Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.9e-155 552.4 263 100.0
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 6.7e-132 474.2 262 88.2
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 5.6e-131 471.1 262 87.8
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.3e-127 459.9 262 86.6
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 2.5e-110 402.5 231 85.3
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 3.2e-110 402.1 265 75.1
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.9e-107 392.9 265 72.8
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 2.5e-107 392.5 257 76.7
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 3.3e-107 392.1 264 74.2
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 2.8e-106 389.0 265 72.5
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 7.7e-104 380.9 263 68.1
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 7.2e-102 374.4 263 68.8
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.2e-101 373.6 262 69.8
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 3.6e-101 372.1 262 69.5
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 6.1e-101 371.3 262 69.5
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 7.9e-101 370.9 262 68.3
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.4e-100 370.2 263 67.7
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 1.4e-100 370.2 262 69.5
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 3.9e-100 368.6 262 67.9
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 8.8e-100 367.5 262 68.7
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.1e-99 367.1 263 67.7
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 1.5e-99 366.7 262 67.2
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 2.0e-99 366.3 262 67.6
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 2.6e-99 365.9 263 67.7
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 4.4e-99 365.2 262 66.0
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 7.4e-99 364.4 263 66.9
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 7.4e-99 364.4 263 67.7
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 7.4e-99 364.4 262 67.9
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 1.3e-98 363.6 262 66.8
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 1.7e-98 363.2 261 67.8
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 2.2e-98 362.8 262 67.6
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 2.8e-98 362.5 263 67.7
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 3.7e-98 362.1 263 65.0
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 6.3e-98 361.3 262 65.6
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 1.4e-97 360.1 265 65.3
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 1.4e-97 360.1 264 67.4
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 3.1e-97 359.0 262 67.9
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 3.1e-97 359.0 262 67.2
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 3.1e-97 359.0 263 66.2
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 4.1e-97 358.6 262 67.2
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 4.1e-97 358.6 262 67.2
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 9.1e-97 357.5 263 65.4
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 9.1e-97 357.5 262 67.2
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 9.1e-97 357.5 262 65.3
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 1.2e-96 357.1 262 66.0
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 1.2e-96 357.1 253 67.6
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 1.5e-96 356.7 262 64.5
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 2.0e-96 356.3 263 63.9
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 2.0e-96 356.3 263 68.1
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 2.0e-96 356.3 263 68.1
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 1.0e-95 354.0 262 67.2
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 2.2e-95 352.8 262 65.6
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 2.2e-95 352.8 262 64.9
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 2.2e-95 352.8 263 66.5
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 3.8e-95 352.1 263 66.2
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 3.8e-95 352.1 256 65.2
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 5.0e-95 351.7 264 63.6
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 1.1e-94 350.5 263 64.3
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 1.4e-94 350.1 256 65.6
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 2.5e-94 349.4 262 65.3
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 2.5e-94 349.4 261 64.0
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 7.2e-94 347.8 256 64.5
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 1.6e-93 346.7 263 64.6
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 7.9e-93 344.4 268 63.4
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 1.4e-92 343.6 264 64.0
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 2.3e-92 342.8 263 66.2
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 5.2e-92 341.7 264 60.6
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 5.2e-92 341.7 264 62.5
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 8.8e-92 340.9 258 62.8
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 5.7e-91 338.2 262 62.6
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 9.7e-91 337.4 247 66.4
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 1.3e-90 337.0 262 61.8
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 1.7e-90 336.7 262 63.4
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 2.2e-90 336.3 267 61.8
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 2.2e-90 336.3 267 61.8
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 3.7e-90 335.5 265 60.4
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 6.3e-90 334.7 264 62.1
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 8.2e-90 334.3 264 62.1
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 1.4e-89 333.6 263 61.6
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 1.4e-89 333.6 262 62.2
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 3.1e-89 332.4 262 62.2
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 5.3e-89 331.6 263 60.8
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 7.0e-89 331.3 262 61.8
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 1.2e-88 330.5 266 61.3
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 2.0e-88 329.7 262 61.8
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 5.9e-88 328.2 264 62.5
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 7.7e-88 327.8 264 60.6
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.3e-87 327.0 264 63.6
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 2.9e-87 325.9 262 59.9
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 3.8e-87 325.5 265 63.4
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 3.8e-87 325.5 265 63.4
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 1.1e-86 323.9 266 62.4
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 1.5e-86 323.6 256 60.9
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 3.2e-86 322.4 262 59.9
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 5.5e-86 321.6 262 61.8
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 5.5e-86 321.6 266 61.3
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 5.5e-86 321.6 266 61.3
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 7.2e-86 321.2 262 62.2
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 7.2e-86 321.2 264 62.9
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 1.2e-83 313.9 256 60.9
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.2e-83 313.9 255 60.8
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 1.8e-81 306.6 256 60.2
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 2.4e-81 306.2 262 58.4
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 1.0e-79 300.8 250 58.0
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 1.1e-78 297.4 252 57.1
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.9e-78 296.6 264 56.8
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 7.2e-78 294.7 258 59.7
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 3.6e-77 292.4 261 56.3
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.0e-76 290.8 260 57.7
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 4.0e-76 288.9 267 54.7
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 2.6e-75 286.2 256 58.6
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 7.5e-75 284.6 261 55.9
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 8.3e-74 281.2 258 54.3
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 3.1e-73 279.3 260 55.4
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 3.5e-72 275.8 255 54.1
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 1.7e-71 273.5 256 55.1
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 2.3e-71 273.1 261 55.6
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 8.6e-71 271.2 256 55.1
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 8.6e-71 271.2 256 55.1
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 8.6e-71 271.2 257 56.4
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.1e-70 270.8 242 57.9
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 1.5e-70 270.4 256 53.1
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 1.5e-70 270.4 261 55.6
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 1.9e-70 270.0 265 55.1
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 1.9e-70 270.0 256 54.7
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 3.2e-70 269.2 256 53.9
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 5.5e-70 268.5 256 54.7
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 3.6e-69 265.8 256 52.3
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 2.3e-68 263.1 260 56.2
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 1.2e-67 260.8 256 55.5
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 7.5e-67 258.1 245 53.9
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 3.7e-66 255.8 255 53.3
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 4.5e-64 248.8 242 54.1
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 5.9e-64 248.4 255 51.8
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 3.8e-63 245.7 258 51.2
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 1.2e-61 240.7 192 58.3
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 3.4e-59 232.6 269 46.1
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 1.7e-58 230.3 261 48.7
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 2.9e-58 229.6 279 44.8
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 4.9e-58 228.8 261 48.7
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 4.9e-58 228.8 261 49.0
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 7.0e-57 224.9 256 48.4
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 9.2e-57 224.6 273 45.4
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 6.0e-56 221.9 185 57.3
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 2.3e-55 219.9 158 65.2
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 9.5e-54 214.5 183 59.6
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 1.6e-48 197.2 181 57.5
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 2.7e-48 196.4 263 45.2
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 3.5e-48 196.1 287 38.7
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 4.9e-42 175.6 118 71.2
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 1.5e-38 164.1 287 36.6
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 2.1e-32 143.7 158 51.3
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 4.7e-29 132.5 330 29.1
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 3.8e-26 122.9 111 54.1
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 3.2e-25 119.8 326 26.7
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 3.9e-23 112.8 227 35.2
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 3.9e-23 112.8 227 35.7
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 1.9e-22 110.5 264 32.6
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 3.6e-21 106.3 65 72.3
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 4.0e-20 102.8 67 76.1
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 1.2e-11 74.7 193 31.1
BolC2t12147H Brassica oleracea HOM05D003933 ORTHO05D028341 9.3e-09 65.1 58 62.1
BcaC03g13212 Brassica carinata HOM05D003933 ORTHO05D004746 8.7e-07 58.5 135 33.3


User provided reference genes

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