Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.4e-159 566.2 285 100.0
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.5e-153 545.4 280 99.3
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 1.7e-112 409.8 280 74.6
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 8.3e-112 407.5 276 73.6
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 3.1e-111 405.6 275 73.1
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 7.8e-110 401.0 274 72.6
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 1.0e-109 400.6 271 73.4
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 2.9e-109 399.1 277 72.2
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 1.9e-108 396.4 280 70.7
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 3.3e-108 395.6 274 71.9
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 8.9e-106 387.5 274 71.2
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 2.0e-105 386.3 279 70.6
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 7.5e-105 384.4 280 68.9
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 1.9e-103 379.8 273 68.5
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 1.9e-103 379.8 280 68.6
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 2.4e-103 379.4 270 70.7
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 4.1e-103 378.6 272 71.3
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 1.2e-102 377.1 272 69.9
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 1.6e-102 376.7 279 68.8
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 6.0e-102 374.8 272 69.9
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 6.0e-102 374.8 280 69.3
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 1.3e-101 373.6 280 67.1
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 5.0e-101 371.7 276 68.1
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 5.0e-101 371.7 272 69.1
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 8.6e-101 370.9 273 69.6
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 2.5e-100 369.4 280 65.7
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 5.6e-100 368.2 271 68.6
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 7.3e-100 367.9 280 65.7
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 9.5e-100 367.5 282 68.1
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 9.8e-97 357.5 278 64.4
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 9.8e-97 357.5 278 66.5
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 2.2e-96 356.3 276 63.4
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 2.9e-96 355.9 276 62.7
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 4.9e-96 355.1 271 66.4
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.9e-95 353.2 269 65.8
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 4.1e-95 352.1 280 64.3
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 9.2e-95 350.9 271 64.9
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 2.1e-94 349.7 276 63.0
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.7e-94 349.4 275 65.1
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 2.7e-94 349.4 277 62.8
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 2.7e-94 349.4 279 64.2
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 3.5e-94 349.0 278 63.3
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 6.0e-94 348.2 277 66.1
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 6.0e-94 348.2 278 64.4
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 7.8e-94 347.8 280 63.2
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 1.3e-93 347.1 279 63.8
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 1.7e-93 346.7 280 63.2
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.7e-93 346.7 271 64.2
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 6.6e-93 344.7 273 63.7
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 8.6e-93 344.4 277 63.5
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 1.5e-92 343.6 280 65.0
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 1.9e-92 343.2 276 62.3
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 1.9e-92 343.2 278 61.5
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 4.3e-92 342.0 279 62.7
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 5.6e-92 341.7 275 64.4
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 7.3e-92 341.3 285 62.1
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.6e-91 340.1 257 66.9
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 2.8e-91 339.3 272 63.6
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 4.7e-91 338.6 267 66.3
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 1.4e-90 337.0 279 61.3
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 1.8e-90 336.7 280 61.8
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 4.0e-90 335.5 279 61.6
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 5.2e-90 335.1 272 62.1
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 6.8e-90 334.7 279 61.3
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.2e-89 334.0 278 61.5
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 1.2e-89 334.0 328 55.5
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 2.6e-89 332.8 280 60.7
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 4.4e-89 332.0 278 62.6
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 7.5e-89 331.3 284 62.7
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 7.5e-89 331.3 272 63.2
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 4.9e-88 328.6 273 62.3
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 6.4e-88 328.2 275 60.0
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 8.3e-88 327.8 276 60.5
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 1.1e-87 327.4 305 58.4
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 1.4e-87 327.0 280 58.6
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 1.4e-87 327.0 287 59.2
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 1.9e-87 326.6 274 62.8
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 4.1e-87 325.5 280 57.5
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 5.4e-87 325.1 276 58.7
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 5.4e-87 325.1 276 58.3
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 9.2e-87 324.3 284 57.4
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 2.7e-86 322.8 268 61.6
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 3.5e-86 322.4 284 59.2
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 1.7e-85 320.1 273 61.5
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 1.7e-85 320.1 284 59.5
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 3.3e-84 315.8 275 60.4
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 1.6e-83 313.5 266 60.9
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 2.1e-83 313.2 296 56.4
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.8e-83 312.8 286 55.2
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 6.2e-83 311.6 284 58.8
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 3.1e-82 309.3 266 60.2
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 2.6e-81 306.2 195 80.0
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 3.4e-81 305.8 289 57.4
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 3.4e-81 305.8 289 57.4
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 3.4e-81 305.8 289 57.4
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 4.4e-81 305.4 272 55.9
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.3e-80 303.9 255 63.5
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 3.8e-80 302.4 267 56.2
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 6.4e-80 301.6 279 54.5
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 8.4e-80 301.2 272 56.6
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 4.6e-78 295.4 284 55.3
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 1.0e-77 294.3 285 54.7
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 1.3e-77 293.9 277 56.7
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 1.7e-77 293.5 285 55.8
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 3.0e-77 292.7 273 56.4
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 6.6e-77 291.6 328 50.9
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 6.6e-77 291.6 275 56.7
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 1.9e-76 290.0 288 54.2
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 1.9e-76 290.0 288 54.2
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 1.9e-76 290.0 277 54.9
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 1.9e-76 290.0 245 59.2
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 3.3e-76 289.3 291 55.0
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 9.6e-76 287.7 275 54.5
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 1.2e-75 287.3 290 54.1
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 1.6e-75 287.0 287 54.0
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 1.6e-75 287.0 290 54.1
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 1.6e-75 287.0 213 68.5
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 2.1e-75 286.6 290 54.8
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.4e-74 283.9 268 56.0
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 1.8e-74 283.5 283 54.1
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.8e-74 283.5 271 55.4
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 2.4e-74 283.1 201 70.6
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 1.3e-72 277.3 271 55.7
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 3.8e-72 275.8 286 50.7
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 3.8e-72 275.8 286 49.3
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 3.8e-72 275.8 232 64.7
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 4.2e-71 272.3 319 49.2
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 7.1e-71 271.6 286 48.3
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.6e-70 270.4 286 47.9
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.9e-68 263.5 259 56.8
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 9.6e-68 261.2 279 52.3
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 1.3e-67 260.8 267 51.3
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 2.1e-67 260.0 177 74.0
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 2.1e-67 260.0 289 51.2
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 1.8e-66 256.9 272 52.2
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 5.4e-63 245.4 272 50.0
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 6.0e-62 241.9 261 52.1
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 6.9e-58 228.4 256 50.4
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 1.8e-53 213.8 161 67.1
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 1.8e-53 213.8 175 59.4
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 3.9e-53 212.6 229 51.1
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 8.7e-53 211.5 164 60.4
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 8.7e-53 211.5 266 46.2
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 1.9e-52 210.3 265 47.5
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 3.4e-49 199.5 159 67.3
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 4.5e-49 199.1 272 44.1
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 1.6e-46 190.7 233 45.1
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.3e-43 181.0 144 65.3
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 8.2e-43 178.3 144 63.9
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.9e-42 175.3 144 64.6
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.0e-41 173.7 144 63.9
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 5.0e-40 169.1 121 74.4
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 9.4e-39 164.9 146 54.8
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 6.1e-38 162.2 129 57.4
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 4.3e-36 156.0 120 61.7
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.1e-31 141.4 148 55.4
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 1.1e-31 141.4 144 53.5
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 9.4e-31 138.3 126 54.0
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 2.3e-29 133.7 156 51.3
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 5.1e-29 132.5 118 58.5
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.4e-26 123.6 97 62.9
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 9.4e-23 111.7 97 59.8
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 8.8e-21 105.1 91 50.5
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 5.3e-18 95.9 220 32.3
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.9e-15 87.4 131 41.2
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.7e-14 83.6 139 38.8
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 1.0e-13 81.6 60 71.7
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 7.5e-12 75.5 61 57.4
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 1.7e-11 74.3 231 31.2
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 3.7e-11 73.2 137 38.0


User provided reference genes

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