Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006296 Camellia sinensis var. sinensis HOM05D007391 ORTHO05D009446 5.3e-161 571.6 456 100.0
CSS0027290 Camellia sinensis var. sinensis HOM05D007391 ORTHO05D009446 1.6e-149 533.5 466 95.7
CSS0028859 Camellia sinensis var. sinensis HOM05D007391 ORTHO05D009446 4.7e-149 531.9 466 95.3
Rhsim08G0212800 Rhododendron simsii HOM05D007391 ORTHO05D009446 1.4e-105 387.5 468 77.6
Potri.001G202100 Populus trichocarpa HOM05D007391 ORTHO05D009446 2.2e-98 363.6 473 70.6
Sabra01G0159600 Salix brachista HOM05D007391 ORTHO05D009446 1.6e-96 357.5 455 72.3
vmacro18998 Vaccinium macrocarpon HOM05D007391 ORTHO05D009446 4.3e-94 349.4 467 73.0
Nn8g39512 Nelumbo nucifera HOM05D007391 ORTHO05D009446 5.6e-94 349.0 474 66.7
Dinv38125 Davidia involucrata HOM05D007391 ORTHO05D009446 1.2e-93 347.8 445 56.4
CiPaw.01G248400 Carya illinoinensis HOM05D007391 ORTHO05D009446 2.4e-92 343.6 463 73.7
Gohir.A05G123000 Gossypium hirsutum HOM05D007391 ORTHO05D009446 3.1e-92 343.2 469 70.1
Gohir.D05G123900 Gossypium hirsutum HOM05D007391 ORTHO05D009446 6.8e-92 342.0 469 68.7
Glyma.13G365900 Glycine max HOM05D007391 ORTHO05D009446 1.5e-91 340.9 430 79.1
Gorai.009G127900 Gossypium raimondii HOM05D007391 ORTHO05D009446 2.0e-91 340.5 469 68.4
Thecc.06G025300 Theobroma cacao HOM05D007391 ORTHO05D009446 2.6e-91 340.1 474 68.6
RcHm_v2.0_Chr2g0135241 Rosa chinensis HOM05D007391 ORTHO05D009446 3.8e-90 336.3 409 80.7
Hma1.2p1_0017F.1_g011310 Hydrangea macrophylla HOM05D007391 ORTHO05D009446 8.4e-90 335.1 423 70.7
Lj5C73G6 Lonicera japonica HOM05D007391 ORTHO05D009446 1.4e-89 334.3 471 65.8
Duzib235G1403 Durio zibethinus HOM05D007391 ORTHO05D009446 2.4e-89 333.6 470 68.3
FAN02G3910 Fragaria x ananassa HOM05D007391 ORTHO05D009446 2.4e-89 333.6 406 81.0
VMungo1080G1749 Vigna mungo HOM05D007391 ORTHO05D009446 2.4e-89 333.6 407 77.1
Phvul.005G178400 Phaseolus vulgaris HOM05D007391 ORTHO05D009446 3.2e-89 333.2 468 73.9
FAN14G5578 Fragaria x ananassa HOM05D007391 ORTHO05D009446 4.1e-89 332.8 401 80.8
FvH4_6g29640 Fragaria vesca HOM05D007391 ORTHO05D009446 5.4e-89 332.4 409 79.7
Prupe.3G087800 Prunus persica HOM05D007391 ORTHO05D009446 1.7e-87 327.4 402 70.9
Haze_16564 Corylus avellana HOM05D007391 ORTHO05D009446 3.0e-87 326.6 470 66.8
Ciclev10025464m.g Citrus clementina HOM05D007391 ORTHO05D009446 5.1e-87 325.9 471 67.3
Lalb_Chr14g0373831 Lupinus albus HOM05D007391 ORTHO05D009446 6.6e-87 325.5 462 74.2
Dinv30607 Davidia involucrata HOM05D007391 ORTHO05D009446 1.5e-86 324.3 398 79.1
arahy.Tifrunner.gnm1.ann1.9HLX1I Arachis hypogaea HOM05D007391 ORTHO05D009446 2.5e-86 323.6 466 70.6
arahy.Tifrunner.gnm1.ann1.QTUK9J Arachis hypogaea HOM05D007391 ORTHO05D009446 2.5e-86 323.6 466 70.6
Peaxi162Scf00034g00145 Petunia axillaris HOM05D007391 ORTHO05D009446 9.6e-86 321.6 469 70.8
FAN09G3908 Fragaria x ananassa HOM05D007391 ORTHO05D009446 2.1e-85 320.5 401 79.1
Manes.11G057100 Manihot esculenta HOM05D007391 ORTHO05D009446 1.1e-84 318.2 470 71.7
MD17G1212400 Malus domestica HOM05D007391 ORTHO05D009446 5.2e-84 315.8 408 79.2
CAN.G12.8 Capsicum annuum HOM05D007391 ORTHO05D009446 9.0e-84 315.1 465 69.7
Cc08_g02940 Coffea canephora HOM05D007391 ORTHO05D009446 1.5e-83 314.3 476 70.4
DCAR_016270 Daucus carota HOM05D007391 ORTHO05D009446 2.6e-83 313.5 468 65.2
QL05p031418 Quercus lobata HOM05D007391 ORTHO05D009446 5.8e-83 312.4 469 70.4
TWI12G0860 Tripterygium wilfordii HOM05D007391 ORTHO05D009446 2.2e-82 310.5 409 71.9
Cfa001957 Carpinus fangiana HOM05D007391 ORTHO05D001615 2.9e-82 310.1 439 68.8
Solyc12g042760.1 Solanum lycopersicum HOM05D007391 ORTHO05D009446 4.2e-81 306.2 466 70.2
Sopen12g021940 Solanum pennellii HOM05D007391 ORTHO05D009446 4.2e-81 306.2 440 72.7
TPR.G37292 Trifolium pratense HOM05D007391 ORTHO05D001615 2.1e-80 303.9 467 71.3
Nitab4.5_0003157g0010 Nicotiana tabacum HOM05D007391 ORTHO05D009446 6.0e-80 302.4 467 69.8
AUR62011514 Chenopodium quinoa HOM05D007391 ORTHO05D009446 1.3e-79 301.2 462 68.8
AUR62016333 Chenopodium quinoa HOM05D007391 ORTHO05D001615 1.3e-79 301.2 455 69.7
Migut.D01079 Erythranthe guttata HOM05D007391 ORTHO05D009446 2.3e-79 300.4 463 67.8
Nitab4.5_0009497g0020 Nicotiana tabacum HOM05D007391 ORTHO05D009446 5.1e-79 299.3 467 70.2
Medtr2g103940 Medicago truncatula HOM05D007391 ORTHO05D009446 6.6e-79 298.9 466 65.2
Aqoxy7G03657 Aquilegia oxysepala HOM05D007391 ORTHO05D009446 8.7e-79 298.5 464 65.7
Actinidia15759 Actinidia chinensis HOM05D007391 ORTHO05D009446 2.5e-78 297.0 172 84.3
PGR031G3861 Punica granatum HOM05D007391 ORTHO05D009446 5.6e-78 295.8 470 63.4
Lj3g0005617 Lotus japonicus HOM05D007391 ORTHO05D009446 9.6e-78 295.0 444 71.2
FAN05G3463 Fragaria x ananassa HOM05D007391 ORTHO05D009446 1.3e-77 294.7 406 77.6
PSO675G3521 Papaver somniferum HOM05D007391 ORTHO05D009446 8.1e-77 292.0 396 64.4
Psat5g302680 Pisum sativum HOM05D007391 ORTHO05D009446 1.1e-76 291.6 479 61.6
PGSC0003DMG400028627 Solanum tuberosum HOM05D007391 ORTHO05D009446 2.4e-76 290.4 440 67.0
SalBow6G6709 Salvia bowleyana HOM05D007391 ORTHO05D009446 4.0e-76 289.7 461 54.4
SalBow6G7005 Salvia bowleyana HOM05D007391 ORTHO05D009446 4.0e-76 289.7 461 54.2
CANSAT56G1818 Cannabis sativa HOM05D007391 ORTHO05D009446 6.9e-76 288.9 472 60.6
PSO541G2895 Papaver somniferum HOM05D007391 ORTHO05D009446 1.2e-75 288.1 396 70.2
Ah.01g006570 Amaranthus hybridus HOM05D007391 ORTHO05D009446 5.8e-75 285.8 463 67.2
ECA247G3329 Erigeron canadensis HOM05D000038 ORTHO05D003992 1.3e-74 284.6 450 70.7
THA.LOC104812512 Tarenaya hassleriana HOM05D007391 ORTHO05D009446 2.4e-73 280.4 454 64.3
HanXRQChr02g0033491 Helianthus annuus HOM05D007391 ORTHO05D009446 4.2e-73 279.6 464 68.1
COL.COLO4_11942 Corchorus olitorius HOM05D007391 ORTHO05D009446 4.6e-72 276.2 304 63.5
Lsat_1_v5_gn_1_34341 Lactuca sativa HOM05D007391 ORTHO05D009446 6.7e-71 272.3 162 80.2
SGA_v2.0_scaffold117G32353 Striga asiatica HOM05D007391 ORTHO05D009446 2.5e-70 270.4 469 60.6
AT1G80080 Arabidopsis thaliana HOM05D007391 ORTHO05D009446 7.4e-70 268.9 432 70.4
BcaC08g45291 Brassica carinata HOM05D007391 ORTHO05D009446 7.4e-70 268.9 428 67.3
ClCG00G004450 Citrullus lanatus HOM05D007391 ORTHO05D009446 9.6e-70 268.5 407 69.3
ClCG07G012440 Citrullus lanatus HOM05D007391 ORTHO05D009446 9.6e-70 268.5 407 69.3
CARHR074420 Cardamine hirsuta HOM05D007391 ORTHO05D009446 2.1e-69 267.3 407 68.1
AL2G41460 Arabidopsis lyrata HOM05D007391 ORTHO05D009446 2.8e-69 266.9 462 63.6
C06p28930 Brassica napus HOM05D007391 ORTHO05D009446 2.8e-69 266.9 428 67.1
BolC6t38059H Brassica oleracea HOM05D007391 ORTHO05D009446 2.8e-69 266.9 428 67.1
Sp5g35720 Schrenkiella parvula HOM05D007391 ORTHO05D009446 4.8e-69 266.2 467 63.4
CsaV3_4G001720 Cucumis sativus L. HOM05D007391 ORTHO05D009446 6.2e-69 265.8 410 66.8
Cpa.g.sc390.6 Carica papaya HOM05D007391 ORTHO05D009446 9.0e-68 261.9 400 63.8
MELO3C017862.2 Cucumis melo HOM05D007391 ORTHO05D009446 3.4e-67 260.0 409 65.8
Sc12g0008730 Simmondsia chinensis HOM05D007391 ORTHO05D009446 7.6e-67 258.8 469 65.2
Sed0009683 Sechium edule HOM05D007391 ORTHO05D009446 3.2e-65 253.4 451 61.4
Thhalv10019584m.g Eutrema salsugineum HOM05D007391 ORTHO05D009446 1.2e-64 251.5 444 64.2
Aa31LG4G360 Aethionema arabicum HOM05D007391 ORTHO05D009446 2.7e-64 250.4 463 62.0
BcaB02g07296 Brassica carinata HOM05D007391 ORTHO05D009446 2.7e-64 250.4 433 64.9
Ca_01054_v3 Cicer arietinum L. HOM05D000085 ORTHO05D001615 4.6e-64 249.6 170 71.2
A07p26510 Brassica napus HOM05D007391 ORTHO05D009446 1.0e-63 248.4 405 67.4
Actinidia01743 Actinidia chinensis HOM05D007391 ORTHO05D009446 2.3e-63 247.3 473 46.1
BraA07t30294Z Brassica rapa HOM05D007391 ORTHO05D009446 3.0e-63 246.9 405 67.4
HPP92_023155 Vanilla planifolia HOM05D007391 ORTHO05D009446 4.3e-62 243.0 398 60.1
ATR0724G054 Amborella trichopoda HOM05D007391 ORTHO05D009446 1.1e-57 228.4 166 66.3
Os01g0623000 Oryza sativa ssp. japonica HOM05D007391 ORTHO05D009446 7.1e-57 225.7 433 62.1
Zm00001eb159500 Zea mays HOM05D007391 ORTHO05D009446 9.3e-57 225.3 426 61.7
SHI08938 Sapria himalayana HOM05D007391 ORTHO05D009446 3.5e-56 223.4 401 66.3
Eucgr.J03068 Eucalyptus grandis HOM05D007391 ORTHO05D009446 5.3e-52 209.5 465 54.8
SEGI_31210 Sequoiadendron giganteum HOM05D007391 ORTHO05D009446 1.7e-50 204.5 140 68.6
CDE02G2129 Ceratophyllum demersum HOM05D007391 ORTHO05D009446 6.7e-47 192.6 152 62.5
SMO339G0042 Selaginella moellendorffii HOM05D007391 ORTHO05D009446 2.6e-43 180.6 139 63.3
AagrBONN_evm.TU.Sc2ySwM_344.5688 Anthoceros agrestis HOM05D007391 ORTHO05D009446 3.9e-39 166.8 126 62.7
MSTRG.4707 Avicennia marina HOM05D007391 ORTHO05D009446 4.8e-37 159.8 350 58.6
Migut.D01074 Erythranthe guttata HOM05D007391 ORTHO05D009446 3.5e-35 153.7 100 76.0
Pp3c3_3780 Physcomitrium patens HOM05D007391 ORTHO05D009446 7.2e-33 146.0 143 51.7
Hma1.2p1_0355F.1_g133910 Hydrangea macrophylla HOM05D007391 ORTHO05D009446 7.4e-30 136.0 79 79.7
ATR0681G334 Amborella trichopoda HOM05D006470 ORTHO05D007978 4.5e-19 100.1 144 41.0
AagrBONN_evm.TU.Sc2ySwM_344.1086 Anthoceros agrestis HOM05D007391 ORTHO05D004210 1.0e-15 89.0 154 37.7
SMO358G0434 Selaginella moellendorffii HOM05D006470 ORTHO05D007978 5.2e-15 86.7 140 40.7
TAR362G1291 Trochodendron aralioides HOM05D006470 ORTHO05D007978 1.5e-14 85.1 141 34.8
Cpa.g.sc165.30 Carica papaya HOM05D006470 ORTHO05D007978 3.4e-14 84.0 149 31.5
PSO832G0066 Papaver somniferum HOM05D006470 ORTHO05D007978 1.7e-13 81.6 140 36.4
PSO210G2696 Papaver somniferum HOM05D006470 ORTHO05D007978 6.3e-13 79.7 140 35.0
Lsat_1_v5_gn_5_182700 Lactuca sativa HOM05D006470 ORTHO05D007978 8.3e-13 79.3 150 30.7
Psat6g062280 Pisum sativum HOM05D006470 ORTHO05D007978 1.1e-12 79.0 150 34.7
Aqoxy5G00193 Aquilegia oxysepala HOM05D006470 ORTHO05D007978 3.1e-12 77.4 141 31.2
Ca_09663_v3 Cicer arietinum L. HOM05D006470 ORTHO05D007978 7.0e-12 76.3 147 34.7
SEGI_23933 Sequoiadendron giganteum HOM05D006470 ORTHO05D007978 7.0e-12 76.3 137 32.8
Duzib138G0951 Durio zibethinus HOM05D006470 ORTHO05D007978 1.6e-11 75.1 141 32.6
DCAR_012563 Daucus carota HOM05D006470 ORTHO05D007978 2.0e-11 74.7 142 33.1
Lsat_1_v5_gn_9_10681 Lactuca sativa HOM05D006470 ORTHO05D007978 2.0e-11 74.7 145 32.4
Medtr1g069695 Medicago truncatula HOM05D006470 ORTHO05D007978 2.7e-11 74.3 165 30.9
Lj5g0015356 Lotus japonicus HOM05D006470 ORTHO05D007978 4.5e-11 73.6 149 34.9
SalBow4G0507 Salvia bowleyana HOM05D006470 ORTHO05D007978 2.3e-10 71.2 140 35.7
SMO239G0192 Selaginella moellendorffii HOM05D004034 ORTHO05D004210 2.3e-10 71.2 140 31.4
Nitab4.5_0003295g0060 Nicotiana tabacum HOM05D006470 ORTHO05D007978 2.9e-10 70.9 143 30.1
Actinidia11188 Actinidia chinensis HOM05D000176 ORTHO05D000106 8.6e-10 69.3 130 33.1
Glyma.13G125201 Glycine max HOM05D006470 ORTHO05D007978 8.6e-10 69.3 138 34.1
VMungo0720G2572 Vigna mungo HOM05D006470 ORTHO05D007978 8.6e-10 69.3 155 33.5
Nitab4.5_0001945g0030 Nicotiana tabacum HOM05D006470 ORTHO05D007978 2.5e-09 67.8 143 30.1
Peaxi162Scf00415g00003 Petunia axillaris HOM05D006470 ORTHO05D007978 3.3e-09 67.4 140 31.4
Migut.D00451 Erythranthe guttata HOM05D006470 ORTHO05D007978 4.2e-09 67.0 162 30.2
Glyma.10G038800 Glycine max HOM05D006470 ORTHO05D007978 4.2e-09 67.0 144 34.7
Phvul.007G191000 Phaseolus vulgaris HOM05D006470 ORTHO05D007978 4.2e-09 67.0 154 32.5
TWI18G0736 Tripterygium wilfordii HOM05D006470 ORTHO05D007978 4.2e-09 67.0 141 30.5
Os06g0627500 Oryza sativa ssp. japonica HOM05D006470 ORTHO05D007978 5.5e-09 66.6 127 36.2
Manes.02G086800 Manihot esculenta HOM05D004034 ORTHO05D004210 1.2e-08 65.5 156 31.4
Sopen10g003730 Solanum pennellii HOM05D004034 ORTHO05D004210 1.2e-08 65.5 138 32.6
CiPaw.03G267400 Carya illinoinensis HOM05D006470 ORTHO05D007978 1.6e-08 65.1 147 31.3
AUR62025485 Chenopodium quinoa HOM05D006470 ORTHO05D007978 2.1e-08 64.7 143 34.3
PGSC0003DMG400021279 Solanum tuberosum HOM05D004034 ORTHO05D004210 2.8e-08 64.3 138 31.9
SEGI_17997 Sequoiadendron giganteum HOM05D004034 ORTHO05D004210 3.6e-08 63.9 158 31.0
MBI07_g00478_MAGBIO Magnolia biondii HOM05D004034 ORTHO05D004210 6.1e-08 63.2 153 30.1
Lalb_Chr25g0289891 Lupinus albus HOM05D006470 ORTHO05D007978 8.0e-08 62.8 145 29.0
ClCG02G018270 Citrullus lanatus HOM05D004034 ORTHO05D004210 1.0e-07 62.4 147 32.0
Manes.01G128900 Manihot esculenta HOM05D004034 ORTHO05D004210 1.8e-07 61.6 141 33.3
arahy.Tifrunner.gnm1.ann1.NTND9X Arachis hypogaea HOM05D006470 ORTHO05D007978 4.0e-07 60.5 150 32.7
ATR0213G033 Amborella trichopoda HOM05D004034 ORTHO05D004210 6.8e-07 59.7 142 30.3
Gohir.D10G042900 Gossypium hirsutum HOM05D004034 ORTHO05D004210 6.8e-07 59.7 122 35.2
Gorai.011G045500 Gossypium raimondii HOM05D004034 ORTHO05D004210 6.8e-07 59.7 122 35.2
Gohir.A10G042000 Gossypium hirsutum HOM05D004034 ORTHO05D004210 1.2e-06 58.9 122 34.4
Psat6g062240 Pisum sativum HOM05D006470 ORTHO05D007978 4.4e-06 57.0 152 30.3
Migut.F00453 Erythranthe guttata HOM05D001705 ORTHO05D002725 7.5e-06 56.2 120 33.3


User provided reference genes

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