Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 5.8e-108 394.4 226 100.0
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 5.5e-66 255.0 218 72.5
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.3e-62 243.8 212 74.5
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 4.8e-62 241.9 179 78.8
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.1e-61 240.7 222 65.8
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 6.9e-61 238.0 222 68.0
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.7e-59 233.4 208 71.2
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 4.2e-58 228.8 203 69.5
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 5.5e-58 228.4 217 68.2
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 9.3e-58 227.6 212 66.5
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 9.3e-58 227.6 210 69.5
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 2.7e-57 226.1 171 74.9
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 3.5e-57 225.7 203 71.9
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 3.5e-57 225.7 216 63.4
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 3.5e-57 225.7 219 68.9
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 6.0e-57 224.9 212 70.8
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 7.9e-57 224.6 202 71.3
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 1.0e-56 224.2 215 69.3
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.0e-56 224.2 216 63.0
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.3e-56 223.8 202 69.8
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.3e-56 223.8 202 69.8
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 1.8e-56 223.4 200 64.0
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 1.8e-56 223.4 207 70.5
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 8.7e-56 221.1 175 77.1
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 3.3e-55 219.2 219 66.7
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 1.3e-54 217.2 213 67.6
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 2.8e-54 216.1 209 67.5
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 3.7e-54 215.7 217 60.4
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 1.4e-53 213.8 205 67.3
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 3.1e-53 212.6 201 67.2
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 6.9e-53 211.5 201 70.1
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 9.0e-53 211.1 208 69.2
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 9.0e-53 211.1 211 67.3
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.2e-52 210.7 228 60.5
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.5e-52 210.3 205 67.8
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 3.4e-52 209.1 192 70.8
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 1.0e-51 207.6 228 61.4
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 1.3e-51 207.2 210 66.2
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 6.5e-51 204.9 176 73.9
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 1.1e-50 204.1 206 64.6
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 1.9e-50 203.4 181 72.4
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 2.5e-50 203.0 225 64.0
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 2.5e-50 203.0 206 64.1
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 4.2e-50 202.2 204 66.7
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 7.2e-50 201.4 234 61.1
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 9.3e-50 201.1 226 58.0
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 1.2e-49 200.7 206 64.6
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 1.2e-49 200.7 131 74.0
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 1.2e-49 200.7 208 61.1
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 1.6e-49 200.3 176 73.3
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 1.6e-49 200.3 176 73.3
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.6e-49 200.3 203 66.5
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 2.1e-49 199.9 218 62.8
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 2.7e-49 199.5 132 73.5
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 2.7e-49 199.5 223 59.2
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 7.9e-49 198.0 127 76.4
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 1.8e-48 196.8 227 61.7
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.3e-48 196.4 213 63.4
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 8.7e-48 194.5 130 72.3
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 8.7e-48 194.5 218 63.3
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 8.7e-48 194.5 214 64.0
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 1.1e-47 194.1 226 61.1
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 1.1e-47 194.1 175 68.6
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 1.9e-47 193.4 131 74.8
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 1.9e-47 193.4 126 72.2
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 2.5e-47 193.0 212 62.7
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 2.5e-47 193.0 145 68.3
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 3.3e-47 192.6 200 64.0
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 3.3e-47 192.6 225 59.1
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 5.7e-47 191.8 202 67.8
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 5.7e-47 191.8 219 61.6
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 9.7e-47 191.0 130 71.5
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 1.3e-46 190.7 212 64.2
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 1.3e-46 190.7 212 64.2
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 1.3e-46 190.7 222 56.3
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 1.3e-46 190.7 208 63.9
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 2.2e-46 189.9 133 69.9
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 4.8e-46 188.7 197 60.9
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 4.8e-46 188.7 204 65.7
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 4.8e-46 188.7 206 64.6
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 4.8e-46 188.7 144 66.0
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 6.3e-46 188.3 207 61.4
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 6.3e-46 188.3 233 59.7
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 8.2e-46 188.0 131 71.0
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 8.2e-46 188.0 131 71.0
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 2.4e-45 186.4 132 68.9
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 3.1e-45 186.0 186 64.0
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 4.1e-45 185.7 214 63.6
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 5.3e-45 185.3 237 57.8
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 1.2e-44 184.1 218 57.8
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 1.2e-44 184.1 225 58.7
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 1.5e-44 183.7 129 70.5
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 2.6e-44 183.0 232 58.2
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 3.4e-44 182.6 234 51.3
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.4e-44 182.6 233 58.4
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 4.5e-44 182.2 210 62.9
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 5.9e-44 181.8 181 59.1
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 5.9e-44 181.8 204 57.8
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 1.0e-43 181.0 229 58.5
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 1.3e-43 180.6 214 64.0
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 1.7e-43 180.3 224 58.5
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 2.2e-43 179.9 125 70.4
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 2.2e-43 179.9 211 58.3
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 3.8e-43 179.1 225 60.9
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 8.5e-43 177.9 220 56.4
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 8.5e-43 177.9 136 65.4
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 1.1e-42 177.6 226 60.2
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 1.4e-42 177.2 206 58.7
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 4.2e-42 175.6 208 59.1
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 5.5e-42 175.3 208 60.6
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 5.5e-42 175.3 208 60.6
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 1.2e-41 174.1 220 55.5
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 1.2e-41 174.1 126 70.6
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 1.6e-41 173.7 140 64.3
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 2.1e-41 173.3 237 58.2
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 6.1e-41 171.8 141 62.4
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 7.9e-41 171.4 200 59.0
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 3.9e-40 169.1 195 64.6
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 5.1e-40 168.7 119 70.6
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 6.7e-40 168.3 136 64.0
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 8.8e-40 167.9 131 65.6
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 1.1e-39 167.5 229 60.3
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 1.1e-39 167.5 176 65.9
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 1.1e-39 167.5 122 68.9
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 2.5e-39 166.4 212 58.0
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 2.5e-39 166.4 137 63.5
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 3.3e-39 166.0 230 55.2
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 1.7e-38 163.7 277 50.9
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.1e-37 161.0 140 61.4
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 1.8e-37 160.2 205 51.7
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.8e-37 160.2 215 56.3
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 2.4e-37 159.8 219 54.8
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 6.9e-37 158.3 101 76.2
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 1.5e-36 157.1 216 54.6
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 2.6e-36 156.4 205 56.6
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 3.4e-36 156.0 214 56.5
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 5.9e-36 155.2 225 51.6
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.0e-35 154.5 175 61.1
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 4.2e-34 149.1 214 58.4
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 4.7e-33 145.6 208 57.7
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 6.1e-33 145.2 215 54.0
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.1e-31 141.0 213 56.8
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 3.3e-31 139.4 101 70.3
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 3.3e-31 139.4 229 50.2
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 4.4e-31 139.0 186 55.4
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 9.7e-31 137.9 133 64.7
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 1.3e-30 137.5 291 40.2
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 1.8e-29 133.7 128 54.7
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 4.1e-29 132.5 196 49.5
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 4.1e-29 132.5 215 52.1
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 1.0e-27 127.9 202 52.5
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 2.9e-27 126.3 130 51.5
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 3.2e-26 122.9 189 51.9
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 7.2e-26 121.7 108 56.5
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 1.0e-24 117.9 204 45.6
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 7.5e-23 111.7 194 47.4
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.3e-22 110.9 157 56.7
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 8.2e-22 108.2 202 45.0
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 5.3e-21 105.5 215 49.8
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 7.7e-20 101.7 57 77.2
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 6.5e-19 98.6 110 50.0
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 7.2e-18 95.1 109 49.5
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 8.0e-17 91.7 81 58.0
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 4.4e-15 85.9 64 62.5
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 9.1e-13 78.2 111 56.8
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 1.3e-11 74.3 57 61.4
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 4.9e-06 55.8 40 72.5


User provided reference genes

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