Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 0.0e+00 1325.8 649 100.0
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 0.0e+00 1308.5 649 98.9
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 1.7e-301 1038.9 650 79.4
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 4.1e-284 981.1 653 75.2
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 6.2e-280 967.2 651 73.1
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 1.1e-276 956.4 614 77.0
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 4.7e-272 941.0 657 70.3
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 4.7e-272 941.0 657 70.8
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 8.9e-271 936.8 657 71.2
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 1.9e-268 929.1 656 69.7
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 1.6e-264 916.0 657 68.0
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 8.1e-264 913.7 685 67.2
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 8.1e-264 913.7 653 68.3
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.4e-263 912.9 653 67.7
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 4.0e-263 911.4 652 69.3
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 2.0e-262 909.1 653 67.8
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 4.9e-261 904.4 658 67.8
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 1.1e-260 903.3 652 69.2
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 3.2e-260 901.7 658 67.5
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 1.2e-259 899.8 653 67.4
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 7.8e-259 897.1 654 66.7
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 7.8e-259 897.1 654 67.0
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 3.9e-258 894.8 653 66.5
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 1.1e-257 893.3 652 67.0
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 1.5e-257 892.9 657 67.9
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 3.3e-257 891.7 654 67.7
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 8.1e-256 887.1 651 66.7
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 1.3e-253 879.8 659 66.9
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 7.1e-252 874.0 654 65.3
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 1.6e-251 872.8 646 67.5
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 1.6e-251 872.8 648 66.5
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 3.5e-251 871.7 658 65.7
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 1.3e-250 869.8 654 64.8
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 2.3e-250 869.0 655 64.7
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 1.9e-249 865.9 657 66.1
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 4.3e-249 864.8 654 66.2
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 1.6e-248 862.8 659 65.4
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 1.1e-247 860.1 660 63.9
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 1.4e-247 859.8 650 64.5
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 2.4e-247 859.0 642 67.3
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 4.0e-247 858.2 658 64.9
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 4.0e-247 858.2 652 65.5
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 5.3e-247 857.8 651 65.4
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 5.3e-247 857.8 651 65.4
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 1.2e-246 856.7 650 64.8
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 3.4e-246 855.1 651 65.0
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 4.5e-246 854.7 657 65.0
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 7.6e-246 854.0 657 65.6
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 2.9e-245 852.0 654 64.8
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 8.4e-245 850.5 650 64.8
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 1.1e-244 850.1 650 64.8
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 1.2e-243 846.7 658 63.4
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 1.6e-243 846.3 657 64.7
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 2.1e-243 845.9 650 64.3
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 2.3e-242 842.4 651 64.4
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 3.0e-242 842.0 660 64.5
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 1.1e-241 840.1 649 64.6
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 9.6e-241 837.0 650 64.2
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 6.2e-240 834.3 650 64.0
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 6.2e-240 834.3 618 66.7
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 1.1e-239 833.6 648 63.4
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 1.1e-239 833.6 651 64.7
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 1.4e-239 833.2 654 63.9
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 2.4e-239 832.4 657 63.3
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 4.1e-239 831.6 652 64.0
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 1.5e-238 829.7 651 63.9
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 1.0e-237 827.0 657 63.9
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 2.9e-237 825.5 664 63.1
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 1.1e-236 823.5 657 62.9
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 4.2e-236 821.6 652 63.5
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 2.7e-235 818.9 662 62.7
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 2.7e-235 818.9 654 64.8
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 3.5e-235 818.5 650 63.8
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 1.8e-234 816.2 657 62.9
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 3.9e-234 815.1 636 64.9
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 3.3e-233 812.0 621 64.3
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 1.3e-232 810.1 636 64.5
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 1.1e-231 807.0 663 61.8
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 4.1e-231 805.1 582 71.8
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 8.5e-229 797.3 539 72.4
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 1.0e-226 790.4 649 60.7
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 9.7e-225 783.9 658 59.4
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 1.5e-217 760.0 647 58.1
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 1.5e-217 760.0 693 57.9
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 3.3e-217 758.8 620 64.5
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.1e-215 753.8 650 56.3
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 2.7e-211 739.2 580 63.3
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 1.0e-210 737.3 486 76.1
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 4.8e-200 701.8 648 55.1
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 7.2e-188 661.4 668 52.2
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 9.5e-188 661.0 586 54.8
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 2.3e-181 639.8 690 50.4
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 6.6e-181 638.3 593 58.2
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 1.6e-179 633.6 513 63.0
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 2.6e-153 546.6 474 58.9
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 2.6e-153 546.6 556 53.6
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 2.4e-143 513.5 657 42.9
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 4.2e-135 486.1 644 43.5
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 4.3e-132 476.1 631 41.8
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 4.0e-130 469.5 254 86.6
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 2.0e-113 414.1 426 51.4
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 2.6e-113 413.7 389 52.2
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 6.5e-104 382.5 483 44.9
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 1.8e-101 374.4 364 54.1
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 4.2e-95 353.2 636 36.9
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 1.2e-94 351.7 502 42.4
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 1.2e-94 351.7 178 88.2
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 6.1e-94 349.4 297 62.3
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.0e-80 305.4 197 73.6
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 8.3e-59 232.6 271 44.6
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 3.9e-56 223.8 170 65.3
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 3.9e-56 223.8 104 96.2
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 8.1e-54 216.1 106 88.7
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 2.1e-46 191.4 219 43.8
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 7.3e-39 166.4 492 30.3
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 5.8e-36 156.8 200 42.0
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.3e-35 155.6 202 44.6
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 6.4e-35 153.3 137 60.6
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 1.6e-30 138.7 153 52.3
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 1.7e-27 128.6 68 86.8
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 3.8e-27 127.5 58 91.4
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 2.3e-24 118.2 83 66.3
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 2.1e-22 111.7 100 54.0
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 6.2e-22 110.2 74 70.3
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 4.9e-19 100.5 72 65.3
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 2.3e-16 91.7 78 60.3
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 3.9e-16 90.9 78 60.3
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 5.1e-16 90.5 78 59.0
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 1.9e-15 88.6 78 59.0
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 2.5e-15 88.2 78 57.7
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 1.6e-14 85.5 78 57.7
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 3.8e-11 74.3 75 54.7
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 3.8e-11 74.3 75 53.3
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 6.0e-09 67.0 99 42.4
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 7.4e-07 60.1 99 38.4


User provided reference genes

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