Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 2184.1 1087 100.0
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1924.1 1081 87.6
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1922.1 1088 86.9
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1921.7 1088 87.0
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1916.0 1115 84.9
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1903.6 1087 86.0
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1877.4 1085 84.5
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1847.0 1085 83.0
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1778.1 1085 80.7
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1765.4 1089 79.3
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1749.2 1079 78.6
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1734.9 1089 78.4
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1730.7 1088 77.9
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1729.5 1083 78.1
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1727.2 1080 78.5
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1725.7 1087 77.7
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1723.8 1083 77.3
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1720.7 1086 77.7
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1718.0 1091 77.4
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1714.5 1090 77.7
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1713.0 1095 76.3
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1712.6 1097 76.9
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1708.3 1078 77.8
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1704.9 1082 76.4
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1704.5 1086 76.8
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1702.6 1087 76.8
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1701.8 1106 75.8
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1700.3 1081 77.9
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1700.3 995 83.3
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1699.9 1083 77.0
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1697.9 1087 76.2
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1691.0 1083 75.7
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1689.5 1078 76.1
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1689.5 1087 76.2
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1688.7 1087 75.9
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1688.3 1087 76.1
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1687.9 1086 76.3
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1686.8 1088 75.5
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1684.1 1092 77.0
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1684.1 1085 75.7
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1681.8 1083 75.8
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1681.4 1083 75.9
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1681.0 1084 76.2
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1678.7 1087 76.0
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1677.9 1086 75.0
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1677.1 1068 77.6
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1676.4 1076 75.6
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1676.4 1085 75.3
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1673.7 1081 75.4
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1673.3 1085 74.9
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1672.9 1079 75.2
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1670.2 1076 75.2
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1668.7 1085 74.6
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1668.7 1079 75.0
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1667.5 1081 75.7
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1667.1 1082 74.7
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1667.1 1082 74.7
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1663.7 1088 75.8
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1663.3 1090 74.5
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1662.5 1169 71.4
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1659.8 1078 75.5
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1656.3 1169 71.3
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1652.5 1084 75.3
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1651.7 1090 73.6
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1651.0 1078 75.5
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1649.8 1088 74.7
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1649.4 1088 74.5
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1647.9 1109 74.6
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1646.7 1078 74.5
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1645.2 1088 74.4
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1645.2 1087 74.5
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1645.2 1083 74.4
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1643.2 1149 70.9
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1642.5 1088 74.6
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1642.1 1103 72.7
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1639.4 1088 74.1
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1638.6 1108 72.8
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1638.2 1085 73.9
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1630.9 1079 74.2
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1630.5 1079 74.2
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1629.8 1023 77.5
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1627.5 1085 73.6
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1625.5 1079 74.0
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1624.0 1079 74.4
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1616.3 1079 74.1
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1615.1 1086 73.7
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1613.6 1096 73.2
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1611.7 1068 74.7
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1609.0 1079 73.8
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1605.9 1079 73.6
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1605.9 1079 73.6
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1600.5 1079 73.4
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1598.6 1079 73.3
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1597.4 1079 73.2
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1596.6 1079 72.8
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1587.4 1078 70.7
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1580.5 1077 71.7
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1577.8 1088 75.5
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1577.8 1078 71.2
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1577.0 1084 71.3
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1569.7 1109 70.2
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1560.4 1084 71.9
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1558.5 1073 70.6
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1542.3 1088 71.2
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1537.7 1050 71.1
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1528.5 995 75.7
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1525.0 980 75.6
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1502.3 1113 67.1
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1490.7 1076 66.7
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1472.6 1082 69.3
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1425.2 1096 63.5
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1277.7 717 88.3
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1271.5 679 90.9
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1270.4 791 78.3
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1246.9 697 87.5
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1186.0 1086 53.5
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1184.9 751 77.2
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1184.1 1077 53.3
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1163.7 1119 51.3
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1153.3 1083 52.4
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1146.0 1078 52.3
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 3.2e-297 1025.4 837 60.5
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 2.1e-280 969.5 814 61.8
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 6.9e-276 954.5 692 72.0
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 4.8e-269 931.8 613 75.5
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 1.1e-257 894.0 988 53.1
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 2.6e-254 882.9 953 48.2
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 6.3e-245 851.7 503 82.9
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 2.9e-237 826.2 631 65.5
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 1.1e-193 681.4 611 58.6
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 3.1e-167 593.6 447 67.6
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 4.1e-159 566.6 311 85.5
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 6.5e-149 532.7 384 70.8
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.0e-130 472.2 312 73.4
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 4.0e-82 310.8 290 56.6
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 1.5e-76 292.4 244 61.5
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 4.9e-64 250.8 136 80.9
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 9.3e-63 246.5 205 61.0
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 6.7e-53 213.8 138 70.3
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 9.7e-44 183.3 133 67.7
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 1.5e-36 159.5 209 45.5
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 2.4e-34 152.1 88 83.0
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 3.2e-31 141.7 156 50.0
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 3.6e-30 138.3 72 87.5
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 6.7e-29 134.0 108 60.2
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 7.7e-25 120.6 97 62.9
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 4.5e-17 94.7 145 41.4
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 1.0e-13 83.6 47 80.9
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 1.8e-13 82.8 76 47.4
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 2.3e-13 82.4 49 71.4
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 1.6e-09 69.7 33 97.0
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 2.5e-07 62.4 38 76.3
GSVIVG01023118001 Vitis vinifera HOM05D002380 ORTHO05D440244 1.2e-06 60.1 50 64.0
Nn8g39650 Nelumbo nucifera HOM05D000658 ORTHO05D000826 6.1e-06 57.8 349 19.5


User provided reference genes

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