Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 0.0e+00 2654.8 1341 100.0
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 0.0e+00 2644.4 1341 99.6
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 0.0e+00 1622.1 1347 66.4
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 0.0e+00 1422.1 1387 61.5
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 0.0e+00 1234.6 1368 55.1
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 2.1e-306 1056.2 1374 50.9
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 1.3e-279 967.2 1248 49.5
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 1.4e-273 947.2 1405 46.5
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 2.3e-273 946.4 1332 47.0
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 9.2e-262 907.9 1388 45.2
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 1.7e-260 903.7 1373 44.7
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 4.3e-259 899.0 1288 45.9
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 4.3e-259 899.0 1401 46.0
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 4.7e-258 895.6 1302 46.6
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 6.8e-257 891.7 1335 44.6
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 3.3e-251 872.8 1321 44.7
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 3.3e-251 872.8 1387 44.2
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 1.5e-248 864.0 1397 42.4
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 1.1e-243 847.8 1403 43.1
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 3.9e-236 822.8 1380 43.5
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 2.5e-235 820.1 1331 43.1
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 1.4e-233 814.3 1415 41.8
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 3.1e-233 813.1 1379 43.4
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 1.1e-230 804.7 1364 42.6
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 1.9e-230 803.9 1448 41.9
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 2.1e-229 800.4 1435 42.8
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 2.1e-229 800.4 1384 43.1
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 6.0e-229 798.9 1321 43.0
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 7.9e-229 798.5 1448 41.6
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 1.7e-228 797.3 1341 43.5
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 3.0e-228 796.6 1340 43.3
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 3.3e-227 793.1 1435 42.6
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 6.9e-225 785.4 1380 42.5
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 3.8e-223 779.6 1332 42.5
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 1.0e-220 771.5 1446 41.8
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 1.8e-220 770.8 1341 42.6
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 1.6e-218 764.2 1374 41.0
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 4.0e-217 759.6 1485 38.9
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 4.2e-214 749.6 1343 41.2
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 7.1e-214 748.8 1379 41.3
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 7.4e-211 738.8 1355 41.6
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 9.6e-211 738.4 1380 41.2
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 4.8e-210 736.1 1340 40.7
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 6.2e-210 735.7 1381 41.1
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 3.1e-209 733.4 1381 41.1
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 6.9e-209 732.3 1373 39.7
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.5e-208 731.1 1378 41.2
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 1.2e-205 721.5 1440 40.5
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 1.6e-205 721.1 1442 40.0
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 3.5e-205 719.9 1390 39.0
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 2.4e-201 707.2 1378 40.9
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 6.9e-201 705.7 1442 41.0
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 4.6e-197 693.0 1391 39.6
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 2.5e-190 670.6 957 48.9
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 2.7e-189 667.2 1454 38.7
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 6.1e-189 666.0 1313 39.4
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 1.2e-184 651.7 1375 38.5
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 8.5e-183 645.6 1452 36.8
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 8.0e-181 639.0 1372 38.3
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 1.8e-180 637.9 1388 37.5
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 5.3e-177 626.3 1372 36.7
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 1.2e-176 625.2 1404 37.3
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 1.6e-176 624.8 1138 43.4
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 1.8e-148 531.6 1453 33.9
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 1.8e-148 531.6 576 53.1
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 1.4e-145 521.9 1379 35.0
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 2.5e-142 511.1 1406 33.7
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.1e-136 491.5 1150 36.3
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.3e-135 488.8 953 39.0
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 1.2e-133 482.3 1296 33.3
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 1.1e-132 479.2 1431 32.6
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 2.4e-121 441.4 1261 34.5
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 2.4e-116 424.9 1534 31.6
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 4.6e-112 410.6 1128 34.9
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 1.8e-108 398.7 1463 30.1
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 9.3e-105 386.3 291 65.6
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 3.8e-98 364.4 968 35.6
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 5.5e-97 360.5 1088 33.1
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 7.9e-88 330.1 907 34.7
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 1.1e-86 326.2 902 32.8
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 6.1e-80 303.9 1227 29.5
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 7.9e-80 303.5 679 37.0
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 3.3e-78 298.1 684 36.7
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 4.4e-78 297.7 1387 29.0
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.5e-75 289.3 830 32.0
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 1.8e-71 275.8 1386 29.0
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 2.3e-71 275.4 784 33.4
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 2.3e-71 275.4 682 36.1
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.0e-63 250.0 647 34.3
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.8e-63 249.2 318 45.6
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 9.7e-62 243.4 1194 27.4
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 1.3e-61 243.0 404 39.9
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 1.8e-60 239.2 1176 27.7
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 1.6e-59 236.1 1385 27.3
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 4.2e-57 228.0 1131 27.9
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 1.6e-56 226.1 1491 27.0
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 5.2e-55 221.1 1382 26.8
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.0e-54 219.2 1088 27.0
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 6.3e-53 214.2 1394 27.1
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 7.0e-52 210.7 339 45.1
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 1.2e-48 199.9 367 39.8
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 1.4e-47 196.4 391 40.4
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 3.1e-44 185.3 1499 24.7
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 4.5e-43 181.4 482 33.6
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 5.9e-43 181.0 585 32.1
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 1.1e-41 176.8 487 32.9
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 8.0e-40 170.6 677 30.7
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 1.8e-39 169.5 1090 26.7
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 8.3e-37 160.6 875 27.0
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 1.8e-36 159.5 370 35.7
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.0e-34 153.7 223 45.7
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 1.7e-34 152.9 1092 25.2
PGSC0003DMG400011471 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.7e-34 152.9 423 33.3
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 3.3e-33 148.7 1340 24.8
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 2.1e-32 146.0 1349 25.2
SGA_v2.0_scaffold44G16697 Striga asiatica HOM05D000283 ORTHO05D006673 3.1e-31 142.1 451 31.7
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 4.0e-31 141.7 1353 24.3
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 4.0e-31 141.7 478 31.8
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 9.8e-30 137.1 783 29.4
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 4.9e-29 134.8 1507 24.8
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 6.0e-27 127.9 192 44.8
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 1.3e-26 126.7 509 30.3
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 3.9e-26 125.2 796 28.3
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 1.2e-24 120.2 728 27.9
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 2.1e-24 119.4 757 28.0
A10p24680 Brassica napus HOM05D010678 ORTHO05D006673 8.1e-24 117.5 597 29.1
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 3.4e-22 112.1 1407 24.3
PGSC0003DMG400011488 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.4e-22 112.1 630 25.4
CAN.G786.35 Capsicum annuum HOM05D000283 ORTHO05D006673 1.9e-20 106.3 142 42.3
BraA10t44531Z Brassica rapa HOM05D010678 ORTHO05D006673 3.5e-19 102.1 597 28.0
PGSC0003DMG400039757 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.5e-17 96.7 165 38.2
Solyc04g010130.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 2.8e-16 92.4 89 49.4
Sopen04g005300 Solanum pennellii HOM05D000283 ORTHO05D006673 9.9e-14 84.0 123 42.3
BcaNung06336 Brassica carinata HOM05D010678 ORTHO05D006673 4.9e-13 81.6 544 25.2
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 6.4e-13 81.3 1446 24.1
Oeu025164.1 Olea europaea HOM05D000283 ORTHO05D010811 3.2e-12 79.0 369 29.0
Actinidia28362 Actinidia chinensis HOM05D006627 ORTHO05D007753 9.2e-12 77.4 389 27.5
Solyc04g010180.4 Solanum lycopersicum HOM05D000283 ORTHO05D006673 3.9e-10 72.0 161 36.6
PGSC0003DMG400011484 Solanum tuberosum HOM05D000283 ORTHO05D006673 8.6e-10 70.9 172 33.7
CsaV3_5G026070 Cucumis sativus L. HOM05D000283 ORTHO05D006673 2.5e-09 69.3 276 30.8
COL.COLO4_31476 Corchorus olitorius HOM05D000283 ORTHO05D006673 3.3e-09 68.9 46 73.9
Sopen04g005350 Solanum pennellii HOM05D000283 ORTHO05D006673 4.3e-09 68.6 299 31.8
Os08g0430000 Oryza sativa ssp. japonica HOM05D006627 ORTHO05D007753 5.6e-09 68.2 457 26.7
SGA_v2.0_scaffold44G16695 Striga asiatica HOM05D000283 ORTHO05D006673 1.6e-08 66.6 724 25.0
COL.COLO4_10625 Corchorus olitorius HOM05D000283 ORTHO05D006673 4.7e-08 65.1 43 72.1
COL.COLO4_26050 Corchorus olitorius HOM05D000283 ORTHO05D006673 4.7e-08 65.1 43 72.1
HPP92_028524 Vanilla planifolia HOM05D061474 ORTHO05D007753 1.1e-07 63.9 345 26.1
Oeu025165.1 Olea europaea HOM05D008194 ORTHO05D010811 1.4e-07 63.5 226 32.3
Psat3g141280 Pisum sativum HOM05D000846 ORTHO05D001340 2.4e-07 62.8 179 35.8
Sopen04g005280 Solanum pennellii HOM05D000283 ORTHO05D006673 3.1e-07 62.4 91 45.1
QL12p032277 Quercus lobata HOM05D006627 ORTHO05D007753 4.0e-07 62.0 1473 23.1
Sc22g0005410 Simmondsia chinensis HOM05D006627 ORTHO05D007753 4.0e-07 62.0 407 28.5
HPP92_025630 Vanilla planifolia HOM05D006627 ORTHO05D007753 9.0e-07 60.8 318 29.2
HPP92_028535 Vanilla planifolia HOM05D061474 ORTHO05D007753 9.0e-07 60.8 316 25.9
EL10Ac5g12810 Beta vulgaris HOM05D006627 ORTHO05D007753 1.2e-06 60.5 496 27.2
AUR62010719 Chenopodium quinoa HOM05D006627 ORTHO05D007753 1.5e-06 60.1 1412 24.0
Psat3g141160 Pisum sativum HOM05D000846 ORTHO05D001340 5.8e-06 58.2 160 35.6
DCAR_020266 Daucus carota HOM05D006627 ORTHO05D007753 9.9e-06 57.4 411 29.7


User provided reference genes

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