Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006510 Camellia sinensis var. sinensis HOM05D007178 ORTHO05D009022 1.8e-40 169.1 104 100.0
Dinv21533 Davidia involucrata HOM05D007178 ORTHO05D009022 5.1e-27 124.4 72 87.5
GSVIVG01021533001 Vitis vinifera HOM05D007178 ORTHO05D009022 6.7e-27 124.0 72 88.9
Dinv32223 Davidia involucrata HOM05D007178 ORTHO05D009022 8.2e-25 117.1 78 80.8
TAR460G0007 Trochodendron aralioides HOM05D007178 ORTHO05D009022 1.1e-24 116.7 72 86.1
Atru.chr10.1132 Acer truncatum HOM05D007178 ORTHO05D009022 1.5e-23 112.8 71 77.5
Thecc.06G146700 Theobroma cacao HOM05D007178 ORTHO05D009022 2.0e-23 112.5 71 80.3
CiPaw.09G121000 Carya illinoinensis HOM05D007178 ORTHO05D009022 2.6e-23 112.1 71 81.7
Cc00_g05770 Coffea canephora HOM05D007178 ORTHO05D009022 2.6e-23 112.1 72 80.6
CANSAT35G0370 Cannabis sativa HOM05D007178 ORTHO05D009022 3.4e-23 111.7 70 80.0
Manes.17G073200 Manihot esculenta HOM05D007178 ORTHO05D009022 4.5e-23 111.3 71 78.9
Duzib235G1408 Durio zibethinus HOM05D007178 ORTHO05D009022 5.8e-23 110.9 71 77.5
vmacro03352 Vaccinium macrocarpon HOM05D007178 ORTHO05D009022 7.6e-23 110.5 72 80.6
Glyma.07G128900 Glycine max HOM05D007178 ORTHO05D009022 1.3e-22 109.8 70 80.0
Hund17773 Selenicereus undatus HOM05D007178 ORTHO05D009022 1.3e-22 109.8 74 70.3
Cfa000915 Carpinus fangiana HOM05D007178 ORTHO05D009022 1.7e-22 109.4 71 78.9
Lsat_1_v5_gn_4_29580 Lactuca sativa HOM05D007178 ORTHO05D009022 1.7e-22 109.4 72 79.2
TWI09G0402 Tripterygium wilfordii HOM05D007178 ORTHO05D009022 1.7e-22 109.4 71 77.5
MELO3C007115.2 Cucumis melo HOM05D007178 ORTHO05D009022 2.2e-22 109.0 72 76.4
DCAR_027898 Daucus carota HOM05D007178 ORTHO05D009022 2.2e-22 109.0 72 79.2
Ciclev10017932m.g Citrus clementina HOM05D007178 ORTHO05D009022 2.9e-22 108.6 71 77.5
QL05p055487 Quercus lobata HOM05D007178 ORTHO05D009022 2.9e-22 108.6 71 76.1
CiPaw.10G089700 Carya illinoinensis HOM05D007178 ORTHO05D009022 3.8e-22 108.2 71 76.1
Glyma.01G003100 Glycine max HOM05D007178 ORTHO05D009022 3.8e-22 108.2 70 77.1
Nitab4.5_0000315g0010 Nicotiana tabacum HOM05D007178 ORTHO05D009022 6.5e-22 107.5 71 77.5
Duzib160G0207 Durio zibethinus HOM05D007178 ORTHO05D009022 8.4e-22 107.1 71 74.6
Nitab4.5_0005655g0060 Nicotiana tabacum HOM05D007178 ORTHO05D009022 8.4e-22 107.1 71 77.5
Prupe.4G084100 Prunus persica HOM05D007178 ORTHO05D009022 8.4e-22 107.1 71 77.5
TWI73G0655 Tripterygium wilfordii HOM05D007178 ORTHO05D009022 8.4e-22 107.1 70 74.3
CsaV3_6G051920 Cucumis sativus L. HOM05D007178 ORTHO05D009022 1.1e-21 106.7 72 75.0
ECA234G3634 Erigeron canadensis HOM05D007178 ORTHO05D009022 1.4e-21 106.3 72 77.8
Phvul.004G171100 Phaseolus vulgaris HOM05D007178 ORTHO05D009022 1.4e-21 106.3 70 77.1
MBI18_g11238_MAGBIO Magnolia biondii HOM05D007178 ORTHO05D009022 2.5e-21 105.5 72 73.6
ClCG01G024800 Citrullus lanatus HOM05D007178 ORTHO05D009022 3.2e-21 105.1 71 73.2
PSO541G3638 Papaver somniferum HOM05D007178 ORTHO05D009022 3.2e-21 105.1 72 76.4
PSO675G4358 Papaver somniferum HOM05D007178 ORTHO05D009022 3.2e-21 105.1 72 76.4
Gohir.A10G042700 Gossypium hirsutum HOM05D007178 ORTHO05D009022 4.2e-21 104.8 71 76.1
Gohir.D10G043700 Gossypium hirsutum HOM05D007178 ORTHO05D009022 4.2e-21 104.8 71 76.1
Gorai.011G046500 Gossypium raimondii HOM05D007178 ORTHO05D009022 4.2e-21 104.8 71 76.1
Lj2g0013550 Lotus japonicus HOM05D007178 ORTHO05D009022 4.2e-21 104.8 71 73.2
Nn3g20425 Nelumbo nucifera HOM05D007178 ORTHO05D009022 4.2e-21 104.8 73 76.7
Cpa.g.sc17.33 Carica papaya HOM05D007178 ORTHO05D009022 5.5e-21 104.4 71 76.1
unitig_26.g9766 Utricularia gibba HOM05D007178 ORTHO05D009022 5.5e-21 104.4 71 77.5
Aqoxy4G00077 Aquilegia oxysepala HOM05D007178 ORTHO05D009022 9.3e-21 103.6 72 76.4
Sed0021444 Sechium edule HOM05D007178 ORTHO05D009022 9.3e-21 103.6 71 71.8
Solyc08g022120.3 Solanum lycopersicum HOM05D007178 ORTHO05D009022 1.2e-20 103.2 71 74.6
Sopen08g007660 Solanum pennellii HOM05D007178 ORTHO05D009022 1.2e-20 103.2 71 74.6
MD05G1280800 Malus domestica HOM05D007178 ORTHO05D009022 1.6e-20 102.8 70 75.7
RcHm_v2.0_Chr5g0014561 Rosa chinensis HOM05D007178 ORTHO05D009022 2.7e-20 102.1 71 73.2
Gohir.A06G196500 Gossypium hirsutum HOM05D007178 ORTHO05D009022 3.5e-20 101.7 71 73.2
Gohir.D06G204000 Gossypium hirsutum HOM05D007178 ORTHO05D009022 3.5e-20 101.7 71 73.2
Gorai.010G238000 Gossypium raimondii HOM05D007178 ORTHO05D009022 3.5e-20 101.7 71 73.2
MD10G1259200 Malus domestica HOM05D007178 ORTHO05D009022 3.5e-20 101.7 69 75.4
Sc05g0006030 Simmondsia chinensis HOM05D007178 ORTHO05D009022 4.6e-20 101.3 72 73.6
FvH4_3g05190 Fragaria vesca HOM05D007178 ORTHO05D009022 7.9e-20 100.5 71 71.8
FAN16G3072 Fragaria x ananassa HOM05D007178 ORTHO05D009022 7.9e-20 100.5 71 71.8
FAN21G4020 Fragaria x ananassa HOM05D007178 ORTHO05D009022 7.9e-20 100.5 71 71.8
FAN25G1793 Fragaria x ananassa HOM05D007178 ORTHO05D009022 1.0e-19 100.1 71 71.8
TPR.G35503 Trifolium pratense HOM05D007178 ORTHO05D009022 1.8e-19 99.4 70 71.4
Ah.14g086320 Amaranthus hybridus HOM05D007178 ORTHO05D009022 3.0e-19 98.6 71 73.2
THA.LOC104798400 Tarenaya hassleriana HOM05D007178 ORTHO05D009022 8.7e-19 97.1 72 70.8
Psat1g049440 Pisum sativum HOM05D007178 ORTHO05D009022 1.1e-18 96.7 70 70.0
COL.COLO4_31031 Corchorus olitorius HOM05D007178 ORTHO05D009022 1.5e-18 96.3 66 74.2
PGR083G2020 Punica granatum HOM05D007178 ORTHO05D009022 2.5e-18 95.5 71 69.0
arahy.Tifrunner.gnm1.ann1.KYL6KL Arachis hypogaea HOM05D007178 ORTHO05D009022 3.3e-18 95.1 71 69.0
Peaxi162Scf00045g02430 Petunia axillaris HOM05D007178 ORTHO05D009022 3.3e-18 95.1 67 74.6
EL10Ac8g19636 Beta vulgaris HOM05D007178 ORTHO05D009022 4.3e-18 94.7 93 54.8
Potri.004G133260 Populus trichocarpa HOM05D007178 ORTHO05D009022 4.3e-18 94.7 71 67.6
Lalb_Chr22g0349731 Lupinus albus HOM05D007178 ORTHO05D009022 1.3e-17 93.2 71 69.0
Migut.M00887 Erythranthe guttata HOM05D007178 ORTHO05D009022 2.2e-17 92.4 73 69.9
vmacro05543 Vaccinium macrocarpon HOM05D007178 ORTHO05D009022 4.8e-17 91.3 78 64.1
CARHR225220 Cardamine hirsuta HOM05D007178 ORTHO05D009022 6.3e-17 90.9 72 68.1
Thhalv10026632m.g Eutrema salsugineum HOM05D007178 ORTHO05D009022 6.3e-17 90.9 71 69.0
Lalb_Chr14g0375331 Lupinus albus HOM05D007178 ORTHO05D009022 1.4e-16 89.7 70 67.1
Sp7g15630 Schrenkiella parvula HOM05D007178 ORTHO05D009022 1.8e-16 89.4 72 68.1
HPP92_014792 Vanilla planifolia HOM05D007178 ORTHO05D009022 1.8e-16 89.4 71 63.4
AL7G35950 Arabidopsis lyrata HOM05D007178 ORTHO05D009022 2.4e-16 89.0 72 69.4
CDE11G0374 Ceratophyllum demersum HOM05D007178 ORTHO05D009022 4.1e-16 88.2 71 57.7
FAN11G0307 Fragaria x ananassa HOM05D007178 ORTHO05D009022 5.3e-16 87.8 66 68.2
A03p51260 Brassica napus HOM05D007178 ORTHO05D009022 6.9e-16 87.4 72 66.7
BraA03t14208Z Brassica rapa HOM05D007178 ORTHO05D009022 6.9e-16 87.4 72 66.7
Actinidia13672 Actinidia chinensis HOM05D007178 ORTHO05D009022 2.0e-15 85.9 44 95.5
AT4G18400 Arabidopsis thaliana HOM05D007178 ORTHO05D009022 2.0e-15 85.9 71 67.6
BcaNung00005 Brassica carinata HOM05D007178 ORTHO05D009022 2.0e-15 85.9 71 66.2
VMungo0464G0906 Vigna mungo HOM05D007178 ORTHO05D009022 3.4e-15 85.1 43 90.7
arahy.Tifrunner.gnm1.ann1.WWKL6Q Arachis hypogaea HOM05D007178 ORTHO05D009022 4.5e-15 84.7 42 90.5
A01p10340 Brassica napus HOM05D007178 ORTHO05D009022 4.5e-15 84.7 71 64.8
BolC1t01205H Brassica oleracea HOM05D007178 ORTHO05D009022 4.5e-15 84.7 71 64.8
Carub.0007s2286 Capsella rubella HOM05D007178 ORTHO05D009022 7.7e-15 84.0 72 65.3
BcaC09g51519 Brassica carinata HOM05D007178 ORTHO05D009022 1.0e-14 83.6 71 63.4
C01p12290 Brassica napus HOM05D007178 ORTHO05D009022 1.0e-14 83.6 71 63.4
BraA01t00981Z Brassica rapa HOM05D007178 ORTHO05D009022 1.0e-14 83.6 71 64.8
SGA_v2.0_scaffold1G00199 Striga asiatica HOM05D007178 ORTHO05D009022 1.7e-14 82.8 64 65.6
BcaC06g30589 Brassica carinata HOM05D007178 ORTHO05D009022 2.9e-14 82.0 73 64.4
HanXRQChr07g0199391 Helianthus annuus HOM05D007178 ORTHO05D009022 5.0e-14 81.3 44 88.6
Zm00001eb307790 Zea mays HOM05D007178 ORTHO05D009022 5.0e-14 81.3 71 57.7
CDE05G0627 Ceratophyllum demersum HOM05D007178 ORTHO05D009022 1.4e-13 79.7 72 54.2
Medtr8g006645 Medicago truncatula HOM05D007178 ORTHO05D009022 2.5e-13 79.0 43 83.7
Os09g0569450 Oryza sativa ssp. japonica HOM05D007178 ORTHO05D009022 1.2e-12 76.6 71 57.7
FvH4_7g10051 Fragaria vesca HOM05D007178 ORTHO05D009022 2.1e-12 75.9 45 75.6
Actinidia33661 Actinidia chinensis HOM05D007178 ORTHO05D009022 4.6e-12 74.7 72 63.9
ATR1098G109 Amborella trichopoda HOM05D007178 ORTHO05D009022 1.0e-11 73.6 44 77.3
Ah.13g071740 Amaranthus hybridus HOM05D007178 ORTHO05D009022 5.1e-11 71.2 45 80.0
FvH4_6g47640 Fragaria vesca HOM05D007178 ORTHO05D009022 8.8e-11 70.5 44 72.7
Aa31LG6G1110 Aethionema arabicum HOM05D007178 ORTHO05D009022 2.5e-10 68.9 66 59.1
FAN14G2280 Fragaria x ananassa HOM05D007178 ORTHO05D009022 4.3e-10 68.2 42 73.8
FvH4_3g19851 Fragaria vesca HOM05D007178 ORTHO05D009022 9.7e-10 67.0 40 75.0
SEGI_20805 Sequoiadendron giganteum HOM05D019012 ORTHO05D020434 4.1e-08 61.6 43 60.5
Gohir.D07G160820 Gossypium hirsutum HOM05D007178 ORTHO05D009022 1.0e-06 57.0 32 81.2
FAN12G1070 Fragaria x ananassa HOM05D007178 ORTHO05D009022 2.9e-06 55.5 30 80.0


User provided reference genes

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