Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006210 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 1.7e-47 192.2 90 100.0
CSS0015180 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 6.4e-34 147.1 91 82.4
CSS0030187 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.3e-14 81.6 51 70.6
CSS0000416 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.1e-12 76.6 51 66.7
CSS0007080 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.1e-12 76.6 51 62.7
CSS0025653 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.5e-11 72.8 51 64.7
CSS0011592 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.8e-11 70.9 47 70.2
CSS0004115 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.2e-08 63.2 44 63.6
CSS0011681 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.5e-08 61.6 51 49.0
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 1.0e-07 60.1 32 84.4
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.3e-07 59.7 32 81.2
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 1.3e-07 59.7 32 81.2
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 1.3e-07 59.7 32 81.2
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 1.3e-07 59.7 32 81.2
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 1.7e-07 59.3 32 81.2
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.7e-07 59.3 32 78.1
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 1.7e-07 59.3 32 81.2
CSS0005407 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.3e-07 58.9 51 47.1
CSS0022804 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.3e-07 58.9 71 40.8
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 3.0e-07 58.5 32 81.2
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 3.0e-07 58.5 32 81.2
CSS0018069 Camellia sinensis var. sinensis HOM05D019333 ORTHO05D000004 3.9e-07 58.2 47 59.6
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 3.9e-07 58.2 32 78.1
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 3.9e-07 58.2 32 78.1
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 5.1e-07 57.8 32 81.2
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 5.1e-07 57.8 32 81.2
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 5.1e-07 57.8 32 81.2
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 5.1e-07 57.8 32 81.2
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 5.1e-07 57.8 32 81.2
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 5.1e-07 57.8 32 81.2
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 6.6e-07 57.4 32 78.1
CSS0030874 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 8.7e-07 57.0 62 45.2
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 8.7e-07 57.0 32 78.1
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 8.7e-07 57.0 32 78.1
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 8.7e-07 57.0 32 78.1
CSS0015726 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.1e-06 56.6 51 45.1
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.1e-06 56.6 32 75.0
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 1.5e-06 56.2 30 83.3
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 1.5e-06 56.2 32 78.1
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 1.5e-06 56.2 32 78.1
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 1.9e-06 55.8 30 83.3
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 1.9e-06 55.8 32 75.0
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 2.5e-06 55.5 32 78.1
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 2.5e-06 55.5 32 78.1
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 3.3e-06 55.1 31 80.6
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 3.3e-06 55.1 31 80.6
CSS0040614 Camellia sinensis var. sinensis HOM05D019333 ORTHO05D000004 3.3e-06 55.1 51 52.9
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 4.3e-06 54.7 32 78.1
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 5.6e-06 54.3 32 75.0
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 7.3e-06 53.9 30 80.0
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 7.3e-06 53.9 30 80.0
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 7.3e-06 53.9 31 77.4
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 7.3e-06 53.9 31 77.4
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 9.6e-06 53.5 30 80.0


User provided reference genes

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