Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.8e-84 315.8 156 100.0
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.7e-74 282.7 146 96.6
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 4.2e-65 251.5 148 83.1
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 3.0e-63 245.4 149 85.2
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 2.4e-60 235.7 146 80.8
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 3.1e-60 235.3 148 78.4
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 5.3e-60 234.6 148 78.4
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 6.9e-60 234.2 148 75.7
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 9.0e-60 233.8 148 77.0
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 2.0e-59 232.6 148 76.4
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.6e-59 232.3 148 76.4
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 4.5e-59 231.5 148 79.1
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 5.8e-59 231.1 148 76.4
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 1.3e-58 229.9 148 77.0
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 1.3e-58 229.9 148 77.7
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.7e-58 229.6 148 76.4
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 3.8e-58 228.4 148 79.1
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 4.9e-58 228.0 148 75.0
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 6.4e-58 227.6 148 77.0
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 1.1e-57 226.9 148 77.0
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 3.2e-57 225.3 148 75.0
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 3.2e-57 225.3 148 76.4
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 4.2e-57 224.9 148 77.7
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 7.1e-57 224.2 148 78.4
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 9.3e-57 223.8 148 75.0
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 2.1e-56 222.6 148 77.0
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 2.1e-56 222.6 158 72.8
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 3.5e-56 221.9 148 74.3
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 6.0e-56 221.1 148 74.3
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 6.0e-56 221.1 148 77.0
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 1.0e-55 220.3 148 74.3
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 1.3e-55 219.9 138 81.2
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 1.8e-55 219.5 143 76.2
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 3.0e-55 218.8 148 73.0
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 3.9e-55 218.4 150 74.0
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 8.7e-55 217.2 147 76.9
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 8.7e-55 217.2 150 71.3
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 1.1e-54 216.9 148 74.3
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 1.1e-54 216.9 140 78.6
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 1.5e-54 216.5 148 71.6
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 1.5e-54 216.5 148 74.3
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 1.5e-54 216.5 148 77.0
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.9e-54 216.1 148 73.6
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 1.9e-54 216.1 148 72.3
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 2.5e-54 215.7 148 73.0
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 2.5e-54 215.7 148 70.3
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 3.3e-54 215.3 148 70.9
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 3.3e-54 215.3 143 77.6
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 4.3e-54 214.9 148 73.0
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 4.3e-54 214.9 148 73.6
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 5.6e-54 214.5 148 77.0
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 9.6e-54 213.8 147 71.4
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 1.3e-53 213.4 148 71.6
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 3.7e-53 211.8 148 71.6
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 6.2e-53 211.1 148 70.9
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 6.2e-53 211.1 140 75.0
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 1.8e-52 209.5 148 70.3
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 3.1e-52 208.8 148 72.3
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 4.0e-52 208.4 148 71.6
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 4.0e-52 208.4 148 71.6
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 5.3e-52 208.0 148 70.9
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 5.3e-52 208.0 148 70.9
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 6.9e-52 207.6 148 70.9
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 6.9e-52 207.6 148 69.6
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 9.0e-52 207.2 149 69.1
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 9.0e-52 207.2 148 70.9
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.2e-51 206.8 149 69.1
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.5e-51 206.5 148 69.6
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.5e-51 206.5 149 68.5
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 2.6e-51 205.7 140 72.9
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 2.6e-51 205.7 147 74.8
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 4.5e-51 204.9 148 70.3
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 4.5e-51 204.9 147 68.7
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 5.8e-51 204.5 148 70.3
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 7.6e-51 204.1 147 72.1
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 9.9e-51 203.8 148 68.9
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 9.9e-51 203.8 140 72.1
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.3e-50 203.4 148 71.6
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 1.7e-50 203.0 149 67.8
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 1.7e-50 203.0 149 70.5
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 1.7e-50 203.0 148 69.6
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 3.8e-50 201.8 149 68.5
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 3.8e-50 201.8 140 72.1
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 4.9e-50 201.4 148 70.3
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 1.1e-49 200.3 149 67.8
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 1.1e-49 200.3 148 71.6
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 1.4e-49 199.9 144 68.8
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 1.9e-49 199.5 154 72.1
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 2.4e-49 199.1 148 67.6
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 7.9e-48 194.1 131 74.0
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 7.9e-48 194.1 147 65.3
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 1.3e-47 193.4 147 66.0
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 1.8e-47 193.0 140 71.4
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 2.3e-47 192.6 147 69.4
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 5.1e-47 191.4 141 68.8
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 8.7e-47 190.7 135 71.9
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 1.5e-46 189.9 148 61.5
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 3.3e-46 188.7 136 71.3
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 4.3e-46 188.3 148 64.9
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 5.6e-46 188.0 148 64.2
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 7.4e-46 187.6 149 66.4
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 2.1e-45 186.0 148 66.9
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 3.7e-45 185.3 144 63.2
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 1.1e-44 183.7 143 68.5
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 5.3e-44 181.4 142 66.9
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 3.8e-42 175.3 142 65.5
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 6.5e-42 174.5 143 65.0
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 5.5e-41 171.4 125 69.6
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 9.3e-41 170.6 188 52.1
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 1.2e-40 170.2 148 62.8
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.1e-40 169.5 148 58.1
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.7e-40 169.1 137 65.0
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 3.5e-40 168.7 151 62.3
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 1.5e-38 163.3 181 56.4
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.4e-36 156.8 148 62.2
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 4.1e-36 155.2 148 61.5
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 6.9e-36 154.5 164 56.1
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 8.5e-34 147.5 140 57.9
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 4.2e-33 145.2 148 54.1
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 1.6e-32 143.3 147 51.7
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 7.9e-32 141.0 232 40.5
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 5.1e-31 138.3 111 64.9
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 8.8e-31 137.5 99 69.7
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 7.4e-30 134.4 115 60.0
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 7.7e-27 124.4 145 49.7
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.0e-26 124.0 180 46.7
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 2.9e-26 122.5 72 84.7
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 1.6e-24 116.7 92 64.1
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 2.6e-22 109.4 145 40.0
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 1.4e-20 103.6 147 37.4
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 5.3e-20 101.7 79 63.3
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 3.5e-19 99.0 129 39.5
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 5.9e-19 98.2 79 62.0
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 4.7e-16 88.6 64 67.2
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 2.0e-14 83.2 68 60.3
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 5.9e-11 71.6 150 37.3
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 6.5e-10 68.2 63 57.1
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 2.5e-09 66.2 86 45.3
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.5e-09 66.2 67 53.7
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 2.3e-07 59.7 43 67.4
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 2.3e-07 59.7 53 58.5
TAR497G0002 Trochodendron aralioides HOM05D005017 ORTHO05D006044 5.2e-07 58.5 31 83.9
AagrBONN_evm.TU.Sc2ySwM_344.1041 Anthoceros agrestis HOM05D025310 ORTHO05D023473 9.7e-06 54.3 139 33.8


User provided reference genes

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