Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 3.8e-131 471.5 229 100.0
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 6.5e-99 364.4 179 99.4
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 1.6e-81 306.6 229 69.0
Hma1.2p1_4204F.1_g338450 Hydrangea macrophylla HOM05D008077 ORTHO05D010221 1.7e-75 286.6 228 65.8
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 8.5e-75 284.3 224 68.8
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 8.5e-75 284.3 224 66.5
Actinidia10235 Actinidia chinensis HOM05D008077 ORTHO05D010221 3.0e-72 275.8 227 67.0
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 6.3e-62 241.5 219 58.4
QL09p016211 Quercus lobata HOM05D008077 ORTHO05D010221 7.5e-55 218.0 230 50.0
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 7.7e-52 208.0 232 48.7
Haze_22366 Corylus avellana HOM05D008077 ORTHO05D010221 1.3e-51 207.2 215 51.6
Cfa013722 Carpinus fangiana HOM05D008077 ORTHO05D010221 3.8e-51 205.7 215 51.2
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 3.8e-51 205.7 217 48.4
Atru.chr13.887 Acer truncatum HOM05D008077 ORTHO05D010221 2.5e-50 203.0 222 50.0
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 5.5e-50 201.8 202 50.5
Prupe.1G417600 Prunus persica HOM05D008077 ORTHO05D010221 4.0e-48 195.7 224 47.8
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 3.4e-47 192.6 234 42.7
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 7.5e-47 191.4 222 45.0
CiPaw.08G053400 Carya illinoinensis HOM05D008077 ORTHO05D010221 1.7e-46 190.3 163 55.8
RcHm_v2.0_Chr6g0310221 Rosa chinensis HOM05D008077 ORTHO05D010221 2.2e-46 189.9 230 47.0
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 4.9e-46 188.7 183 51.4
Cc10_g07800 Coffea canephora HOM05D008077 ORTHO05D010221 1.8e-45 186.8 224 46.9
MSTRG.22201 Avicennia marina HOM05D008077 ORTHO05D010221 3.2e-45 186.0 228 46.5
Potri.005G149500 Populus trichocarpa HOM05D008077 ORTHO05D010221 9.2e-45 184.5 221 46.2
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 1.2e-44 184.1 174 51.7
Oeu048561.1 Olea europaea HOM05D008077 ORTHO05D010221 2.7e-44 183.0 154 58.4
FAN24G1375 Fragaria x ananassa HOM05D008077 ORTHO05D010221 3.5e-44 182.6 179 51.4
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 1.3e-43 180.6 223 43.5
FvH4_2g32450 Fragaria vesca HOM05D008077 ORTHO05D010221 2.3e-43 179.9 179 50.8
FAN20G1346 Fragaria x ananassa HOM05D008077 ORTHO05D010221 3.9e-43 179.1 179 51.4
MD08G1076300 Malus domestica HOM05D008077 ORTHO05D010221 6.6e-43 178.3 185 48.6
EL10Ac1g02339 Beta vulgaris HOM05D008077 ORTHO05D010221 8.6e-43 177.9 208 45.7
Sabra05G0118800 Salix brachista HOM05D008077 ORTHO05D010221 5.6e-42 175.3 165 52.7
arahy.Tifrunner.gnm1.ann1.JS0EE0 Arachis hypogaea HOM05D008077 ORTHO05D010221 1.2e-41 174.1 205 46.3
arahy.Tifrunner.gnm1.ann1.PWM57A Arachis hypogaea HOM05D008077 ORTHO05D010221 3.6e-41 172.6 205 46.3
Eucgr.F02208 Eucalyptus grandis HOM05D008077 ORTHO05D010221 3.6e-41 172.6 210 47.6
Phvul.001G032000 Phaseolus vulgaris HOM05D008077 ORTHO05D010221 1.4e-40 170.6 168 51.2
Lalb_Chr14g0367971 Lupinus albus HOM05D008077 ORTHO05D010221 3.1e-40 169.5 211 43.6
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 3.1e-40 169.5 194 43.3
Glyma.17G232225 Glycine max HOM05D008077 ORTHO05D010221 4.0e-40 169.1 205 46.8
ClCG05G017630 Citrullus lanatus HOM05D008077 ORTHO05D010221 1.5e-39 167.2 214 43.0
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 1.5e-39 167.2 179 49.7
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 1.5e-39 167.2 184 46.7
FAN27G3028 Fragaria x ananassa HOM05D008077 ORTHO05D010221 2.0e-39 166.8 217 44.2
VMungo0647G0255 Vigna mungo HOM05D008077 ORTHO05D010221 2.0e-39 166.8 178 48.9
AUR62034975 Chenopodium quinoa HOM05D008077 ORTHO05D010221 7.5e-39 164.9 163 47.9
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 7.5e-39 164.9 183 47.0
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 7.5e-39 164.9 179 49.2
CsaV3_4G035360 Cucumis sativus L. HOM05D008077 ORTHO05D010221 1.3e-38 164.1 227 41.9
AUR62039341 Chenopodium quinoa HOM05D008077 ORTHO05D010221 1.7e-38 163.7 157 49.7
Gohir.A01G124500 Gossypium hirsutum HOM05D008077 ORTHO05D010221 4.9e-38 162.2 180 48.3
Ciclev10002390m.g Citrus clementina HOM05D008077 ORTHO05D010221 8.3e-38 161.4 173 45.7
FAN15G0649 Fragaria x ananassa HOM05D008077 ORTHO05D010221 1.9e-37 160.2 179 48.0
Ca_06992_v3 Cicer arietinum L. HOM05D008077 ORTHO05D010221 2.0e-36 156.8 204 43.6
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 2.7e-36 156.4 212 39.6
PGR031G0263 Punica granatum HOM05D008077 ORTHO05D010221 2.7e-36 156.4 218 41.3
Psat6g018560 Pisum sativum HOM05D008077 ORTHO05D010221 7.8e-36 154.8 149 51.7
Hund05263 Selenicereus undatus HOM05D008077 ORTHO05D010221 8.6e-35 151.4 198 38.9
TPR.G13063 Trifolium pratense HOM05D008077 ORTHO05D010221 1.5e-34 150.6 168 46.4
Medtr1g017160 Medicago truncatula HOM05D008077 ORTHO05D010221 5.6e-34 148.7 213 40.8
CDE06G2465 Ceratophyllum demersum HOM05D008077 ORTHO05D010221 2.0e-31 140.2 177 39.0
THA.LOC104806984 Tarenaya hassleriana HOM05D008077 ORTHO05D010221 4.4e-31 139.0 170 40.0
Migut.N02805 Erythranthe guttata HOM05D008077 ORTHO05D010221 9.8e-31 137.9 160 45.6
Sed0028055 Sechium edule HOM05D008077 ORTHO05D010221 8.6e-27 124.8 130 47.7
COL.COLO4_28429 Corchorus olitorius HOM05D008077 ORTHO05D010221 9.5e-26 121.3 138 48.6
unitig_578.g16165 Utricularia gibba HOM05D008077 ORTHO05D010221 3.1e-24 116.3 143 43.4
Lj5g0022198 Lotus japonicus HOM05D008077 ORTHO05D010221 1.3e-22 110.9 108 50.0
MELO3C016846.2 Cucumis melo HOM05D008077 ORTHO05D010221 3.7e-22 109.4 172 38.4
SGA_v2.0_scaffold152G36867 Striga asiatica HOM05D008077 ORTHO05D010221 2.1e-20 103.6 137 46.0
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 5.6e-18 95.5 153 34.6
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 1.2e-17 94.4 169 32.5
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 2.1e-17 93.6 138 39.1
HPP92_006033 Vanilla planifolia HOM05D008077 ORTHO05D010221 2.1e-17 93.6 114 37.7
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 2.8e-17 93.2 165 30.9
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 3.6e-17 92.8 180 31.1
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 3.6e-17 92.8 164 30.5
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 3.6e-17 92.8 157 34.4
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 3.6e-17 92.8 152 33.6
TPR.G13160 Trifolium pratense HOM05D008077 ORTHO05D010221 3.6e-17 92.8 188 34.6
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 6.2e-17 92.0 226 29.2
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 8.1e-17 91.7 152 29.6
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 1.1e-16 91.3 210 31.9
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 1.4e-16 90.9 143 35.7
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 1.4e-16 90.9 152 32.9
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 1.8e-16 90.5 157 33.1
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 1.8e-16 90.5 156 34.0
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 1.8e-16 90.5 156 34.0
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 4.0e-16 89.4 158 32.9
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 5.2e-16 89.0 172 28.5
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 5.2e-16 89.0 187 29.9
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 6.8e-16 88.6 169 27.2
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 6.8e-16 88.6 200 29.5
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 1.2e-15 87.8 140 31.4
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 1.5e-15 87.4 156 32.7
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 2.6e-15 86.7 152 32.9
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 3.4e-15 86.3 149 31.5
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 3.4e-15 86.3 152 32.9
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 3.4e-15 86.3 155 32.3
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 4.4e-15 85.9 142 34.5
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 5.8e-15 85.5 165 30.3
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 5.8e-15 85.5 153 32.0
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 5.8e-15 85.5 165 30.3
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 7.6e-15 85.1 155 31.6
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 9.9e-15 84.7 135 33.3
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 1.3e-14 84.3 190 29.5
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 1.7e-14 84.0 226 28.3
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 3.8e-14 82.8 140 33.6
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 3.8e-14 82.8 169 30.2
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 4.9e-14 82.4 134 33.6
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 4.9e-14 82.4 148 30.4
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 6.4e-14 82.0 185 26.5
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 1.1e-13 81.3 140 29.3
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 1.4e-13 80.9 165 29.1
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 1.4e-13 80.9 135 32.6
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 1.4e-13 80.9 135 32.6
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 1.4e-13 80.9 151 31.1
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 1.4e-13 80.9 165 28.5
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 1.4e-13 80.9 164 26.2
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 1.4e-13 80.9 182 28.6
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.9e-13 80.5 138 29.7
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 1.9e-13 80.5 139 31.7
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 2.4e-13 80.1 135 31.9
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 2.4e-13 80.1 135 31.9
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 2.4e-13 80.1 140 30.7
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 2.4e-13 80.1 181 28.7
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 3.2e-13 79.7 214 27.6
MSTRG.5374 Avicennia marina HOM05D007054 ORTHO05D008888 4.2e-13 79.3 169 25.4
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 7.1e-13 78.6 164 29.3
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 1.2e-12 77.8 163 28.8
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 1.2e-12 77.8 150 28.7
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 1.6e-12 77.4 140 30.7
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 2.1e-12 77.0 155 27.7
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 2.1e-12 77.0 155 27.7
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 2.1e-12 77.0 140 29.3
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 2.7e-12 76.6 135 31.1
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 2.7e-12 76.6 162 27.8
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 3.5e-12 76.3 154 28.6
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 3.5e-12 76.3 159 30.2
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 3.5e-12 76.3 156 29.5
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 4.6e-12 75.9 171 26.9
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 6.0e-12 75.5 135 29.6
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 6.0e-12 75.5 179 26.8
HanXRQChr12g0374541 Helianthus annuus HOM05D007054 ORTHO05D008888 7.8e-12 75.1 149 29.5
MD15G1063400 Malus domestica HOM05D008077 ORTHO05D010221 1.0e-11 74.7 111 40.5
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 1.7e-11 73.9 140 29.3
Lsat_1_v5_gn_5_117740 Lactuca sativa HOM05D007054 ORTHO05D008888 2.3e-11 73.6 147 27.9
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 3.0e-11 73.2 128 28.1
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 3.0e-11 73.2 140 29.3
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 3.0e-11 73.2 140 29.3
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 3.9e-11 72.8 140 29.3
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 3.9e-11 72.8 140 29.3
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 3.9e-11 72.8 154 27.9
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 5.1e-11 72.4 143 29.4
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 5.1e-11 72.4 141 31.2
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 6.6e-11 72.0 141 31.2
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 1.1e-10 71.2 140 28.6
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.3e-09 67.8 148 27.0
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 2.1e-09 67.0 134 28.4
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 6.2e-09 65.5 134 28.4
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 2.9e-06 56.6 129 25.6


User provided reference genes

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