Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 1.9e-85 319.3 185 100.0
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 5.7e-53 211.5 167 70.1
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 3.4e-50 202.2 170 65.9
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 2.3e-46 189.5 169 60.4
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 1.1e-45 187.2 113 85.0
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 5.7e-45 184.9 172 59.3
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 9.7e-45 184.1 185 57.3
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 9.7e-45 184.1 161 65.8
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 1.6e-44 183.3 177 57.6
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 2.8e-44 182.6 149 65.1
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 4.8e-44 181.8 171 59.1
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 8.2e-44 181.0 145 64.1
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 3.1e-43 179.1 153 63.4
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 6.9e-43 177.9 149 65.1
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 1.5e-42 176.8 165 57.6
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 2.6e-42 176.0 167 59.3
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 4.5e-42 175.3 149 63.1
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 1.0e-41 174.1 147 61.9
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 1.0e-41 174.1 147 61.9
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 2.9e-41 172.6 147 65.3
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 3.8e-41 172.2 150 60.0
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 3.8e-41 172.2 127 68.5
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 3.8e-41 172.2 146 61.6
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 8.5e-41 171.0 145 64.1
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 8.5e-41 171.0 178 55.1
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 1.1e-40 170.6 169 57.4
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 1.4e-40 170.2 142 63.4
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 2.5e-40 169.5 148 62.2
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 3.2e-40 169.1 150 59.3
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 4.2e-40 168.7 174 52.9
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 4.2e-40 168.7 142 61.3
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 5.5e-40 168.3 165 58.2
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 1.2e-39 167.2 174 52.3
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 2.1e-39 166.4 170 53.5
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 2.1e-39 166.4 170 53.5
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 3.6e-39 165.6 160 55.6
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 6.1e-39 164.9 152 61.2
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 7.9e-39 164.5 170 56.5
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 7.9e-39 164.5 124 68.5
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 7.9e-39 164.5 124 68.5
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 1.0e-38 164.1 154 55.2
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 1.0e-38 164.1 127 65.4
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 1.0e-38 164.1 146 57.5
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 1.0e-38 164.1 157 52.9
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 2.3e-38 162.9 174 57.5
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 3.9e-38 162.2 171 53.8
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 3.9e-38 162.2 153 60.1
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 6.7e-38 161.4 146 61.0
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 1.5e-37 160.2 142 59.9
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 2.6e-37 159.5 156 55.8
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 2.6e-37 159.5 145 55.2
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 5.7e-37 158.3 125 61.6
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 5.7e-37 158.3 149 59.7
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 5.7e-37 158.3 149 59.7
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 1.3e-36 157.1 138 70.3
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 1.3e-36 157.1 133 59.4
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 1.3e-36 157.1 141 58.2
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 2.8e-36 156.0 151 57.0
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 3.7e-36 155.6 134 59.7
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 4.8e-36 155.2 146 58.2
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 8.2e-36 154.5 199 46.7
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 8.2e-36 154.5 147 57.1
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 8.2e-36 154.5 145 54.5
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 1.1e-35 154.1 138 68.1
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 1.8e-35 153.3 162 56.8
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 2.4e-35 152.9 147 59.2
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 2.4e-35 152.9 123 63.4
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 9.1e-35 151.0 154 53.9
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 3.4e-34 149.1 174 51.1
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 3.4e-34 149.1 158 51.9
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 5.9e-34 148.3 174 49.4
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 7.7e-34 147.9 147 52.4
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 1.7e-33 146.7 147 54.4
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 2.9e-33 146.0 171 52.0
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 2.9e-33 146.0 182 50.0
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 3.8e-33 145.6 172 46.5
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 5.0e-33 145.2 146 54.1
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 1.4e-32 143.7 141 52.5
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 2.5e-32 142.9 148 53.4
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 2.5e-32 142.9 126 59.5
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 3.2e-32 142.5 126 60.3
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 3.2e-32 142.5 122 63.1
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 3.2e-32 142.5 140 52.9
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 4.2e-32 142.1 141 56.0
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 4.2e-32 142.1 178 48.9
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 7.2e-32 141.4 196 44.9
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 9.4e-32 141.0 126 57.9
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 9.4e-32 141.0 126 57.9
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 1.6e-31 140.2 136 54.4
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 1.6e-31 140.2 100 68.0
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 2.1e-31 139.8 137 55.5
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 3.6e-31 139.0 174 47.7
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 4.7e-31 138.7 139 54.7
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 6.1e-31 138.3 148 52.0
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 1.8e-30 136.7 125 57.6
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 3.9e-30 135.6 139 53.2
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 6.7e-30 134.8 139 52.5
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 6.7e-30 134.8 139 52.5
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 6.7e-30 134.8 139 52.5
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 6.7e-30 134.8 140 52.1
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 6.7e-30 134.8 139 52.5
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 6.7e-30 134.8 139 52.5
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 1.1e-29 134.0 139 52.5
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 2.0e-29 133.3 149 50.3
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 2.0e-29 133.3 144 52.1
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 2.0e-29 133.3 123 56.9
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 5.7e-29 131.7 148 53.4
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 1.3e-28 130.6 142 50.7
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 1.3e-28 130.6 156 49.4
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 2.8e-28 129.4 147 51.7
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 2.8e-28 129.4 123 53.7
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 2.8e-28 129.4 123 53.7
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 4.8e-28 128.6 118 55.9
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 4.8e-28 128.6 148 50.7
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 6.3e-28 128.3 124 54.0
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 1.4e-27 127.1 145 49.7
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 9.1e-27 124.4 147 49.7
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 3.5e-26 122.5 151 49.0
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 3.5e-26 122.5 136 50.0
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 7.2e-24 114.8 129 48.8
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 5.2e-22 108.6 123 49.6
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 8.8e-22 107.8 147 42.9
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 1.2e-21 107.5 147 43.5
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 3.3e-21 105.9 102 54.9
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 7.5e-21 104.8 152 42.1
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 8.2e-20 101.3 142 47.2
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 3.1e-19 99.4 114 48.2
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 1.6e-18 97.1 144 41.0
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 5.0e-17 92.0 148 39.9
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 1.5e-16 90.5 147 39.5
Mapoly0036s0026 Marchantia polymorpha HOM05D004872 ORTHO05D006050 2.2e-12 76.6 147 34.0
HanXRQChr17g0569331 Helianthus annuus HOM05D004872 ORTHO05D006050 2.8e-12 76.3 51 64.7
Aqoxy7G03168 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 3.7e-12 75.9 128 39.1
Pp3c23_7100 Physcomitrium patens HOM05D004872 ORTHO05D006050 3.7e-12 75.9 148 35.1
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 1.1e-11 74.3 118 44.9
AagrBONN_evm.TU.Sc2ySwM_362.236 Anthoceros agrestis HOM05D004872 ORTHO05D006050 2.4e-11 73.2 144 33.3
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 4.1e-11 72.4 101 43.6
SEGI_13451 Sequoiadendron giganteum HOM05D004872 ORTHO05D006050 1.0e-09 67.8 117 35.0
Ca_21429_v3 Cicer arietinum L. HOM05D004872 ORTHO05D006050 3.8e-09 65.9 76 50.0
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 5.0e-09 65.5 76 48.7
Duzib170G0487 Durio zibethinus HOM05D004872 ORTHO05D006050 2.3e-06 56.6 47 57.4


User provided reference genes

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