Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.5e-186 655.2 316 100.0
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.5e-172 608.2 316 93.0
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 1.9e-149 532.7 318 82.7
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 2.7e-148 528.9 316 81.0
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 4.5e-143 511.5 317 75.4
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 1.0e-142 510.4 315 77.5
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 2.9e-142 508.8 318 77.4
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 1.1e-141 506.9 314 77.1
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 1.4e-139 500.0 317 76.7
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.4e-139 500.0 317 77.0
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 2.3e-139 499.2 316 74.7
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 5.2e-139 498.0 315 76.2
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 6.8e-139 497.7 315 73.7
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 2.6e-138 495.7 317 76.0
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 7.5e-138 494.2 314 73.9
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 7.5e-138 494.2 315 74.6
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 9.7e-138 493.8 316 74.7
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 1.7e-137 493.0 315 72.7
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 2.2e-137 492.7 315 75.2
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 3.7e-137 491.9 315 74.6
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 8.3e-137 490.7 315 75.9
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 1.1e-136 490.3 316 73.4
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 1.1e-136 490.3 316 72.8
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 1.2e-135 486.9 322 72.7
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 1.2e-135 486.9 316 73.1
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 2.7e-135 485.7 315 74.9
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 4.5e-135 485.0 319 73.4
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 5.9e-135 484.6 316 73.4
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 5.9e-135 484.6 316 73.4
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 5.9e-135 484.6 319 73.0
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 1.0e-134 483.8 322 72.0
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 1.5e-133 479.9 317 71.6
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 4.2e-133 478.4 317 71.3
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 1.2e-132 476.9 316 70.9
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 1.2e-132 476.9 315 71.1
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 3.6e-132 475.3 315 70.5
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 6.1e-132 474.6 319 70.2
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 8.0e-132 474.2 315 71.4
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 8.0e-132 474.2 315 70.2
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 8.0e-132 474.2 316 72.2
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 1.0e-131 473.8 303 75.2
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 1.4e-131 473.4 316 71.5
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.8e-131 473.0 316 72.5
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 2.3e-131 472.6 316 70.6
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 2.3e-131 472.6 316 70.6
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.3e-131 472.6 319 70.2
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 4.0e-131 471.9 316 71.8
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 5.2e-131 471.5 314 71.0
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 6.8e-131 471.1 307 75.2
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.5e-130 469.9 319 69.9
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 4.4e-130 468.4 313 71.6
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 9.8e-130 467.2 318 71.1
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 1.3e-129 466.8 369 63.7
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.7e-129 466.5 292 75.3
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 1.7e-129 466.5 318 72.3
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 1.1e-128 463.8 316 70.6
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 3.1e-128 462.2 315 69.8
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 3.1e-128 462.2 315 69.8
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 3.1e-128 462.2 315 69.5
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 2.7e-127 459.1 315 69.2
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 4.5e-127 458.4 316 69.0
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 1.0e-126 457.2 317 69.4
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 1.3e-126 456.8 321 68.8
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 3.8e-126 455.3 315 68.3
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 3.8e-126 455.3 337 66.2
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 5.0e-126 454.9 316 69.6
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 8.6e-126 454.1 316 67.4
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 1.9e-125 453.0 320 69.1
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 4.2e-125 451.8 315 67.6
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 4.2e-125 451.8 315 66.7
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 7.2e-125 451.1 315 70.8
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 2.1e-124 449.5 321 67.9
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 3.6e-124 448.7 315 67.3
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 4.7e-124 448.4 317 67.5
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 6.1e-124 448.0 314 66.2
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 1.0e-123 447.2 318 67.0
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 1.8e-123 446.4 319 69.0
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 3.0e-123 445.7 316 66.5
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 6.8e-123 444.5 331 63.1
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 6.8e-123 444.5 367 60.5
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 6.8e-123 444.5 316 65.8
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 8.9e-123 444.1 318 66.0
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 8.9e-123 444.1 315 65.7
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 1.5e-122 443.4 317 65.9
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 2.6e-122 442.6 289 76.5
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 3.4e-122 442.2 313 67.4
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 4.4e-122 441.8 315 67.6
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 4.4e-122 441.8 315 67.3
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 5.7e-122 441.4 316 65.8
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 7.5e-122 441.0 316 65.8
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 9.8e-122 440.7 315 66.0
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 2.8e-121 439.1 315 65.7
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 2.8e-121 439.1 315 65.7
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 2.8e-121 439.1 315 66.0
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 2.8e-121 439.1 312 66.0
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 4.9e-121 438.3 315 65.4
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 4.9e-121 438.3 315 66.0
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 4.9e-121 438.3 315 65.7
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 1.1e-120 437.2 315 64.8
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 1.4e-120 436.8 316 68.0
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 1.4e-120 436.8 315 65.1
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 2.4e-120 436.0 315 65.4
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 4.1e-120 435.3 315 65.4
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 5.4e-120 434.9 315 65.1
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 9.2e-120 434.1 315 65.4
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 1.2e-119 433.7 315 64.8
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.0e-119 433.0 316 68.0
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 1.0e-118 430.6 316 66.8
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 2.5e-117 426.0 319 64.3
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 4.3e-117 425.2 316 65.2
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 4.3e-117 425.2 315 63.8
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 4.3e-117 425.2 315 64.1
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 4.3e-117 425.2 266 75.2
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 4.3e-117 425.2 320 65.3
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 3.7e-113 412.1 314 64.0
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 1.1e-112 410.6 334 59.6
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 1.1e-112 410.6 317 63.4
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 1.9e-112 409.8 336 61.9
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.4e-112 409.5 316 63.6
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 3.2e-112 409.1 389 54.0
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 9.2e-112 407.5 324 62.7
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.0e-111 406.4 404 53.2
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.1e-109 400.6 314 60.2
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.5e-109 399.4 289 66.8
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 4.3e-109 398.7 314 60.2
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 4.7e-108 395.2 319 61.8
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 8.3e-105 384.4 314 58.6
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 2.3e-102 376.3 243 74.5
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 7.3e-101 371.3 297 61.6
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 1.2e-100 370.5 316 57.0
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 4.7e-100 368.6 332 55.7
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 6.2e-100 368.2 316 59.2
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 3.4e-98 362.5 317 58.0
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 9.9e-98 360.9 321 56.4
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 5.4e-96 355.1 291 60.5
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 6.6e-94 348.2 321 55.8
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 1.2e-92 344.0 307 59.6
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 4.2e-88 328.9 225 69.3
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 4.3e-85 318.9 353 45.3
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 5.6e-85 318.5 304 61.2
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 3.0e-78 296.2 182 78.6
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 8.7e-78 294.7 199 70.9
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 1.1e-72 277.7 185 72.4
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 1.0e-70 271.2 219 61.2
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 5.7e-61 238.8 144 78.5
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 1.6e-60 237.3 165 69.1
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 4.8e-60 235.7 187 61.5
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 7.6e-58 228.4 151 74.2
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 1.0e-49 201.4 147 65.3
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 5.1e-46 189.1 141 61.0
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 1.0e-41 174.9 125 68.8
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 5.3e-35 152.5 96 69.8
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 3.5e-34 149.8 124 59.7
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 2.9e-33 146.7 112 64.3
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 3.3e-29 133.3 93 68.8
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 2.4e-27 127.1 116 55.2
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 5.3e-27 125.9 75 78.7
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 5.3e-27 125.9 105 60.0
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 1.0e-25 121.7 69 76.8
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 2.2e-25 120.6 67 80.6
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 1.9e-24 117.5 119 53.8
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 9.4e-24 115.2 75 69.3
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 1.0e-22 111.7 169 42.6
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 8.3e-20 102.1 58 75.9
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 3.2e-16 90.1 72 61.1
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 1.5e-08 64.7 41 73.2
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 1.9e-08 64.3 50 62.0
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 4.7e-07 59.7 56 53.6
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.3e-06 57.4 80 50.0


User provided reference genes

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