Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006394 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1974.5 1006 100.0
CSS0013285 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1971.4 1006 99.9
Actinidia11569 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1782.7 1004 90.2
vmacro20299 Vaccinium macrocarpon HOM05D004746 ORTHO05D005863 0.0e+00 1728.4 1075 82.9
Atru.chr8.2277 Acer truncatum HOM05D004746 ORTHO05D005863 0.0e+00 1663.7 1012 82.4
Actinidia29088 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1663.7 989 86.8
Ciclev10010971m.g Citrus clementina HOM05D004746 ORTHO05D005863 0.0e+00 1656.3 1010 82.2
Manes.09G106500 Manihot esculenta HOM05D004746 ORTHO05D005863 0.0e+00 1647.5 1012 81.7
Thecc.05G012200 Theobroma cacao HOM05D004746 ORTHO05D005863 0.0e+00 1642.5 1013 81.2
QL07p034923 Quercus lobata HOM05D004746 ORTHO05D005863 0.0e+00 1637.9 1009 80.8
Sopen09g001110 Solanum pennellii HOM05D004746 ORTHO05D005863 0.0e+00 1634.0 1006 80.0
Duzib128G0341 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1632.5 1008 81.1
Cc06_g01090 Coffea canephora HOM05D004746 ORTHO05D005863 0.0e+00 1628.2 1004 81.1
Duzib093G0324 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1625.1 1012 80.4
FvH4_4g00010 Fragaria vesca HOM05D004746 ORTHO05D005863 0.0e+00 1616.3 1011 79.9
Oeu033576.1 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1615.5 1071 76.1
Lsat_1_v5_gn_8_100840 Lactuca sativa HOM05D004746 ORTHO05D005863 0.0e+00 1614.0 1004 80.4
DCAR_018683 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1610.9 1037 77.1
Gorai.002G262500 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1610.1 1012 79.6
Gohir.A01G226580 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1609.7 1015 79.5
Dinv13139 Davidia involucrata HOM05D004746 ORTHO05D005863 0.0e+00 1607.8 912 88.3
Psat3g125960 Pisum sativum HOM05D004746 ORTHO05D005863 0.0e+00 1605.1 1011 79.6
MSTRG.10207 Avicennia marina HOM05D004746 ORTHO05D005863 0.0e+00 1602.8 1006 79.4
Gorai.012G116700 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1599.7 1012 79.2
ECA236G1680 Erigeron canadensis HOM05D004746 ORTHO05D005863 0.0e+00 1598.9 1004 79.8
Gohir.D04G132800 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1598.2 1012 79.2
Migut.J00134 Erythranthe guttata HOM05D004746 ORTHO05D005863 0.0e+00 1597.8 1004 78.9
Gohir.A04G093500 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1596.3 1010 79.1
VMungo1383G1310 Vigna mungo HOM05D004746 ORTHO05D005863 0.0e+00 1592.0 1011 78.7
HanXRQChr12g0383171 Helianthus annuus HOM05D004746 ORTHO05D005863 0.0e+00 1591.2 995 80.4
Phvul.008G095700 Phaseolus vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1591.2 1011 78.8
Glyma.18G203900 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1590.9 1009 79.0
Lj1g0027952 Lotus japonicus HOM05D004746 ORTHO05D005863 0.0e+00 1590.5 1011 78.8
PGR031G3962 Punica granatum HOM05D004746 ORTHO05D005863 0.0e+00 1588.2 1011 78.7
DCAR_015390 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1587.4 1004 78.5
Ca_07663_v3 Cicer arietinum L. HOM05D004746 ORTHO05D005863 0.0e+00 1587.0 1011 79.0
Nn2g10907 Nelumbo nucifera HOM05D004746 ORTHO05D005863 0.0e+00 1582.8 1017 78.7
TPR.G35441 Trifolium pratense HOM05D004746 ORTHO05D005863 0.0e+00 1582.8 1011 78.6
Potri.016G119900 Populus trichocarpa HOM05D004746 ORTHO05D005863 0.0e+00 1580.5 1012 78.2
FAN17G1409 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1578.1 1016 78.2
FAN22G0460 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1577.0 1016 78.2
Medtr7g069460 Medicago truncatula HOM05D004746 ORTHO05D005863 0.0e+00 1572.0 1011 78.2
TWI74G1023 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1569.7 1041 75.4
THA.LOC104823290 Tarenaya hassleriana HOM05D004746 ORTHO05D005863 0.0e+00 1567.4 1008 76.8
Glyma.07G152800 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1565.8 1007 78.0
Eucgr.A00543 Eucalyptus grandis HOM05D004746 ORTHO05D005863 0.0e+00 1564.3 1009 77.2
Oeu063393.2 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1562.0 1142 71.2
Lalb_Chr19g0124371 Lupinus albus HOM05D004746 ORTHO05D005863 0.0e+00 1559.7 1008 77.4
Gohir.D01G216252 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1558.9 1008 78.4
SGA_v2.0_scaffold85G26719 Striga asiatica HOM05D004746 ORTHO05D005863 0.0e+00 1558.5 1065 74.9
arahy.Tifrunner.gnm1.ann1.R9K5QN Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1557.3 1011 77.5
A05p39880 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1556.6 1012 75.9
C05p58920 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1553.9 1012 75.7
BraSC256t45936Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1553.5 1012 75.7
BolC5t34545H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1553.1 1012 75.7
Thhalv10019980m.g Eutrema salsugineum HOM05D004746 ORTHO05D005863 0.0e+00 1550.8 1011 75.8
Aa31LG5G18930 Aethionema arabicum HOM05D004746 ORTHO05D005863 0.0e+00 1548.5 1012 75.3
Sp3g07380 Schrenkiella parvula HOM05D004746 ORTHO05D005863 0.0e+00 1547.7 1012 75.3
PSO339G1342 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1546.9 1009 77.0
AL3G19980 Arabidopsis lyrata HOM05D004746 ORTHO05D005863 0.0e+00 1546.2 1012 75.3
EL10Ac5g12532 Beta vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1544.6 1006 76.8
AT3G08960 Arabidopsis thaliana HOM05D004746 ORTHO05D005863 0.0e+00 1542.7 1012 75.5
PSO801G0820 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1531.9 1009 76.4
arahy.Tifrunner.gnm1.ann1.U1NNDF Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1530.4 1011 76.4
CANSAT56G3938 Cannabis sativa HOM05D004746 ORTHO05D005863 0.0e+00 1528.8 1014 77.4
C03p43890 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1526.5 1013 74.2
BolC3t16657H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1526.5 1013 74.3
Aqoxy7G03079 Aquilegia oxysepala HOM05D004746 ORTHO05D005863 0.0e+00 1524.6 1010 74.7
A03p36250 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1523.8 1013 74.0
BraA03t12796Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1523.8 1013 74.1
CiPaw.09G211600 Carya illinoinensis HOM05D004746 ORTHO05D005863 0.0e+00 1520.4 1010 75.9
Carub.0003s0809 Capsella rubella HOM05D004746 ORTHO05D005863 0.0e+00 1513.8 1012 73.8
Sed0023855 Sechium edule HOM05D004746 ORTHO05D005863 0.0e+00 1502.6 1014 73.3
CsaV3_3G021150 Cucumis sativus L. HOM05D004746 ORTHO05D005863 0.0e+00 1501.9 1014 73.3
Ah.02g115550 Amaranthus hybridus HOM05D004746 ORTHO05D005863 0.0e+00 1497.3 1024 73.6
Cfa017175 Carpinus fangiana HOM05D004746 ORTHO05D005863 0.0e+00 1496.9 912 81.2
MELO3C020253.2 Cucumis melo HOM05D004746 ORTHO05D005863 0.0e+00 1495.7 1014 73.5
Hund10978 Selenicereus undatus HOM05D004746 ORTHO05D005863 0.0e+00 1495.3 1004 75.3
AUR62030473 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1494.6 1012 74.4
TWI77G0319 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1470.3 1012 73.7
Gohir.D01G216126 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1469.1 1027 74.0
Peaxi162Scf01132g00141 Petunia axillaris HOM05D004746 ORTHO05D005863 0.0e+00 1451.4 1012 73.2
Haze_21030 Corylus avellana HOM05D004746 ORTHO05D005863 0.0e+00 1435.6 1030 72.7
AUR62010444 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1433.3 1006 73.2
Sabra16G0115800 Salix brachista HOM05D004746 ORTHO05D005863 0.0e+00 1425.6 1092 68.3
Sc01g0006870 Simmondsia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1401.0 893 77.7
unitig_26.g9084 Utricularia gibba HOM05D004746 ORTHO05D005863 0.0e+00 1380.5 1013 67.9
MBI01_g40022_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 0.0e+00 1364.4 933 73.6
ATR0681G361 Amborella trichopoda HOM05D004746 ORTHO05D005863 0.0e+00 1341.3 1014 65.4
BcaC01g04209 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1340.5 1013 67.4
BcaC05g29630 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1311.2 1002 67.1
CDE08G1427 Ceratophyllum demersum HOM05D004746 ORTHO05D005863 0.0e+00 1302.7 1016 66.1
CARHR083300 Cardamine hirsuta HOM05D004746 ORTHO05D005863 0.0e+00 1280.0 836 74.4
HPP92_001120 Vanilla planifolia HOM05D004746 ORTHO05D005863 0.0e+00 1221.8 1015 62.2
Lj3C949T2 Lonicera japonica HOM05D004746 ORTHO05D005863 0.0e+00 1190.6 817 75.3
Zm00001eb111960 Zea mays HOM05D004746 ORTHO05D005863 0.0e+00 1177.5 964 61.5
Cpa.g.sc120.53 Carica papaya HOM05D004746 ORTHO05D005863 0.0e+00 1161.4 877 69.1
SEGI_16247 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 0.0e+00 1091.6 882 61.2
Nitab4.5_0000195g0230 Nicotiana tabacum HOM05D004746 ORTHO05D005863 0.0e+00 1089.7 721 76.1
TAR633G1894 Trochodendron aralioides HOM05D004746 ORTHO05D005863 3.7e-308 1061.6 611 84.9
Nitab4.5_0009417g0010 Nicotiana tabacum HOM05D004746 ORTHO05D005863 5.2e-302 1041.2 699 75.4
Mapoly0056s0005 Marchantia polymorpha HOM05D004746 ORTHO05D005863 1.6e-298 1029.6 1020 51.4
MD04G1000200 Malus domestica HOM05D004746 ORTHO05D005863 3.0e-297 1025.4 611 80.7
Pp3c14_210 Physcomitrium patens HOM05D004746 ORTHO05D005863 1.3e-289 1000.0 1022 50.9
Pp3c2_22550 Physcomitrium patens HOM05D004746 ORTHO05D005863 9.3e-283 977.2 1016 50.6
Dinv16905 Davidia involucrata HOM05D004746 ORTHO05D005863 1.1e-267 927.2 537 85.7
Prupe.1G000100 Prunus persica HOM05D004746 ORTHO05D005863 1.8e-262 909.8 626 72.4
AagrBONN_evm.TU.Sc2ySwM_362.215 Anthoceros agrestis HOM05D004746 ORTHO05D005863 4.2e-259 898.7 992 48.1
GSVIVG01003938001 Vitis vinifera HOM05D004746 ORTHO05D005863 2.9e-252 875.9 508 85.0
SMO241G0033 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 5.1e-249 865.1 1035 44.9
COL.COLO4_14503 Corchorus olitorius HOM05D004746 ORTHO05D005863 3.4e-245 852.4 508 81.5
FAN12G3124 Fragaria x ananassa HOM05D004746 ORTHO05D005863 1.0e-244 850.9 507 82.1
GSVIVG01003936001 Vitis vinifera HOM05D004746 ORTHO05D005863 9.7e-232 807.7 507 81.1
SMO232G0101 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 1.2e-221 774.2 1019 42.5
Os07g0693400 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 2.7e-205 719.9 1018 43.5
ClCG05G011310 Citrullus lanatus HOM05D004746 ORTHO05D005863 1.6e-178 630.9 484 68.2
MD04G1000400 Malus domestica HOM05D004746 ORTHO05D005863 1.7e-159 567.8 394 73.9
Rhsim05G0217800 Rhododendron simsii HOM05D004746 ORTHO05D005863 7.6e-152 542.3 409 70.2
ClCG05G011270 Citrullus lanatus HOM05D004746 ORTHO05D005863 1.6e-149 534.6 546 53.3
PGSC0003DMG400006259 Solanum tuberosum HOM05D004746 ORTHO05D005863 7.9e-133 479.2 308 77.9
PRCOL_00000669 Prasinoderma coloniale HOM05D004746 ORTHO05D005863 6.9e-129 466.1 1059 31.4
Dinv16904 Davidia involucrata HOM05D004746 ORTHO05D005863 4.5e-128 463.4 463 57.9
HPP92_001053 Vanilla planifolia HOM05D004746 ORTHO05D005863 1.4e-124 451.8 389 60.4
HPP92_001054 Vanilla planifolia HOM05D004746 ORTHO05D005863 3.9e-124 450.3 404 58.7
Glyma.16G097102 Glycine max HOM05D004746 ORTHO05D005863 6.1e-117 426.4 304 70.4
Prupe.1G000300 Prunus persica HOM05D004746 ORTHO05D005863 5.2e-116 423.3 387 59.9
Cre02.g078885 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D005863 1.6e-112 411.8 1162 28.2
Glyma.16G097152 Glycine max HOM05D004746 ORTHO05D005863 8.0e-109 399.4 280 75.4
Psat2g043480 Pisum sativum HOM05D004746 ORTHO05D005863 3.5e-88 330.9 222 77.0
Os03g0292900 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 3.3e-86 324.3 303 53.8
Lsat_1_v5_gn_5_53800 Lactuca sativa HOM05D004746 ORTHO05D005863 8.0e-77 293.1 213 66.2
Lj3A949T17 Lonicera japonica HOM05D004746 ORTHO05D005863 7.0e-73 280.0 216 70.8
CBR_g44564 Chara braunii HOM05D000019 ORTHO05D000048 5.0e-71 273.9 310 44.8
ClCG05G011300 Citrullus lanatus HOM05D004746 ORTHO05D005863 3.7e-66 257.7 141 87.9
CBR_g44557 Chara braunii HOM05D004746 ORTHO05D005863 3.9e-55 221.1 177 62.1
Glyma.16G097051 Glycine max HOM05D004746 ORTHO05D005863 3.0e-47 194.9 126 79.4
CAN.G5.2 Capsicum annuum HOM05D004746 ORTHO05D005863 8.7e-47 193.4 131 77.1
CDE04G0811 Ceratophyllum demersum HOM05D000083 ORTHO05D000196 8.1e-45 186.8 129 73.6
Lsat_1_v5_gn_5_87500 Lactuca sativa HOM05D004746 ORTHO05D005863 8.4e-34 150.2 179 49.2
COL.COLO4_14504 Corchorus olitorius HOM05D004746 ORTHO05D005863 1.5e-30 139.4 88 77.3
CAN.G5.1 Capsicum annuum HOM05D004746 ORTHO05D005863 4.3e-30 137.9 92 71.7
CAN.G610.28 Capsicum annuum HOM05D004746 ORTHO05D005863 1.1e-28 133.3 79 84.8
CBR_g44565 Chara braunii HOM05D004746 ORTHO05D001702 2.4e-28 132.1 188 39.4
Lsat_1_v5_gn_5_55000 Lactuca sativa HOM05D004746 ORTHO05D005863 1.2e-27 129.8 91 63.7
Lj3A949T18 Lonicera japonica HOM05D004746 ORTHO05D005863 2.6e-27 128.6 76 77.6
Psat3g181680 Pisum sativum HOM05D004746 ORTHO05D005863 7.6e-27 127.1 78 80.8
Psat0ss9382g0120 Pisum sativum HOM05D002370 ORTHO05D003878 6.0e-24 117.5 82 72.0
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.9e-22 112.5 120 55.8
MD14G1122700 Malus domestica HOM05D000325 ORTHO05D001655 4.5e-19 101.3 121 47.1
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 4.5e-19 101.3 68 76.5
SalBow5G0496 Salvia bowleyana HOM05D004746 ORTHO05D005863 5.9e-19 100.9 72 63.9
SEGI_11102 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 5.9e-19 100.9 123 47.2
FAN17G0995 Fragaria x ananassa HOM05D004746 ORTHO05D005863 6.1e-16 90.9 56 75.0
CBR_g44559 Chara braunii HOM05D000019 ORTHO05D000353 3.9e-15 88.2 98 46.9
MBI01_g36267_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 7.4e-14 84.0 47 80.9
Cpa.g.sc120.51 Carica papaya HOM05D004746 ORTHO05D005863 3.7e-13 81.6 47 83.0
Cre02.g084650 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D146592 3.4e-11 75.1 557 21.5
CAN.G740.7 Capsicum annuum HOM05D004746 ORTHO05D005863 7.7e-11 73.9 47 78.7
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 3.8e-10 71.6 125 35.2
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 1.4e-09 69.7 125 34.4
THA.LOC104808446 Tarenaya hassleriana HOM05D001046 ORTHO05D005883 4.2e-09 68.2 127 33.9
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 5.5e-09 67.8 125 35.2
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 7.2e-09 67.4 125 34.4
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 9.4e-09 67.0 130 33.8
Lj2g0002950 Lotus japonicus HOM05D001046 ORTHO05D005883 9.4e-09 67.0 129 31.0
Pp3c9_22260 Physcomitrium patens HOM05D002786 ORTHO05D003493 2.7e-08 65.5 168 29.2
Pp3c15_21650 Physcomitrium patens HOM05D002786 ORTHO05D003493 1.0e-07 63.5 173 27.7
Psat0s1759g0080 Pisum sativum HOM05D001955 ORTHO05D001917 1.8e-07 62.8 39 76.9
Actinidia29495 Actinidia chinensis HOM05D004746 ORTHO05D005863 3.9e-07 61.6 70 61.4
AagrBONN_evm.TU.Sc2ySwM_344.2799 Anthoceros agrestis HOM05D002786 ORTHO05D003493 3.9e-07 61.6 167 28.7
Atru.chr11.1438 Acer truncatum HOM05D001046 ORTHO05D005883 5.1e-07 61.2 143 25.9
Atru.chr11.1468 Acer truncatum HOM05D001046 ORTHO05D005883 5.1e-07 61.2 143 25.9
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 3.3e-06 58.5 128 32.8
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 3.3e-06 58.5 128 32.8
BolC7t42425H Brassica oleracea HOM05D001046 ORTHO05D005883 3.3e-06 58.5 128 32.8
GSVIVG01012023001 Vitis vinifera HOM05D001046 ORTHO05D005883 3.3e-06 58.5 137 26.3
Aa31LG7G8840 Aethionema arabicum HOM05D001046 ORTHO05D005883 5.7e-06 57.8 137 30.7
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 5.7e-06 57.8 47 53.2


User provided reference genes

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