Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 4.6e-106 387.9 192 100.0
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 2.6e-77 292.4 168 91.1
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 2.8e-71 272.3 168 83.9
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 5.7e-64 248.1 168 76.8
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 6.3e-63 244.6 168 74.4
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 2.5e-59 232.6 168 72.0
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 5.5e-59 231.5 178 68.5
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 2.1e-58 229.6 170 69.4
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 3.9e-57 225.3 170 68.2
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 9.7e-56 220.7 170 66.5
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 2.2e-55 219.5 170 64.7
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 4.8e-55 218.4 170 65.9
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 8.2e-55 217.6 168 67.9
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 2.4e-54 216.1 177 61.6
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 2.4e-54 216.1 182 64.8
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 9.1e-54 214.2 185 59.5
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 1.2e-53 213.8 177 61.6
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 1.5e-53 213.4 168 65.5
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 3.4e-53 212.2 175 62.3
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 4.5e-53 211.8 177 61.0
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 7.7e-53 211.1 168 64.9
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 7.7e-53 211.1 177 59.9
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 1.0e-52 210.7 168 66.1
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 1.0e-52 210.7 182 63.2
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.3e-52 210.3 175 61.1
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 1.3e-52 210.3 177 59.9
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 1.3e-52 210.3 177 59.9
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 8.5e-52 207.6 168 64.3
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 1.4e-51 206.8 168 62.5
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 3.2e-51 205.7 168 66.1
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 7.2e-51 204.5 168 63.1
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 1.6e-50 203.4 177 60.5
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 4.7e-50 201.8 182 59.3
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 6.1e-50 201.4 182 61.0
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 7.9e-50 201.1 168 61.3
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 7.9e-50 201.1 168 62.5
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 1.0e-49 200.7 150 68.7
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 3.9e-49 198.7 168 61.3
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 5.1e-49 198.4 168 61.3
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 1.5e-48 196.8 182 57.7
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 7.4e-48 194.5 172 58.7
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 7.4e-48 194.5 168 60.7
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 9.7e-48 194.1 166 62.0
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 1.7e-47 193.4 168 58.3
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 3.7e-47 192.2 175 58.3
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 4.8e-47 191.8 182 54.4
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 6.3e-47 191.4 175 58.9
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 8.2e-47 191.0 175 58.9
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 8.2e-47 191.0 175 58.9
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 8.2e-47 191.0 175 58.9
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 1.1e-46 190.7 166 60.2
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 2.4e-46 189.5 168 58.3
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 3.1e-46 189.1 168 60.7
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 5.3e-46 188.3 149 68.5
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 7.0e-46 188.0 168 59.5
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 1.2e-45 187.2 168 61.3
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 1.5e-45 186.8 168 58.3
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 2.0e-45 186.4 168 58.3
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 2.0e-45 186.4 168 60.1
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 2.0e-45 186.4 175 58.3
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 2.6e-45 186.0 175 56.6
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 2.6e-45 186.0 175 60.0
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 3.4e-45 185.7 167 59.9
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 3.4e-45 185.7 187 56.7
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 3.4e-45 185.7 175 58.3
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 4.5e-45 185.3 175 60.0
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 5.9e-45 184.9 168 57.1
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 5.9e-45 184.9 175 57.7
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 5.9e-45 184.9 175 57.7
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 5.9e-45 184.9 175 57.7
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 7.7e-45 184.5 168 59.5
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 7.7e-45 184.5 168 61.3
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 1.0e-44 184.1 182 53.8
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.3e-44 183.7 168 58.9
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.3e-44 183.7 168 58.9
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 1.3e-44 183.7 175 57.7
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 1.3e-44 183.7 182 53.8
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 1.7e-44 183.3 168 56.0
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 5.0e-44 181.8 187 53.5
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 6.5e-44 181.4 168 59.5
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 6.5e-44 181.4 174 55.7
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 8.5e-44 181.0 175 57.7
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 8.5e-44 181.0 187 54.0
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 8.5e-44 181.0 168 58.9
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 8.5e-44 181.0 168 58.9
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 1.1e-43 180.6 165 60.6
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 1.1e-43 180.6 167 56.3
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 1.9e-43 179.9 168 58.9
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 1.9e-43 179.9 187 53.5
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 1.9e-43 179.9 168 59.5
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 2.5e-43 179.5 168 57.1
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 2.5e-43 179.5 168 56.5
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 3.2e-43 179.1 167 59.9
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 3.2e-43 179.1 168 56.0
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 7.2e-43 177.9 167 59.3
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 7.2e-43 177.9 167 59.3
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 1.6e-42 176.8 168 58.9
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 1.6e-42 176.8 168 56.5
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 2.7e-42 176.0 168 53.6
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 3.6e-42 175.6 187 53.5
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 4.7e-42 175.3 168 57.1
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 4.7e-42 175.3 160 58.1
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 8.0e-42 174.5 176 51.1
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 3.0e-41 172.6 176 50.6
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 6.7e-41 171.4 176 51.1
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 2.0e-40 169.9 168 55.4
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 2.0e-40 169.9 163 57.1
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 2.6e-40 169.5 168 56.0
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 9.7e-40 167.5 168 54.2
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 1.7e-39 166.8 175 49.7
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 1.6e-37 160.2 138 60.1
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 1.0e-36 157.5 151 60.3
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 2.9e-36 156.0 191 47.6
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 6.5e-36 154.8 185 44.9
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 8.5e-36 154.5 175 51.4
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 1.1e-35 154.1 151 56.3
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.5e-35 153.7 185 44.3
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.9e-35 153.3 148 57.4
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 9.4e-35 151.0 179 50.3
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 2.7e-34 149.4 184 46.2
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 2.3e-33 146.4 136 58.8
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 5.7e-32 141.7 163 52.8
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.7e-29 132.9 175 41.1
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 1.0e-28 131.0 169 47.3
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.9e-28 129.4 170 41.8
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 3.8e-28 129.0 167 40.7
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.8e-25 120.2 98 67.3
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 8.8e-25 117.9 129 54.3
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 9.8e-24 114.4 101 59.4
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 4.5e-21 105.5 106 50.9
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.7e-20 103.6 113 54.0
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 8.0e-18 94.7 102 48.0
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 7.5e-16 88.2 173 34.1
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 2.4e-14 83.2 62 66.1
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 4.5e-13 79.0 58 63.8
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 1.0e-12 77.8 170 27.1
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 3.8e-12 75.9 67 59.7
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 1.1e-11 74.3 65 63.1
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 3.3e-11 72.8 64 65.6
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 1.8e-09 67.0 63 55.6
vmacro01419 Vaccinium macrocarpon HOM05D005619 ORTHO05D006696 6.8e-09 65.1 68 55.9
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 5.8e-08 62.0 175 28.0


User provided reference genes

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