Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006170 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 7.0e-113 410.6 203 100.0
CSS0022548 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 1.4e-108 396.4 203 96.6
CSS0030102 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 4.0e-68 261.9 135 97.8
CSS0021199 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 3.3e-38 162.5 138 68.1
TAR381G0613 Trochodendron aralioides HOM05D000010 ORTHO05D003912 1.1e-25 120.9 151 50.3
TAR625G0135 Trochodendron aralioides HOM05D000010 ORTHO05D003912 1.3e-23 114.0 138 49.3
Nn6g31768 Nelumbo nucifera HOM05D000010 ORTHO05D003912 5.1e-23 112.1 156 44.9
MBI05_g16453_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D003912 1.9e-22 110.2 138 48.6
Actinidia24611 Actinidia chinensis HOM05D000010 ORTHO05D003912 1.6e-21 107.1 143 44.1
CSS0048023 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 3.7e-21 105.9 144 42.4
QL11p054925 Quercus lobata HOM05D000010 ORTHO05D003912 4.8e-21 105.5 144 45.8
Actinidia28739 Actinidia chinensis HOM05D000010 ORTHO05D003912 6.3e-21 105.1 124 56.5
GSVIVG01007194001 Vitis vinifera HOM05D000010 ORTHO05D003912 1.4e-20 104.0 137 50.4
Cfa005342 Carpinus fangiana HOM05D000010 ORTHO05D003912 2.4e-20 103.2 150 44.7
CiPaw.05G090800 Carya illinoinensis HOM05D000010 ORTHO05D003912 2.4e-20 103.2 142 46.5
Haze_02026 Corylus avellana HOM05D000010 ORTHO05D003912 3.1e-20 102.8 150 44.7
Nn5g30910 Nelumbo nucifera HOM05D000010 ORTHO05D003912 1.2e-19 100.9 149 43.6
Actinidia18014 Actinidia chinensis HOM05D000010 ORTHO05D003912 1.5e-19 100.5 146 45.2
Dinv14152 Davidia involucrata HOM05D000010 ORTHO05D003912 2.6e-19 99.8 147 43.5
GSVIVG01023921001 Vitis vinifera HOM05D000010 ORTHO05D003912 4.5e-19 99.0 147 44.9
CiPaw.06G117300 Carya illinoinensis HOM05D000010 ORTHO05D003912 5.0e-18 95.5 150 41.3
Potri.009G141600 Populus trichocarpa HOM05D000010 ORTHO05D003912 8.5e-18 94.7 143 44.8
Peaxi162Scf00875g00111 Petunia axillaris HOM05D000010 ORTHO05D003912 1.1e-17 94.4 148 45.3
vmacro02313 Vaccinium macrocarpon HOM05D000010 ORTHO05D003912 1.9e-17 93.6 168 43.5
Gohir.A12G035000 Gossypium hirsutum HOM05D000010 ORTHO05D003912 2.5e-17 93.2 145 43.4
Lj9A403T64 Lonicera japonica HOM05D000010 ORTHO05D003912 3.2e-17 92.8 157 39.5
CSS0025009 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 9.4e-17 91.3 143 42.7
CSS0026968 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 9.4e-17 91.3 143 42.7
Gohir.D02G230100 Gossypium hirsutum HOM05D000010 ORTHO05D003912 1.2e-16 90.9 137 43.1
Ciclev10029007m.g Citrus clementina HOM05D000010 ORTHO05D003912 1.6e-16 90.5 144 43.8
Duzib052G0724 Durio zibethinus HOM05D000010 ORTHO05D003912 1.6e-16 90.5 149 42.3
Cc00_g14270 Coffea canephora HOM05D000010 ORTHO05D003912 2.1e-16 90.1 144 43.1
Gohir.A03G208600 Gossypium hirsutum HOM05D000010 ORTHO05D003912 2.7e-16 89.7 137 43.1
Gorai.008G038800 Gossypium raimondii HOM05D000010 ORTHO05D003912 2.7e-16 89.7 146 41.8
Duzib132G0483 Durio zibethinus HOM05D000010 ORTHO05D003912 4.6e-16 89.0 146 41.1
Gohir.D12G037700 Gossypium hirsutum HOM05D000010 ORTHO05D003912 4.6e-16 89.0 146 41.8
Gohir.A01G001700 Gossypium hirsutum HOM05D000010 ORTHO05D003912 6.1e-16 88.6 147 40.1
Nitab4.5_0005898g0020 Nicotiana tabacum HOM05D000010 ORTHO05D003912 6.1e-16 88.6 147 39.5
TPR.G21263 Trifolium pratense HOM05D000010 ORTHO05D003912 7.9e-16 88.2 154 40.3
CANSAT25G2645 Cannabis sativa HOM05D000010 ORTHO05D003912 1.0e-15 87.8 149 38.3
Thecc.02G049000 Theobroma cacao HOM05D000010 ORTHO05D003912 1.0e-15 87.8 144 43.1
CAN.G234.20 Capsicum annuum HOM05D000010 ORTHO05D003912 1.4e-15 87.4 155 41.3
Duzib248G0804 Durio zibethinus HOM05D000010 ORTHO05D003912 1.4e-15 87.4 140 43.6
Gorai.005G257800 Gossypium raimondii HOM05D000010 ORTHO05D003912 1.4e-15 87.4 137 42.3
Gorai.002G001900 Gossypium raimondii HOM05D000010 ORTHO05D003912 1.8e-15 87.0 147 38.8
MD05G1130500 Malus domestica HOM05D000010 ORTHO05D003912 3.0e-15 86.3 147 44.2
Psat7g178960 Pisum sativum HOM05D000010 ORTHO05D003912 3.0e-15 86.3 156 39.1
Nitab4.5_0007206g0010 Nicotiana tabacum HOM05D000010 ORTHO05D003912 6.7e-15 85.1 154 40.3
MELO3C013287.2 Cucumis melo HOM05D000010 ORTHO05D003912 8.8e-15 84.7 145 39.3
Potri.004G181900 Populus trichocarpa HOM05D000010 ORTHO05D003912 8.8e-15 84.7 141 46.1
PGSC0003DMG400010870 Solanum tuberosum HOM05D000010 ORTHO05D003912 1.5e-14 84.0 145 41.4
Manes.04G067950 Manihot esculenta HOM05D000010 ORTHO05D003912 2.0e-14 83.6 148 42.6
Potri.005G103200 Populus trichocarpa HOM05D000010 ORTHO05D003912 2.0e-14 83.6 118 46.6
Sabra04G0122600 Salix brachista HOM05D000010 ORTHO05D003912 2.0e-14 83.6 140 43.6
Medtr4g075980 Medicago truncatula HOM05D000010 ORTHO05D003912 2.5e-14 83.2 153 40.5
vmacro17278 Vaccinium macrocarpon HOM05D000010 ORTHO05D003912 2.5e-14 83.2 159 39.0
Solyc10g055760.2 Solanum lycopersicum HOM05D000010 ORTHO05D003912 5.7e-14 82.0 139 41.7
TWI31G0728 Tripterygium wilfordii HOM05D000010 ORTHO05D003912 5.7e-14 82.0 153 42.5
PGR042G1123 Punica granatum HOM05D000010 ORTHO05D003912 7.4e-14 81.6 149 36.2
Sopen10g025590 Solanum pennellii HOM05D000010 ORTHO05D003912 7.4e-14 81.6 134 41.0
Lalb_Chr01g0001191 Lupinus albus HOM05D000010 ORTHO05D003912 9.7e-14 81.3 139 40.3
Prupe.8G174800 Prunus persica HOM05D000010 ORTHO05D003912 9.7e-14 81.3 144 38.2
Sed0001694 Sechium edule HOM05D000010 ORTHO05D003912 9.7e-14 81.3 144 41.7
MD10G1133400 Malus domestica HOM05D000010 ORTHO05D003912 1.3e-13 80.9 147 40.1
Rhsim11G0196000 Rhododendron simsii HOM05D000010 ORTHO05D003912 1.3e-13 80.9 151 41.1
Ca_11240_v3 Cicer arietinum L. HOM05D000010 ORTHO05D003912 2.2e-13 80.1 167 37.7
ClCG02G003600 Citrullus lanatus HOM05D000010 ORTHO05D003912 4.8e-13 79.0 145 39.3
CsaV3_7G001570 Cucumis sativus L. HOM05D000010 ORTHO05D003912 6.3e-13 78.6 145 37.2
VMungo1127G0484 Vigna mungo HOM05D000010 ORTHO05D003912 6.3e-13 78.6 151 40.4
Hma1.2p1_0271F.1_g109130 Hydrangea macrophylla HOM05D000010 ORTHO05D003912 1.1e-12 77.8 164 36.0
Cc00_g14290 Coffea canephora HOM05D000010 ORTHO05D003912 1.4e-12 77.4 148 37.8
Migut.B00028 Erythranthe guttata HOM05D000010 ORTHO05D003912 1.8e-12 77.0 133 40.6
ClCG02G010940 Citrullus lanatus HOM05D000010 ORTHO05D003912 2.4e-12 76.6 149 40.9
Rhsim05G0049700 Rhododendron simsii HOM05D000010 ORTHO05D003912 2.4e-12 76.6 164 36.6
MSTRG.19954 Avicennia marina HOM05D000010 ORTHO05D003912 3.1e-12 76.3 135 43.0
arahy.Tifrunner.gnm1.ann1.TY7WD8 Arachis hypogaea HOM05D000010 ORTHO05D003912 6.9e-12 75.1 167 35.9
Oeu045073.1 Olea europaea HOM05D000010 ORTHO05D003912 6.9e-12 75.1 136 39.7
Phvul.011G024700 Phaseolus vulgaris HOM05D000010 ORTHO05D003912 6.9e-12 75.1 158 38.0
Eucgr.I01494 Eucalyptus grandis HOM05D000010 ORTHO05D003912 9.1e-12 74.7 153 37.3
HanXRQChr17g0543751 Helianthus annuus HOM05D000010 ORTHO05D003912 9.1e-12 74.7 137 42.3
TWI79G1512 Tripterygium wilfordii HOM05D000010 ORTHO05D003912 9.1e-12 74.7 150 39.3
CsaV3_6G012740 Cucumis sativus L. HOM05D000010 ORTHO05D003912 1.2e-11 74.3 157 37.6
DCAR_015676 Daucus carota HOM05D000010 ORTHO05D003912 1.2e-11 74.3 152 37.5
THA.LOC104807387 Tarenaya hassleriana HOM05D000010 ORTHO05D003912 1.2e-11 74.3 156 37.8
Glyma.11G096600 Glycine max HOM05D000010 ORTHO05D003912 1.5e-11 73.9 152 36.8
FAN20G2295 Fragaria x ananassa HOM05D000010 ORTHO05D003912 3.4e-11 72.8 168 34.5
HPP92_020709 Vanilla planifolia HOM05D000010 ORTHO05D003912 4.5e-11 72.4 190 33.2
TWI31G0270 Tripterygium wilfordii HOM05D000010 ORTHO05D003912 5.9e-11 72.0 160 38.1
HPP92_014995 Vanilla planifolia HOM05D000010 ORTHO05D003912 5.9e-11 72.0 166 36.1
Aqoxy6G01788 Aquilegia oxysepala HOM05D000010 ORTHO05D003912 7.7e-11 71.6 147 38.1
Lalb_Chr19g0139581 Lupinus albus HOM05D000010 ORTHO05D003912 7.7e-11 71.6 149 36.9
FAN15G3200 Fragaria x ananassa HOM05D000010 ORTHO05D003912 1.0e-10 71.2 166 35.5
Lj3g0004138 Lotus japonicus HOM05D000010 ORTHO05D003912 1.0e-10 71.2 164 34.1
RcHm_v2.0_Chr6g0279801 Rosa chinensis HOM05D000010 ORTHO05D003912 1.3e-10 70.9 164 39.6
Sed0006043 Sechium edule HOM05D000010 ORTHO05D003912 1.3e-10 70.9 151 35.8
Atru.chr5.3491 Acer truncatum HOM05D000010 ORTHO05D003912 1.7e-10 70.5 161 37.9
Os06g0726300 Oryza sativa ssp. japonica HOM05D000010 ORTHO05D003912 1.7e-10 70.5 142 35.9
FvH4_2g16180 Fragaria vesca HOM05D000010 ORTHO05D003912 2.2e-10 70.1 162 36.4
Glyma.12G022700 Glycine max HOM05D000010 ORTHO05D003912 2.2e-10 70.1 151 35.8
Sed0004560 Sechium edule HOM05D000010 ORTHO05D003912 2.2e-10 70.1 155 34.8
THA.LOC104804309 Tarenaya hassleriana HOM05D000010 ORTHO05D003912 2.2e-10 70.1 148 39.9
Cc09_g10560 Coffea canephora HOM05D000010 ORTHO05D003912 2.9e-10 69.7 152 36.8
FAN24G0208 Fragaria x ananassa HOM05D000010 ORTHO05D003912 2.9e-10 69.7 162 36.4
HanXRQChr15g0476501 Helianthus annuus HOM05D000010 ORTHO05D003912 2.9e-10 69.7 138 40.6
Nitab4.5_0000188g0310 Nicotiana tabacum HOM05D000010 ORTHO05D003912 3.8e-10 69.3 129 34.9
Oeu006128.2 Olea europaea HOM05D000010 ORTHO05D003912 3.8e-10 69.3 142 39.4
PGR142G0486 Punica granatum HOM05D000010 ORTHO05D003912 5.0e-10 68.9 136 40.4
HPP92_003505 Vanilla planifolia HOM05D000010 ORTHO05D003912 5.0e-10 68.9 166 33.7
HPP92_001736 Vanilla planifolia HOM05D000010 ORTHO05D003912 6.5e-10 68.6 173 33.5
FAN24G1211 Fragaria x ananassa HOM05D000010 ORTHO05D003912 8.5e-10 68.2 162 36.4
ATR0661G198 Amborella trichopoda HOM05D000010 ORTHO05D003912 1.1e-09 67.8 171 34.5
A03p46240 Brassica napus HOM05D000010 ORTHO05D003912 1.4e-09 67.4 152 34.2
Cpa.g.sc320.2 Carica papaya HOM05D000010 ORTHO05D003912 1.4e-09 67.4 149 38.9
SalBow1G8485 Salvia bowleyana HOM05D000010 ORTHO05D003912 1.4e-09 67.4 127 37.0
Dinv41894 Davidia involucrata HOM05D000656 ORTHO05D000871 1.9e-09 67.0 75 49.3
FAN27G0729 Fragaria x ananassa HOM05D000010 ORTHO05D003912 1.9e-09 67.0 167 34.1
Aa31LG8G14240 Aethionema arabicum HOM05D000010 ORTHO05D003912 3.2e-09 66.2 143 38.5
BcaC04g22993 Brassica carinata HOM05D000010 ORTHO05D003912 3.2e-09 66.2 150 34.7
A09p11190 Brassica napus HOM05D000010 ORTHO05D003912 3.2e-09 66.2 150 34.7
C09p13240 Brassica napus HOM05D000010 ORTHO05D003912 3.2e-09 66.2 150 34.7
BolC9t54217H Brassica oleracea HOM05D000010 ORTHO05D003912 3.2e-09 66.2 150 34.7
BraA09t36762Z Brassica rapa HOM05D000010 ORTHO05D003912 3.2e-09 66.2 150 34.7
CARHR107380 Cardamine hirsuta HOM05D000010 ORTHO05D003912 3.2e-09 66.2 141 39.7
CAN.G23.1 Capsicum annuum HOM05D000010 ORTHO05D003912 5.5e-09 65.5 130 34.6
AL3G49880 Arabidopsis lyrata HOM05D000010 ORTHO05D003912 7.2e-09 65.1 152 38.8
BcaB07g31744 Brassica carinata HOM05D000010 ORTHO05D003912 7.2e-09 65.1 154 34.4
Manes.11G106050 Manihot esculenta HOM05D000010 ORTHO05D003912 7.2e-09 65.1 157 36.3
Zm00001eb272040 Zea mays HOM05D000010 ORTHO05D003912 7.2e-09 65.1 155 34.2
ECA234G2461 Erigeron canadensis HOM05D000010 ORTHO05D003912 9.4e-09 64.7 193 31.6
Lsat_1_v5_gn_4_71141 Lactuca sativa HOM05D000010 ORTHO05D003912 9.4e-09 64.7 198 30.8
AT2G17040 Arabidopsis thaliana HOM05D000010 ORTHO05D003912 1.2e-08 64.3 144 41.0
PSO675G3759 Papaver somniferum HOM05D000010 ORTHO05D003912 1.6e-08 63.9 195 29.7
HPP92_014556 Vanilla planifolia HOM05D000010 ORTHO05D003912 1.6e-08 63.9 169 34.9
EL10Ac9g21279 Beta vulgaris HOM05D000010 ORTHO05D003912 2.1e-08 63.5 149 36.9
Oeu024274.1 Olea europaea HOM05D000010 ORTHO05D003912 2.7e-08 63.2 135 32.6
PSO541G6436 Papaver somniferum HOM05D000010 ORTHO05D003912 3.6e-08 62.8 193 30.1
Gohir.D01G001300 Gossypium hirsutum HOM05D000010 ORTHO05D003912 4.7e-08 62.4 73 49.3
arahy.Tifrunner.gnm1.ann1.A1VWSL Arachis hypogaea HOM05D000010 ORTHO05D003912 7.9e-08 61.6 167 31.7
Carub.0003s3097 Capsella rubella HOM05D000010 ORTHO05D003912 1.0e-07 61.2 148 37.2
Sp3g30340 Schrenkiella parvula HOM05D000010 ORTHO05D003912 1.0e-07 61.2 153 34.0
BcaC01g02963 Brassica carinata HOM05D000010 ORTHO05D003912 1.4e-07 60.8 150 32.0
C03p57860 Brassica napus HOM05D000010 ORTHO05D003912 1.4e-07 60.8 150 32.0
BolC3t18057H Brassica oleracea HOM05D000010 ORTHO05D003912 1.4e-07 60.8 150 32.0
BolC7t41066H Brassica oleracea HOM05D000010 ORTHO05D003912 1.4e-07 60.8 153 31.4
PGSC0003DMG400008677 Solanum tuberosum HOM05D000010 ORTHO05D003912 1.4e-07 60.8 121 36.4
DCAR_006295 Daucus carota HOM05D000010 ORTHO05D003912 1.8e-07 60.5 86 47.7
BcaC06g36216 Brassica carinata HOM05D000010 ORTHO05D003912 2.3e-07 60.1 154 31.8
C07p06450 Brassica napus HOM05D000010 ORTHO05D003912 2.3e-07 60.1 154 31.8
BcaB03g16440 Brassica carinata HOM05D000010 ORTHO05D003912 3.0e-07 59.7 157 32.5
Sabra05G0085400 Salix brachista HOM05D000010 ORTHO05D003912 6.7e-07 58.5 131 37.4
SGA_v2.0_scaffold207G41949 Striga asiatica HOM05D000010 ORTHO05D003912 6.7e-07 58.5 105 38.1
HanXRQChr05g0140421 Helianthus annuus HOM05D000010 ORTHO05D003912 2.0e-06 57.0 75 44.0
Nitab4.5_0001310g0040 Nicotiana tabacum HOM05D000010 ORTHO05D003912 2.0e-06 57.0 138 30.4
Sc08g0002540 Simmondsia chinensis HOM05D000010 ORTHO05D003912 3.3e-06 56.2 137 35.8
Hund00340 Selenicereus undatus HOM05D000010 ORTHO05D003912 5.7e-06 55.5 153 34.0
Hund28333 Selenicereus undatus HOM05D000010 ORTHO05D003912 5.7e-06 55.5 153 34.0
Ah.01g023540 Amaranthus hybridus HOM05D000010 ORTHO05D003912 7.4e-06 55.1 160 31.9
A07p04050 Brassica napus HOM05D000010 ORTHO05D003912 9.7e-06 54.7 154 31.2
BraA07t28197Z Brassica rapa HOM05D000010 ORTHO05D003912 9.7e-06 54.7 154 31.2


User provided reference genes

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