Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 1.2e-253 879.4 432 100.0
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 1.3e-172 610.1 433 70.4
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 8.2e-170 600.9 431 69.8
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 4.6e-165 585.1 432 67.4
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 4.5e-160 568.5 467 63.4
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 7.6e-160 567.8 426 65.3
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 1.1e-158 563.9 440 64.3
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 1.1e-158 563.9 445 64.5
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 7.2e-158 561.2 421 66.5
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 6.7e-156 554.7 424 65.1
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 4.3e-155 552.0 434 64.5
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 4.1e-153 545.4 437 65.9
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 5.3e-153 545.0 384 72.1
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 9.1e-153 544.3 431 64.5
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 1.5e-152 543.5 440 62.0
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 1.5e-152 543.5 432 62.0
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 7.7e-152 541.2 432 61.6
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 7.7e-152 541.2 432 61.6
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 1.3e-151 540.4 424 63.9
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 2.2e-151 539.7 431 63.1
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 5.0e-151 538.5 448 62.1
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 6.5e-151 538.1 475 60.0
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 2.5e-150 536.2 432 61.1
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 3.2e-150 535.8 434 66.8
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 3.6e-149 532.3 433 63.0
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 1.4e-148 530.4 444 61.0
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 2.3e-148 529.6 381 68.5
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 5.1e-148 528.5 438 61.2
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 5.1e-148 528.5 437 61.1
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 2.0e-147 526.6 388 67.8
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 2.0e-147 526.6 435 61.8
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 9.7e-147 524.2 430 61.9
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 8.2e-146 521.2 430 61.2
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 4.1e-145 518.8 437 60.6
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 6.9e-145 518.1 432 61.1
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 1.2e-144 517.3 437 60.4
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 3.4e-144 515.8 437 60.6
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 5.9e-144 515.0 442 59.5
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 7.7e-144 514.6 373 68.6
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.3e-143 513.8 432 60.2
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 1.3e-143 513.8 440 60.0
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 2.2e-143 513.1 445 60.2
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 3.8e-143 512.3 433 58.7
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.4e-142 510.4 432 58.6
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 1.9e-142 510.0 433 58.9
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 1.9e-142 510.0 433 58.4
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 7.2e-142 508.1 438 59.6
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 9.4e-142 507.7 436 59.6
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 3.6e-141 505.8 443 61.9
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 3.6e-141 505.8 440 60.2
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 4.7e-141 505.4 433 59.6
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 1.0e-140 504.2 438 58.9
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 1.4e-140 503.8 437 58.8
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 1.8e-140 503.4 424 60.1
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 8.8e-140 501.1 436 58.7
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 2.0e-139 500.0 441 59.0
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 3.3e-139 499.2 436 59.4
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 4.4e-139 498.8 382 64.7
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 2.2e-138 496.5 387 63.0
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 4.8e-138 495.4 381 66.7
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 6.3e-138 495.0 435 59.1
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 1.0e-135 487.6 440 58.4
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 1.3e-135 487.3 437 57.2
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 5.5e-134 481.9 436 58.7
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 2.7e-133 479.6 456 57.0
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 3.6e-133 479.2 420 59.8
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 4.7e-133 478.8 440 57.7
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 8.0e-133 478.0 440 57.5
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 2.3e-132 476.5 439 57.2
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 4.0e-132 475.7 440 57.3
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 4.0e-132 475.7 440 57.3
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 5.2e-132 475.3 440 57.3
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 2.8e-130 469.5 377 62.6
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 3.7e-130 469.2 421 57.5
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 2.4e-129 466.5 505 49.7
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 7.0e-129 464.9 451 56.1
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 1.2e-128 464.2 380 61.3
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 2.7e-128 463.0 381 60.6
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 1.7e-127 460.3 383 60.6
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 2.9e-127 459.5 379 59.1
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 2.1e-125 453.4 438 54.3
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 2.7e-125 453.0 429 56.2
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 8.8e-124 448.0 429 55.9
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 2.8e-122 443.0 437 54.9
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 3.7e-122 442.6 494 49.8
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 6.3e-122 441.8 438 53.4
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 4.1e-121 439.1 423 51.1
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 2.8e-117 426.4 385 57.1
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 8.0e-117 424.9 382 56.0
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 2.3e-116 423.3 446 52.0
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 1.7e-114 417.2 431 53.4
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 2.2e-114 416.8 403 56.1
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 1.6e-112 410.6 429 52.9
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 1.1e-110 404.4 352 57.4
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 7.0e-105 385.2 448 47.3
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 2.0e-104 383.6 441 48.5
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 2.7e-104 383.3 327 58.7
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 1.7e-103 380.6 450 47.3
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 8.6e-103 378.3 439 47.8
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 1.1e-102 377.9 386 53.4
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 1.6e-101 374.0 433 47.1
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 2.8e-101 373.2 441 47.2
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 2.2e-98 363.6 425 48.9
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 9.2e-97 358.2 434 47.5
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 2.1e-96 357.1 441 47.2
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 1.0e-95 354.8 437 46.5
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 3.9e-95 352.8 441 46.9
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 5.0e-95 352.4 437 46.0
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 3.3e-94 349.7 418 45.7
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 9.5e-94 348.2 352 55.4
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 3.4e-91 339.7 419 43.7
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.2e-90 337.0 458 41.0
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.9e-89 334.0 454 40.3
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.9e-89 334.0 430 42.3
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 1.9e-89 334.0 450 44.2
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 6.0e-88 328.9 297 55.6
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 1.6e-85 320.9 400 45.0
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 5.4e-81 305.8 448 41.7
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 1.7e-79 300.8 265 59.2
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 6.6e-79 298.9 423 39.7
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 3.4e-75 286.6 350 45.7
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.0e-67 260.8 391 37.6
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 2.5e-57 227.3 418 33.5
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 5.5e-57 226.1 288 47.2
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 1.5e-30 138.3 132 51.5
SGA_v2.0_scaffold12G05995 Striga asiatica HOM05D002374 ORTHO05D406151 2.9e-26 124.0 173 43.9
Cpa.g.sc211.21 Carica papaya HOM05D005756 ORTHO05D018916 5.5e-17 93.2 57 80.7
SEGI_18115 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.1e-16 91.3 86 50.0
Hma1.2p1_0545F.1_g176010 Hydrangea macrophylla HOM05D005756 ORTHO05D018916 6.8e-15 86.3 52 84.6
Lj1C795T1 Lonicera japonica HOM05D005756 ORTHO05D018916 2.0e-14 84.7 54 83.3
Dinv21288 Davidia involucrata HOM05D005756 ORTHO05D018916 1.3e-13 82.0 68 63.2
Oeu027645.1 Olea europaea HOM05D005756 ORTHO05D018916 9.1e-12 75.9 52 80.8
DCAR_019685 Daucus carota HOM05D005756 ORTHO05D018916 1.2e-11 75.5 55 70.9
Sc21g0000680 Simmondsia chinensis HOM05D005756 ORTHO05D018916 6.8e-07 59.7 43 67.4


User provided reference genes

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