Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006230 Camellia sinensis var. sinensis HOM05D005327 ORTHO05D006655 2.1e-28 128.3 61 100.0
MSTRG.19391 Avicennia marina HOM05D005327 ORTHO05D006655 2.3e-11 71.6 33 100.0
Lj5A713T18 Lonicera japonica HOM05D005327 ORTHO05D006655 2.3e-11 71.6 33 100.0
Peaxi162Scf00889g00111 Petunia axillaris HOM05D005327 ORTHO05D006655 2.3e-11 71.6 33 100.0
Rhsim01G0113000 Rhododendron simsii HOM05D005327 ORTHO05D006655 2.3e-11 71.6 33 100.0
unitig_749.g14193 Utricularia gibba HOM05D005327 ORTHO05D006655 2.3e-11 71.6 33 100.0
SGA_v2.0_scaffold31G12725 Striga asiatica HOM05D005327 ORTHO05D006655 3.9e-11 70.9 46 78.3
Atru.chr7.986 Acer truncatum HOM05D005327 ORTHO05D006655 5.1e-11 70.5 33 97.0
TAR383G0919 Trochodendron aralioides HOM05D005327 ORTHO05D006655 5.1e-11 70.5 33 97.0
Nitab4.5_0004947g0030 Nicotiana tabacum HOM05D005327 ORTHO05D006655 6.7e-11 70.1 32 100.0
DCAR_019096 Daucus carota HOM05D005327 ORTHO05D006655 8.8e-11 69.7 33 97.0
ECA240G0405 Erigeron canadensis HOM05D005327 ORTHO05D006655 8.8e-11 69.7 33 97.0
HanXRQChr03g0067401 Helianthus annuus HOM05D005327 ORTHO05D006655 8.8e-11 69.7 33 97.0
Hma1.2p1_0022F.1_g014810 Hydrangea macrophylla HOM05D005327 ORTHO05D006655 8.8e-11 69.7 33 97.0
Hma1.2p1_0022F.1_g014820 Hydrangea macrophylla HOM05D005327 ORTHO05D006655 8.8e-11 69.7 33 97.0
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 8.8e-11 69.7 33 93.9
Nn8g41033 Nelumbo nucifera HOM05D005327 ORTHO05D006655 1.1e-10 69.3 33 93.9
Haze_19034 Corylus avellana HOM05D005327 ORTHO05D006655 2.0e-10 68.6 33 93.9
vmacro20791 Vaccinium macrocarpon HOM05D005327 ORTHO05D006655 2.0e-10 68.6 35 94.3
vmacro20765 Vaccinium macrocarpon HOM05D005327 ORTHO05D006655 2.6e-10 68.2 34 94.1
CAN.G33.6 Capsicum annuum HOM05D005327 ORTHO05D006655 3.3e-10 67.8 35 91.4
Solyc07g014640.3 Solanum lycopersicum HOM05D005327 ORTHO05D006655 3.3e-10 67.8 35 91.4
Sopen07g005500 Solanum pennellii HOM05D005327 ORTHO05D006655 3.3e-10 67.8 35 91.4
CANSAT01G0668 Cannabis sativa HOM05D005327 ORTHO05D006655 4.4e-10 67.4 33 93.9
Sopen00g011970 Solanum pennellii HOM05D005327 ORTHO05D006655 4.4e-10 67.4 33 97.0
Aa31LG3G3560 Aethionema arabicum HOM05D005327 ORTHO05D006655 5.7e-10 67.0 33 90.9
Migut.J00826 Erythranthe guttata HOM05D005327 ORTHO05D006655 5.7e-10 67.0 33 97.0
Eucgr.C02197 Eucalyptus grandis HOM05D005327 ORTHO05D006655 5.7e-10 67.0 35 91.4
arahy.Tifrunner.gnm1.ann1.BX5CIC Arachis hypogaea HOM05D005327 ORTHO05D006655 7.4e-10 66.6 33 90.9
arahy.Tifrunner.gnm1.ann1.X8NFG9 Arachis hypogaea HOM05D005327 ORTHO05D006655 7.4e-10 66.6 33 90.9
Ca_17407_v3 Cicer arietinum L. HOM05D005327 ORTHO05D006655 7.4e-10 66.6 33 90.9
Glyma.05G222000 Glycine max HOM05D005327 ORTHO05D006655 7.4e-10 66.6 33 90.9
Glyma.08G028600 Glycine max HOM05D005327 ORTHO05D006655 7.4e-10 66.6 33 90.9
TPR.G25461 Trifolium pratense HOM05D005327 ORTHO05D006655 7.4e-10 66.6 33 90.9
ATR0626G140 Amborella trichopoda HOM05D005327 ORTHO05D006655 9.7e-10 66.2 33 90.9
THA.LOC104826954 Tarenaya hassleriana HOM05D005327 ORTHO05D006655 1.3e-09 65.9 33 90.9
TWI34G0155 Tripterygium wilfordii HOM05D005327 ORTHO05D006655 1.3e-09 65.9 33 93.9
Actinidia02486 Actinidia chinensis HOM05D005327 ORTHO05D006655 1.7e-09 65.5 33 90.9
Dinv02614 Davidia involucrata HOM05D005327 ORTHO05D006655 1.7e-09 65.5 33 93.9
Lsat_1_v5_gn_7_59540 Lactuca sativa HOM05D005327 ORTHO05D006655 1.7e-09 65.5 33 93.9
PSO170G4496 Papaver somniferum HOM05D005327 ORTHO05D006655 1.7e-09 65.5 33 93.9
Psat7g020320 Pisum sativum HOM05D005327 ORTHO05D006655 1.7e-09 65.5 50 66.0
Lj4g0024487 Lotus japonicus HOM05D005327 ORTHO05D006655 2.8e-09 64.7 33 87.9
Medtr8g101540 Medicago truncatula HOM05D005327 ORTHO05D006655 2.8e-09 64.7 33 87.9
Phvul.002G303800 Phaseolus vulgaris HOM05D005327 ORTHO05D006655 2.8e-09 64.7 33 87.9
VMungo0251G1981 Vigna mungo HOM05D005327 ORTHO05D006655 2.8e-09 64.7 33 87.9
Cpa.g.sc115.46 Carica papaya HOM05D005327 ORTHO05D006655 3.7e-09 64.3 33 90.9
MD13G1235800 Malus domestica HOM05D005327 ORTHO05D006655 3.7e-09 64.3 33 87.9
MD16G1240500 Malus domestica HOM05D005327 ORTHO05D006655 3.7e-09 64.3 33 87.9
Prupe.1G067200 Prunus persica HOM05D005327 ORTHO05D006655 3.7e-09 64.3 33 87.9
PGR044G0615 Punica granatum HOM05D005327 ORTHO05D006655 3.7e-09 64.3 33 90.9
PGR044G1838 Punica granatum HOM05D005327 ORTHO05D006655 3.7e-09 64.3 33 90.9
PSO063G6174 Papaver somniferum HOM05D005327 ORTHO05D006655 6.3e-09 63.5 46 73.9
GSVIVG01035172001 Vitis vinifera HOM05D005327 ORTHO05D006655 6.3e-09 63.5 33 90.9
Duzib170G0396 Durio zibethinus HOM05D005327 ORTHO05D006655 8.2e-09 63.2 33 87.9
Manes.15G099200 Manihot esculenta HOM05D005327 ORTHO05D006655 8.2e-09 63.2 33 84.8
Thecc.09G189900 Theobroma cacao HOM05D005327 ORTHO05D006655 8.2e-09 63.2 33 87.9
Aqoxy7G02706 Aquilegia oxysepala HOM05D005327 ORTHO05D006655 1.4e-08 62.4 33 87.9
AL3G22170 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 1.4e-08 62.4 33 87.9
Gohir.D05G002100 Gossypium hirsutum HOM05D005327 ORTHO05D006655 1.4e-08 62.4 46 71.7
Gorai.009G002000 Gossypium raimondii HOM05D005327 ORTHO05D006655 1.4e-08 62.4 46 71.7
Sabra06G0052400 Salix brachista HOM05D005327 ORTHO05D006655 1.4e-08 62.4 34 91.2
CiPaw.15G154300 Carya illinoinensis HOM05D005327 ORTHO05D006655 1.8e-08 62.0 33 84.8
ClCG06G013980 Citrullus lanatus HOM05D005327 ORTHO05D006655 1.8e-08 62.0 33 90.9
Thhalv10020814m.g Eutrema salsugineum HOM05D005327 ORTHO05D006655 1.8e-08 62.0 33 87.9
Thhalv10026961m.g Eutrema salsugineum HOM05D005327 ORTHO05D006655 1.8e-08 62.0 33 87.9
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 2.4e-08 61.6 33 87.9
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 2.4e-08 61.6 33 87.9
BolC5t34395H Brassica oleracea HOM05D005327 ORTHO05D006655 2.4e-08 61.6 33 87.9
BraA05t22640Z Brassica rapa HOM05D005327 ORTHO05D006655 2.4e-08 61.6 33 87.9
Carub.0003s0993 Capsella rubella HOM05D005327 ORTHO05D006655 2.4e-08 61.6 33 87.9
CARHR085280 Cardamine hirsuta HOM05D005327 ORTHO05D006655 2.4e-08 61.6 33 87.9
Ciclev10008332m.g Citrus clementina HOM05D005327 ORTHO05D006655 2.4e-08 61.6 33 84.8
Lalb_Chr05g0223671 Lupinus albus HOM05D005327 ORTHO05D006655 2.4e-08 61.6 33 84.8
Lalb_Chr09g0331881 Lupinus albus HOM05D005327 ORTHO05D006655 2.4e-08 61.6 33 84.8
Sp3g09020 Schrenkiella parvula HOM05D005327 ORTHO05D006655 2.4e-08 61.6 33 87.9
CDE06G0639 Ceratophyllum demersum HOM05D005327 ORTHO05D006655 4.1e-08 60.8 33 87.9
MELO3C017398.2 Cucumis melo HOM05D005327 ORTHO05D006655 4.1e-08 60.8 33 87.9
CsaV3_1G032190 Cucumis sativus L. HOM05D005327 ORTHO05D006655 4.1e-08 60.8 33 87.9
Potri.006G070500 Populus trichocarpa HOM05D005327 ORTHO05D006655 4.1e-08 60.8 33 90.9
SHI03089 Sapria himalayana HOM05D005327 ORTHO05D006655 4.1e-08 60.8 34 82.4
Sed0022639 Sechium edule HOM05D005327 ORTHO05D006655 4.1e-08 60.8 33 87.9
Solyc09g031880.3 Solanum lycopersicum HOM05D005327 ORTHO05D006655 4.1e-08 60.8 33 90.9
AT3G10700 Arabidopsis thaliana HOM05D005327 ORTHO05D006655 5.3e-08 60.5 33 84.8
FvH4_4g06430 Fragaria vesca HOM05D005327 ORTHO05D006655 5.3e-08 60.5 33 84.8
FAN07G1666 Fragaria x ananassa HOM05D005327 ORTHO05D006655 5.3e-08 60.5 33 84.8
FAN12G0339 Fragaria x ananassa HOM05D005327 ORTHO05D006655 5.3e-08 60.5 33 84.8
FAN22G1263 Fragaria x ananassa HOM05D005327 ORTHO05D006655 5.3e-08 60.5 33 84.8
RcHm_v2.0_Chr4g0398191 Rosa chinensis HOM05D005327 ORTHO05D006655 5.3e-08 60.5 33 84.8
HPP92_000193 Vanilla planifolia HOM05D005327 ORTHO05D006655 6.9e-08 60.1 33 84.8
QL11p009789 Quercus lobata HOM05D005327 ORTHO05D006655 9.1e-08 59.7 32 87.5
EL10Ac8g18314 Beta vulgaris HOM05D005327 ORTHO05D006655 1.5e-07 58.9 33 84.8
Sc14g0001350 Simmondsia chinensis HOM05D005327 ORTHO05D006655 1.5e-07 58.9 33 81.8
Ah.11g044360 Amaranthus hybridus HOM05D005327 ORTHO05D006655 2.0e-07 58.5 33 84.8
AUR62021329 Chenopodium quinoa HOM05D005327 ORTHO05D006655 2.0e-07 58.5 33 84.8
AUR62033244 Chenopodium quinoa HOM05D005327 ORTHO05D006655 2.0e-07 58.5 33 84.8
Hund09044 Selenicereus undatus HOM05D005327 ORTHO05D006655 2.6e-07 58.2 33 84.8
QL11p009748 Quercus lobata HOM05D005327 ORTHO05D000004 1.0e-06 56.2 30 90.0
AagrBONN_evm.TU.Sc2ySwM_344.300 Anthoceros agrestis HOM05D005327 ORTHO05D006655 2.2e-06 55.1 33 75.8
SEGI_37801 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 2.2e-06 55.1 33 75.8
CBR_g4778 Chara braunii HOM05D005327 ORTHO05D000002 8.5e-06 53.1 33 75.8


User provided reference genes

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