Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006486 Camellia sinensis var. sinensis HOM05D005827 ORTHO05D005864 1.0e-79 300.1 160 100.0
Rhsim11G0160600 Rhododendron simsii HOM05D005827 ORTHO05D005864 3.5e-59 231.9 158 81.0
Dinv15756 Davidia involucrata HOM05D005827 ORTHO05D005864 2.5e-57 225.7 160 78.1
vmacro14445 Vaccinium macrocarpon HOM05D005827 ORTHO05D005864 9.9e-54 213.8 158 75.9
Hma1.2p1_0796F.1_g219120 Hydrangea macrophylla HOM05D005827 ORTHO05D005864 1.7e-53 213.0 161 74.5
Sopen12g028550 Solanum pennellii HOM05D005827 ORTHO05D005864 3.6e-48 195.3 161 68.9
Nitab4.5_0000209g0220 Nicotiana tabacum HOM05D005827 ORTHO05D005864 4.7e-48 194.9 160 66.9
Solyc12g056030.2 Solanum lycopersicum HOM05D005827 ORTHO05D005864 4.7e-48 194.9 161 68.9
PGSC0003DMG400005012 Solanum tuberosum HOM05D005827 ORTHO05D005864 1.4e-47 193.4 160 67.5
Peaxi162Scf00880g00322 Petunia axillaris HOM05D005827 ORTHO05D005864 3.1e-47 192.2 160 66.2
Prupe.1G568500 Prunus persica HOM05D005827 ORTHO05D005864 3.1e-47 192.2 160 68.1
Nitab4.5_0011210g0030 Nicotiana tabacum HOM05D000771 ORTHO05D005864 5.2e-47 191.4 159 65.4
Duzib132G0170 Durio zibethinus HOM05D005827 ORTHO05D005864 2.0e-46 189.5 161 67.7
CiPaw.06G170100 Carya illinoinensis HOM05D005827 ORTHO05D005864 1.9e-44 183.0 160 65.6
CAN.G517.16 Capsicum annuum HOM05D005827 ORTHO05D005864 5.4e-44 181.4 152 65.1
MD15G1423200 Malus domestica HOM05D005827 ORTHO05D005864 5.4e-44 181.4 160 64.4
Lj9A321T79 Lonicera japonica HOM05D005827 ORTHO05D005864 9.2e-44 180.6 200 57.5
DCAR_029081 Daucus carota HOM05D005827 ORTHO05D005864 2.1e-43 179.5 164 62.8
Cc02_g19170 Coffea canephora HOM05D005827 ORTHO05D005864 7.8e-43 177.6 161 65.2
Eucgr.G01363 Eucalyptus grandis HOM05D005827 ORTHO05D005864 7.8e-43 177.6 160 61.9
Thecc.02G106700 Theobroma cacao HOM05D005827 ORTHO05D005864 1.0e-42 177.2 143 67.8
QL11p034047 Quercus lobata HOM05D005827 ORTHO05D005864 2.3e-42 176.0 159 64.8
HanXRQChr16g0514881 Helianthus annuus HOM05D005827 ORTHO05D005864 3.0e-42 175.6 158 60.1
Potri.009G097000 Populus trichocarpa HOM05D005827 ORTHO05D005864 3.0e-42 175.6 161 63.4
ECA234G2840 Erigeron canadensis HOM05D005827 ORTHO05D005864 3.9e-42 175.3 132 69.7
Manes.10G074300 Manihot esculenta HOM05D005827 ORTHO05D005864 3.9e-42 175.3 162 64.8
Nitab4.5_0001647g0080 Nicotiana tabacum HOM05D005827 ORTHO05D005864 1.1e-41 173.7 145 64.8
Atru.chr5.2579 Acer truncatum HOM05D005827 ORTHO05D005864 1.9e-41 172.9 161 61.5
MSTRG.27741 Avicennia marina HOM05D005827 ORTHO05D005864 3.3e-41 172.2 159 62.3
CANSAT11G0172 Cannabis sativa HOM05D005827 ORTHO05D005864 5.6e-41 171.4 160 60.0
Gohir.A03G186800 Gossypium hirsutum HOM05D005827 ORTHO05D005864 5.6e-41 171.4 130 70.0
Gorai.005G235500 Gossypium raimondii HOM05D005827 ORTHO05D005864 9.6e-41 170.6 130 70.0
Lsat_1_v5_gn_5_114720 Lactuca sativa HOM05D005827 ORTHO05D005864 1.2e-40 170.2 142 68.3
Nn1g04717 Nelumbo nucifera HOM05D005827 ORTHO05D005864 6.2e-40 167.9 161 61.5
FAN08G1793 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.1e-39 167.2 127 68.5
QL11p033993 Quercus lobata HOM05D005827 ORTHO05D005864 3.1e-39 165.6 151 63.6
FAN18G4374 Fragaria x ananassa HOM05D005827 ORTHO05D005864 9.0e-39 164.1 127 66.9
FAN13G0291 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.2e-38 163.7 127 66.9
Gohir.D02G207600 Gossypium hirsutum HOM05D005827 ORTHO05D005864 1.2e-38 163.7 130 69.2
FvH4_5g29540 Fragaria vesca HOM05D005827 ORTHO05D005864 2.6e-38 162.5 127 67.7
TAR625G0497 Trochodendron aralioides HOM05D005827 ORTHO05D005864 2.6e-38 162.5 161 57.1
TAR625G1254 Trochodendron aralioides HOM05D005827 ORTHO05D005864 2.6e-38 162.5 161 57.1
GSVIVG01003168001 Vitis vinifera HOM05D005827 ORTHO05D005864 7.6e-38 161.0 163 61.3
RcHm_v2.0_Chr7g0222441 Rosa chinensis HOM05D005827 ORTHO05D005864 9.9e-38 160.6 128 66.4
Haze_10160 Corylus avellana HOM05D005827 ORTHO05D005864 1.3e-37 160.2 125 68.0
EL10Ac9g22299 Beta vulgaris HOM05D005827 ORTHO05D005864 2.9e-37 159.1 161 55.9
THA.LOC104823732 Tarenaya hassleriana HOM05D005827 ORTHO05D005864 3.8e-37 158.7 162 57.4
FAN04G0262 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.1e-36 157.1 147 60.5
Cpa.g.sc246.10 Carica papaya HOM05D005827 ORTHO05D005864 3.2e-36 155.6 161 58.4
BcaB07g30381 Brassica carinata HOM05D005827 ORTHO05D005864 7.1e-36 154.5 150 58.0
Actinidia00415 Actinidia chinensis HOM05D005827 ORTHO05D005864 9.3e-36 154.1 100 86.0
A02p32240 Brassica napus HOM05D005827 ORTHO05D005864 1.6e-35 153.3 152 57.9
BraA02t08240Z Brassica rapa HOM05D005827 ORTHO05D005864 1.6e-35 153.3 152 57.9
BcaC03g17064 Brassica carinata HOM05D005827 ORTHO05D005864 2.1e-35 152.9 152 57.9
COL.COLO4_32605 Corchorus olitorius HOM05D005827 ORTHO05D005864 2.7e-35 152.5 165 55.2
Sabra09G0074500 Salix brachista HOM05D005827 ORTHO05D005864 3.5e-35 152.1 188 51.1
AL5G10740 Arabidopsis lyrata HOM05D005827 ORTHO05D005864 6.0e-35 151.4 127 65.4
BolC2t11063H Brassica oleracea HOM05D005827 ORTHO05D005864 6.0e-35 151.4 152 57.2
C02p49840 Brassica napus HOM05D005827 ORTHO05D005864 7.8e-35 151.0 152 57.2
Migut.N01172 Erythranthe guttata HOM05D005827 ORTHO05D005864 7.8e-35 151.0 162 55.6
MD08G1229200 Malus domestica HOM05D005827 ORTHO05D005864 7.8e-35 151.0 133 63.2
Sp2g13090 Schrenkiella parvula HOM05D005827 ORTHO05D005864 1.3e-34 150.2 149 56.4
PGR042G1992 Punica granatum HOM05D005827 ORTHO05D005864 1.7e-34 149.8 131 61.8
SalBow3G3341 Salvia bowleyana HOM05D005827 ORTHO05D005864 2.3e-34 149.4 173 53.8
Carub.0005s0059 Capsella rubella HOM05D005827 ORTHO05D005864 3.9e-34 148.7 151 56.3
AT2G01640 Arabidopsis thaliana HOM05D005827 ORTHO05D005864 5.1e-34 148.3 127 64.6
SGA_v2.0_scaffold42G16001 Striga asiatica HOM05D005827 ORTHO05D005864 6.6e-34 147.9 162 57.4
Aqoxy5G03364 Aquilegia oxysepala HOM05D005827 ORTHO05D005864 1.1e-33 147.1 157 54.8
Sabra09G0074600 Salix brachista HOM05D005827 ORTHO05D005864 1.5e-33 146.7 160 55.0
AUR62010278 Chenopodium quinoa HOM05D005827 ORTHO05D005864 2.5e-33 146.0 161 54.0
Sc08g0001470 Simmondsia chinensis HOM05D005827 ORTHO05D005864 2.5e-33 146.0 162 56.2
ClCG04G002790 Citrullus lanatus HOM05D005827 ORTHO05D005864 9.6e-33 144.1 153 52.9
Sed0003004 Sechium edule HOM05D005827 ORTHO05D005864 1.3e-32 143.7 163 55.8
PSO170G4182 Papaver somniferum HOM05D005827 ORTHO05D005864 1.4e-31 140.2 159 52.8
Eucgr.H03226 Eucalyptus grandis HOM05D005827 ORTHO05D005864 1.8e-31 139.8 124 62.1
CsaV3_4G029930 Cucumis sativus L. HOM05D005827 ORTHO05D005864 6.9e-31 137.9 161 50.3
SGA_v2.0_scaffold393G50707 Striga asiatica HOM05D005827 ORTHO05D005864 1.5e-30 136.7 155 54.2
Lalb_Chr21g0308391 Lupinus albus HOM05D005827 ORTHO05D005864 5.8e-30 134.8 163 50.3
Thhalv10005665m.g Eutrema salsugineum HOM05D005827 ORTHO05D005864 9.9e-30 134.0 172 48.3
PSO210G1068 Papaver somniferum HOM05D005827 ORTHO05D005864 2.2e-29 132.9 159 52.2
Ca_30413_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 3.8e-29 132.1 165 52.1
CDE01G0172 Ceratophyllum demersum HOM05D005827 ORTHO05D005864 2.4e-28 129.4 156 50.6
TAR381G1673 Trochodendron aralioides HOM05D005827 ORTHO05D005864 2.4e-28 129.4 136 57.4
Aa31LG2G8260 Aethionema arabicum HOM05D005827 ORTHO05D005864 3.5e-27 125.6 128 55.5
Zm00001eb133530 Zea mays HOM05D005827 ORTHO05D005864 1.0e-26 124.0 162 50.0
unitig_94.g28296 Utricularia gibba HOM05D005827 ORTHO05D005864 1.8e-26 123.2 162 46.9
unitig_94.g28309 Utricularia gibba HOM05D005827 ORTHO05D005864 1.8e-26 123.2 162 46.9
Ca_06388_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 2.3e-26 122.9 131 55.0
Phvul.007G038800 Phaseolus vulgaris HOM05D005827 ORTHO05D005864 3.9e-26 122.1 164 50.0
Hund00127 Selenicereus undatus HOM05D005827 ORTHO05D005864 5.1e-26 121.7 100 68.0
TWI31G0230 Tripterygium wilfordii HOM05D005827 ORTHO05D005864 5.1e-26 121.7 125 60.0
MELO3C003274.2 Cucumis melo HOM05D005827 ORTHO05D005864 6.7e-26 121.3 134 52.2
Glyma.12G113700 Glycine max HOM05D005827 ORTHO05D005864 6.7e-26 121.3 151 50.3
HPP92_026144 Vanilla planifolia HOM05D005827 ORTHO05D005864 6.7e-26 121.3 159 47.2
Ciclev10030223m.g Citrus clementina HOM05D005827 ORTHO05D005864 8.7e-26 120.9 118 60.2
arahy.Tifrunner.gnm1.ann1.M92LVR Arachis hypogaea HOM05D005827 ORTHO05D005864 4.3e-25 118.6 157 46.5
Os12g0244500 Oryza sativa ssp. japonica HOM05D005827 ORTHO05D005864 5.6e-25 118.2 140 53.6
Hund00128 Selenicereus undatus HOM05D005827 ORTHO05D005864 1.3e-24 117.1 114 60.5
arahy.Tifrunner.gnm1.ann1.HL4A43 Arachis hypogaea HOM05D005827 ORTHO05D005864 2.1e-24 116.3 151 47.0
Nn2g12688 Nelumbo nucifera HOM05D005827 ORTHO05D005864 2.6e-22 109.4 91 63.7
ATR0827G109 Amborella trichopoda HOM05D005827 ORTHO05D005864 2.9e-21 105.9 146 45.2
Glyma.20G127400 Glycine max HOM05D005827 ORTHO05D005864 7.1e-20 101.3 150 45.3
Psat6g219720 Pisum sativum HOM05D005827 ORTHO05D005864 6.0e-19 98.2 175 42.9
AUR62044681 Chenopodium quinoa HOM05D005827 ORTHO05D005864 5.1e-18 95.1 87 56.3
AUR62039111 Chenopodium quinoa HOM05D005827 ORTHO05D005864 6.7e-18 94.7 75 64.0
MELO3C033554.2 Cucumis melo HOM05D005827 ORTHO05D005864 7.4e-17 91.3 92 53.3
QL11p034007 Quercus lobata HOM05D005827 ORTHO05D005864 9.6e-17 90.9 97 55.7
Aa31sc215G30 Aethionema arabicum HOM05D005827 ORTHO05D005864 1.3e-16 90.5 119 46.2
Lj5g0000760 Lotus japonicus HOM05D005827 ORTHO05D005864 2.1e-16 89.7 109 49.5
CiPaw.07G088900 Carya illinoinensis HOM05D005827 ORTHO05D005864 4.8e-16 88.6 93 57.0
MD05G1087800 Malus domestica HOM05D005827 ORTHO05D005864 6.2e-16 88.2 116 44.8
Lj3g0023632 Lotus japonicus HOM05D005827 ORTHO05D005864 2.4e-15 86.3 109 47.7
SEGI_38856 Sequoiadendron giganteum HOM05D005827 ORTHO05D005864 5.3e-15 85.1 145 39.3
TPR.G13876 Trifolium pratense HOM05D005827 ORTHO05D005864 5.3e-15 85.1 112 49.1
Zm00001eb207600 Zea mays HOM05D005827 ORTHO05D005864 6.9e-15 84.7 83 62.7
ATR0691G195 Amborella trichopoda HOM05D005827 ORTHO05D005864 2.0e-14 83.2 78 53.8
SMO364G0308 Selaginella moellendorffii HOM05D005827 ORTHO05D000003 3.4e-14 82.4 112 41.1
Zm00001eb006370 Zea mays HOM05D005827 ORTHO05D005864 4.5e-14 82.0 83 61.4
Zm00001eb350190 Zea mays HOM05D005827 ORTHO05D005864 5.8e-14 81.6 118 50.8
Pp3c21_2370 Physcomitrium patens HOM05D005827 ORTHO05D005864 2.9e-13 79.3 143 40.6
Mapoly0052s0016 Marchantia polymorpha HOM05D005827 ORTHO05D005864 3.8e-13 79.0 134 41.8
Zm00001eb324360 Zea mays HOM05D005827 ORTHO05D005864 6.5e-13 78.2 133 44.4
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 1.1e-12 77.4 112 42.0
Zm00001eb091410 Zea mays HOM05D005827 ORTHO05D005864 4.2e-12 75.5 83 57.8
Zm00001eb259520 Zea mays HOM05D005827 ORTHO05D005864 4.2e-12 75.5 119 47.1
CANSAT25G3357 Cannabis sativa HOM05D005827 ORTHO05D005864 9.3e-12 74.3 81 50.6
Medtr1g107495 Medicago truncatula HOM05D005827 ORTHO05D005864 1.6e-11 73.6 94 46.8
Zm00001eb324920 Zea mays HOM05D005827 ORTHO05D005864 1.6e-11 73.6 118 47.5
ClCG01G025500 Citrullus lanatus HOM05D005827 ORTHO05D005864 3.9e-10 68.9 108 40.7
AagrBONN_evm.TU.Sc2ySwM_228.4380 Anthoceros agrestis HOM05D005827 ORTHO05D005864 3.7e-08 62.4 93 46.2
Ah.01g018070 Amaranthus hybridus HOM05D007150 ORTHO05D008994 4.8e-08 62.0 70 52.9


User provided reference genes

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