Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 6.4e-103 377.5 198 100.0
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.2e-101 373.2 198 99.0
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 5.4e-78 294.7 200 79.0
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 7.1e-78 294.3 198 76.3
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 3.3e-75 285.4 194 74.2
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 5.6e-75 284.6 207 74.9
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 1.6e-74 283.1 203 76.4
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.6e-74 283.1 194 73.7
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.1e-73 280.4 211 73.0
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 2.9e-71 272.3 198 72.7
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 8.4e-71 270.8 165 84.8
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 1.1e-70 270.4 188 71.8
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 4.2e-70 268.5 221 68.3
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 5.5e-70 268.1 201 70.6
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 7.1e-70 267.7 199 72.9
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 7.1e-70 267.7 201 67.7
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.6e-69 266.5 198 68.7
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 4.6e-69 265.0 197 67.5
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.0e-68 263.8 198 72.7
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.3e-68 263.5 194 70.6
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.8e-68 263.1 203 70.0
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 1.8e-68 263.1 195 69.2
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 3.0e-68 262.3 203 70.0
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 3.0e-68 262.3 172 76.7
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 6.7e-68 261.2 195 67.7
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 1.1e-67 260.4 197 72.6
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 1.9e-67 259.6 201 70.6
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 2.5e-67 259.2 206 66.0
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 3.3e-67 258.8 192 66.1
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 5.6e-67 258.1 175 76.0
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 7.4e-67 257.7 194 68.0
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 9.6e-67 257.3 192 66.7
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 9.6e-67 257.3 198 70.2
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 1.3e-66 256.9 181 71.3
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 1.6e-66 256.5 168 71.4
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 3.7e-66 255.4 196 67.9
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 3.7e-66 255.4 170 74.7
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 6.2e-66 254.6 171 73.7
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 6.2e-66 254.6 186 68.8
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 6.2e-66 254.6 198 66.2
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 8.1e-66 254.2 184 71.7
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 8.1e-66 254.2 181 69.6
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 1.1e-65 253.8 201 68.7
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 1.4e-65 253.4 198 68.2
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 1.8e-65 253.1 175 74.9
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 2.4e-65 252.7 201 69.2
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 2.4e-65 252.7 200 68.5
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 3.1e-65 252.3 201 68.2
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 5.3e-65 251.5 207 65.7
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 5.3e-65 251.5 197 67.0
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 6.9e-65 251.1 173 75.1
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 6.9e-65 251.1 220 62.7
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 9.0e-65 250.8 187 69.5
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 1.2e-64 250.4 171 69.6
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 1.5e-64 250.0 171 71.9
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 2.0e-64 249.6 185 70.3
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.6e-64 249.2 194 65.5
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 3.4e-64 248.8 194 63.4
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 4.5e-64 248.4 199 68.3
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 4.5e-64 248.4 189 66.7
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 4.5e-64 248.4 201 67.7
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 7.6e-64 247.7 186 66.7
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 1.7e-63 246.5 186 67.7
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 1.7e-63 246.5 192 64.6
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 2.2e-63 246.1 196 64.8
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 2.9e-63 245.7 194 65.5
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 3.8e-63 245.4 180 68.3
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 6.5e-63 244.6 201 62.2
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 6.5e-63 244.6 192 65.1
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 1.1e-62 243.8 171 70.2
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.1e-62 243.8 198 63.6
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.4e-62 243.4 189 66.1
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 1.9e-62 243.0 186 66.7
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.9e-62 243.0 168 72.6
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 3.2e-62 242.3 202 64.4
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 4.2e-62 241.9 199 62.3
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 4.2e-62 241.9 183 68.3
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 7.1e-62 241.1 170 74.7
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 7.1e-62 241.1 175 71.4
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 7.1e-62 241.1 194 62.9
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 9.3e-62 240.7 186 66.1
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 9.3e-62 240.7 168 69.0
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 1.6e-61 240.0 195 63.6
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 1.6e-61 240.0 195 63.6
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 3.5e-61 238.8 181 70.2
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 3.5e-61 238.8 197 64.0
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 4.6e-61 238.4 191 66.0
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 6.0e-61 238.0 181 66.9
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 6.0e-61 238.0 181 66.9
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 7.9e-61 237.7 181 66.9
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 7.9e-61 237.7 181 66.9
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 7.9e-61 237.7 150 74.0
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 1.0e-60 237.3 210 62.9
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.8e-60 236.5 194 63.4
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 1.8e-60 236.5 192 63.0
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 3.0e-60 235.7 201 59.7
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 6.7e-60 234.6 191 64.9
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 8.7e-60 234.2 198 63.1
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.1e-59 233.8 192 65.6
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 1.9e-59 233.0 192 62.5
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 2.5e-59 232.6 194 67.0
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 4.3e-59 231.9 189 65.1
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 2.1e-58 229.6 164 67.7
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 2.1e-58 229.6 168 69.6
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 2.8e-58 229.2 155 75.5
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 2.8e-58 229.2 155 75.5
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 2.8e-58 229.2 210 56.7
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 3.7e-58 228.8 172 65.1
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 3.7e-58 228.8 168 69.0
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 3.7e-58 228.8 188 60.6
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 4.8e-58 228.4 166 70.5
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 6.3e-58 228.0 170 67.6
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 4.1e-57 225.3 194 60.3
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 2.6e-56 222.6 178 62.9
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 5.9e-56 221.5 178 62.4
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 1.3e-55 220.3 199 61.3
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 8.4e-55 217.6 217 57.1
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 5.5e-54 214.9 167 62.9
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 4.6e-53 211.8 221 54.3
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 1.8e-52 209.9 223 51.1
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.1e-51 207.2 142 70.4
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 2.2e-50 203.0 182 61.0
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 3.1e-49 199.1 196 58.2
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 4.5e-48 195.3 164 63.4
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.6e-45 186.8 163 55.8
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 1.6e-45 186.8 168 56.5
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 4.6e-45 185.3 164 54.9
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 2.5e-43 179.5 189 51.9
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 3.1e-41 172.6 154 60.4
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.5e-35 153.7 100 80.0
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 2.6e-35 152.9 101 73.3
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.3e-35 152.5 165 51.5
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 1.7e-34 150.2 111 69.4
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.8e-34 149.4 168 47.6
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 8.2e-34 147.9 168 47.0
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.4e-33 147.1 196 48.0
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.4e-33 146.4 125 57.6
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.2e-32 144.1 111 66.7
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 1.6e-32 143.7 119 63.9
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 7.7e-32 141.4 111 66.7
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 5.0e-31 138.7 97 69.1
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 1.1e-30 137.5 99 69.7
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 7.2e-30 134.8 99 67.7
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 3.6e-29 132.5 139 51.8
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 9.1e-25 117.9 82 70.7
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 4.2e-22 109.0 170 45.3
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 4.4e-19 99.0 68 67.6
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 9.1e-17 91.3 79 54.4
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 2.5e-14 83.2 135 35.6
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 3.2e-14 82.8 76 60.5
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 6.8e-12 75.1 64 62.5
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 1.3e-10 70.9 49 75.5
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.1e-09 67.8 96 38.5
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 2.4e-09 66.6 61 49.2
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 5.9e-08 62.0 73 53.4
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 7.7e-08 61.6 41 70.7
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 5.0e-07 58.9 59 55.9
Zm00001eb130380 Zea mays HOM05D001942 ORTHO05D008996 3.3e-06 56.2 59 54.2


User provided reference genes

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