Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006494 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1817.4 929 100.0
CSS0034103 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1779.6 965 95.1
CSS0002264 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1766.1 929 97.5
Actinidia06806 Actinidia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1400.2 964 76.0
TAR626G1158 Trochodendron aralioides HOM05D007170 ORTHO05D009243 0.0e+00 1228.8 967 66.3
GSVIVG01020797001 Vitis vinifera HOM05D007170 ORTHO05D009243 0.0e+00 1158.7 967 63.4
MD09G1135500 Malus domestica HOM05D007170 ORTHO05D009243 0.0e+00 1154.4 967 63.5
Prupe.3G191100 Prunus persica HOM05D007170 ORTHO05D009243 0.0e+00 1153.7 967 63.0
Cfa020492 Carpinus fangiana HOM05D007170 ORTHO05D009243 0.0e+00 1144.4 967 63.9
RcHm_v2.0_Chr2g0154431 Rosa chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1142.5 967 62.8
Nn3g20634 Nelumbo nucifera HOM05D007170 ORTHO05D009243 0.0e+00 1128.2 967 63.2
FvH4_6g39900 Fragaria vesca HOM05D007170 ORTHO05D009243 0.0e+00 1122.8 967 61.6
Haze_09546 Corylus avellana HOM05D007170 ORTHO05D009243 0.0e+00 1120.9 1012 61.0
Atru.chr8.950 Acer truncatum HOM05D007170 ORTHO05D009243 0.0e+00 1112.1 968 62.5
Ciclev10010909m.g Citrus clementina HOM05D007170 ORTHO05D009243 0.0e+00 1104.7 967 62.4
Sabra06G0017000 Salix brachista HOM05D007170 ORTHO05D009243 0.0e+00 1104.7 968 62.0
FAN02G4004 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1101.7 970 61.3
Potri.006G023500 Populus trichocarpa HOM05D007170 ORTHO05D009243 0.0e+00 1099.3 968 61.7
FAN14G4936 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1089.3 985 60.1
CANSAT64G1590 Cannabis sativa HOM05D007170 ORTHO05D009243 0.0e+00 1083.2 968 61.1
Duzib138G0290 Durio zibethinus HOM05D007170 ORTHO05D009243 0.0e+00 1081.6 967 60.8
Lj7A482G28 Lonicera japonica HOM05D007170 ORTHO05D009243 1.8e-309 1065.8 958 61.3
CiPaw.03G198500 Carya illinoinensis HOM05D007170 ORTHO05D009243 6.9e-309 1063.9 966 61.0
Thecc.01G177100 Theobroma cacao HOM05D007170 ORTHO05D009243 1.3e-307 1059.7 967 59.8
MBI02_g15149_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 1.7e-307 1059.3 1025 56.9
Aqoxy3G00362 Aquilegia oxysepala HOM05D007170 ORTHO05D009243 3.9e-304 1048.1 969 59.6
DCAR_006644 Daucus carota HOM05D007170 ORTHO05D009243 2.0e-300 1035.8 970 58.0
Oeu038464.1 Olea europaea HOM05D007170 ORTHO05D009243 8.0e-297 1023.8 1027 55.8
Nitab4.5_0002247g0080 Nicotiana tabacum HOM05D007170 ORTHO05D009243 1.4e-293 1013.1 999 56.8
Manes.09G075018 Manihot esculenta HOM05D007170 ORTHO05D009243 1.8e-293 1012.7 981 56.4
Sc07g0002130 Simmondsia chinensis HOM05D007170 ORTHO05D009243 5.3e-293 1011.1 967 57.1
Gohir.D07G192100 Gossypium hirsutum HOM05D007170 ORTHO05D009243 2.6e-292 1008.8 970 57.6
Cc02_g31000 Coffea canephora HOM05D007170 ORTHO05D009243 3.5e-292 1008.4 967 57.3
Gorai.001G214900 Gossypium raimondii HOM05D007170 ORTHO05D009243 7.2e-290 1000.7 970 57.6
Peaxi162Scf00647g00012 Petunia axillaris HOM05D007170 ORTHO05D009243 6.1e-289 997.7 1010 56.1
PSO541G2476 Papaver somniferum HOM05D007170 ORTHO05D009243 1.2e-284 983.4 968 55.8
PSO675G2674 Papaver somniferum HOM05D007170 ORTHO05D009243 2.2e-283 979.2 973 55.7
HanXRQChr10g0314771 Helianthus annuus HOM05D007170 ORTHO05D009243 1.5e-282 976.5 971 56.2
Sopen01g040790 Solanum pennellii HOM05D007170 ORTHO05D009243 2.5e-282 975.7 967 55.8
Solyc01g097110.2 Solanum lycopersicum HOM05D007170 ORTHO05D009243 9.4e-282 973.8 968 56.0
Nitab4.5_0005905g0020 Nicotiana tabacum HOM05D007170 ORTHO05D009243 1.8e-277 959.5 995 54.9
Eucgr.A00891 Eucalyptus grandis HOM05D007170 ORTHO05D009243 9.1e-277 957.2 967 55.2
PGR031G3275 Punica granatum HOM05D007170 ORTHO05D009243 4.0e-272 941.8 968 55.2
SGA_v2.0_scaffold172G38980 Striga asiatica HOM05D007170 ORTHO05D009243 1.1e-269 933.7 970 53.5
Lsat_1_v5_gn_2_66140 Lactuca sativa HOM05D007170 ORTHO05D009243 4.1e-269 931.8 974 54.6
ATR1098G002 Amborella trichopoda HOM05D007170 ORTHO05D009243 3.0e-267 925.6 975 52.6
SalBow8G4071 Salvia bowleyana HOM05D007170 ORTHO05D009243 5.8e-263 911.4 1016 51.4
BcaB04g18275 Brassica carinata HOM05D007170 ORTHO05D009243 3.2e-261 905.6 969 53.4
AL7G40850 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 3.3e-258 895.6 975 53.3
A08p11580 Brassica napus HOM05D007170 ORTHO05D009243 3.6e-257 892.1 971 53.1
BcaC07g37864 Brassica carinata HOM05D007170 ORTHO05D009243 6.2e-257 891.3 969 52.9
AT4G14970 Arabidopsis thaliana HOM05D007170 ORTHO05D009243 1.8e-256 889.8 970 53.1
BraA08t33150Z Brassica rapa HOM05D007170 ORTHO05D009243 1.8e-256 889.8 971 53.2
Thhalv10024215m.g Eutrema salsugineum HOM05D007170 ORTHO05D009243 2.3e-256 889.4 974 52.5
Migut.B01114 Erythranthe guttata HOM05D007170 ORTHO05D009243 3.7e-254 882.1 955 52.1
BolC8t48255H Brassica oleracea HOM05D007170 ORTHO05D009243 6.4e-254 881.3 985 52.1
ECA238G4341 Erigeron canadensis HOM05D007170 ORTHO05D009243 3.2e-253 879.0 971 53.6
Zm00001eb117500 Zea mays HOM05D007170 ORTHO05D009243 1.4e-237 827.0 973 48.9
Dinv20277 Davidia involucrata HOM05D007170 ORTHO05D009243 2.8e-217 759.6 498 79.7
SEGI_23823 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 2.0e-215 753.4 986 44.8
Os07g0154400 Oryza sativa ssp. japonica HOM05D007170 ORTHO05D009243 1.9e-205 720.3 823 50.8
Cpa.g.sc8.299 Carica papaya HOM05D007170 ORTHO05D009243 4.1e-200 702.6 956 46.8
Gohir.A07G185500 Gossypium hirsutum HOM05D007170 ORTHO05D009243 2.3e-179 633.6 683 53.4
Mapoly0001s0378 Marchantia polymorpha HOM05D007170 ORTHO05D009243 1.4e-163 581.3 999 37.0
Pp3c3_20180 Physcomitrium patens HOM05D007170 ORTHO05D009243 1.4e-155 554.7 990 35.4
Hma1.2p1_0892F.1_g233440 Hydrangea macrophylla HOM05D007170 ORTHO05D009243 1.1e-139 501.9 313 82.7
Dinv20276 Davidia involucrata HOM05D007170 ORTHO05D009243 1.3e-137 495.0 390 70.3
AagrBONN_evm.TU.Sc2ySwM_344.1322 Anthoceros agrestis HOM05D007170 ORTHO05D009243 1.7e-134 484.6 963 33.6
HPP92_019550 Vanilla planifolia HOM05D007170 ORTHO05D009243 6.2e-132 476.1 438 57.1
CAN.G134.71 Capsicum annuum HOM05D007170 ORTHO05D009243 1.4e-112 411.8 304 69.7
CBR_g3147 Chara braunii HOM05D007170 ORTHO05D009243 3.1e-107 394.0 725 34.2
CAN.G134.69 Capsicum annuum HOM05D007170 ORTHO05D009243 3.6e-87 327.4 510 43.1
HPP92_019551 Vanilla planifolia HOM05D007170 ORTHO05D009243 1.1e-85 322.4 503 39.8
CARHR221630 Cardamine hirsuta HOM05D007170 ORTHO05D009243 7.4e-85 319.7 255 64.3
CARHR221660 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.7e-52 212.2 276 46.7
QL08p022040 Quercus lobata HOM05D007170 ORTHO05D009243 9.8e-45 186.4 205 52.7
CARHR221640 Cardamine hirsuta HOM05D007170 ORTHO05D009243 5.0e-41 174.1 143 62.2
Cpa.g.sc8.300 Carica papaya HOM05D007170 ORTHO05D009243 2.5e-40 171.8 138 65.9
Zm00001eb046090 Zea mays HOM05D007170 ORTHO05D009243 4.0e-38 164.5 195 44.1
QL02p039588 Quercus lobata HOM05D007170 ORTHO05D009243 4.9e-20 104.4 136 47.8
COL.COLO4_06564 Corchorus olitorius HOM05D007170 ORTHO05D009243 4.6e-18 97.8 134 48.5
Carub.0007s2712 Capsella rubella HOM05D007170 ORTHO05D009243 3.0e-17 95.1 69 68.1
Dinv20273 Davidia involucrata HOM05D007170 ORTHO05D009243 3.9e-17 94.7 225 32.9
CDE07G1841 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 5.1e-17 94.4 100 50.0
Zm00001eb008220 Zea mays HOM05D007170 ORTHO05D009243 1.4e-14 86.3 120 37.5
CDE07G1176 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 7.8e-10 70.5 70 52.9
CARHR221650 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.0e-09 70.1 168 35.1
Zm00001eb019760 Zea mays HOM05D007170 ORTHO05D009243 1.6e-07 62.8 85 38.8


User provided reference genes

Program Settings