251 57.4
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 1.9e-54 217.2 159 74.2
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 2.5e-54 216.9 148 77.7
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 2.7e-48 196.8 108 95.4
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 4.8e-45 186.0 169 61.5
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 4.8e-45 186.0 169 61.5
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 2.8e-37 160.2 102 80.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 4.8e-37 159.5 99 81.8
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 3.2e-25 120.2 118 58.5
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 4.6e-24 116.3 116 58.6
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 1.6e-21 107.8 64 90.6
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 1.6e-21 107.8 61 88.5
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 8.5e-18 95.5 102 60.8
Actinidia33630 Actinidia chinensis HOM05D004794 ORTHO05D055622 1.4e-17 94.7 89 64.0


User provided reference genes

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