Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 3.7e-100 368.2 187 100.0
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 3.1e-91 338.6 187 90.9
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 5.3e-83 311.2 187 82.9
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 9.0e-83 310.5 187 81.8
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 6.7e-78 294.3 187 78.1
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 2.0e-77 292.7 168 91.1
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 1.1e-75 287.0 185 77.3
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 6.5e-73 277.7 184 75.0
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 9.4e-72 273.9 186 74.2
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 1.2e-71 273.5 186 73.7
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 1.2e-71 273.5 185 71.9
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 3.6e-71 271.9 185 72.4
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 6.1e-71 271.2 185 71.4
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 7.9e-71 270.8 185 71.9
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 1.0e-70 270.4 185 72.4
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 5.1e-70 268.1 186 71.5
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 5.1e-70 268.1 186 70.4
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 1.1e-69 266.9 189 70.4
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 1.1e-69 266.9 186 71.5
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 1.1e-69 266.9 187 72.7
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 2.8e-68 262.3 189 69.3
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 3.7e-68 261.9 184 70.1
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 3.7e-68 261.9 184 71.7
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 8.2e-68 260.8 189 69.8
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 8.2e-68 260.8 185 68.6
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 1.4e-67 260.0 189 68.8
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 1.4e-67 260.0 189 68.8
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 1.8e-67 259.6 187 69.0
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 2.4e-67 259.2 182 68.7
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 2.4e-67 259.2 187 70.1
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 9.1e-67 257.3 187 66.8
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 1.2e-66 256.9 189 67.2
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.5e-66 256.5 187 68.4
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 4.5e-66 255.0 187 69.0
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 2.9e-65 252.3 187 66.8
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 3.8e-65 251.9 187 67.4
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 1.1e-64 250.4 185 67.6
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 1.5e-64 250.0 187 68.4
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 1.9e-64 249.6 187 68.4
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 1.9e-64 249.6 187 68.4
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 1.9e-64 249.6 187 68.4
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 4.2e-64 248.4 187 66.3
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 4.2e-64 248.4 187 66.8
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 4.2e-64 248.4 187 65.8
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 5.5e-64 248.1 186 67.7
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 5.5e-64 248.1 180 68.3
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 7.2e-64 247.7 187 67.9
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 7.2e-64 247.7 187 66.3
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 9.4e-64 247.3 187 64.7
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 9.4e-64 247.3 187 70.1
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 1.6e-63 246.5 187 70.1
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 2.1e-63 246.1 186 67.7
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 2.7e-63 245.7 187 65.8
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 6.1e-63 244.6 187 65.8
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 1.0e-62 243.8 187 67.9
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 1.8e-62 243.0 187 66.8
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 2.3e-62 242.7 187 66.3
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 3.0e-62 242.3 183 68.9
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 3.0e-62 242.3 193 63.7
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 4.0e-62 241.9 187 64.7
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 4.0e-62 241.9 187 67.9
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 5.2e-62 241.5 183 67.2
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 8.8e-62 240.7 183 66.7
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 8.8e-62 240.7 183 66.7
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 1.1e-61 240.4 187 63.6
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 1.1e-61 240.4 187 65.8
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 1.1e-61 240.4 187 65.2
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 1.5e-61 240.0 183 68.3
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 2.0e-61 239.6 183 67.8
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 2.0e-61 239.6 183 66.7
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 2.6e-61 239.2 187 65.8
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 3.3e-61 238.8 180 68.9
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 5.7e-61 238.0 187 65.8
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 5.7e-61 238.0 172 69.2
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 5.7e-61 238.0 187 65.8
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.3e-60 236.9 187 65.2
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 1.3e-60 236.9 187 65.8
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 1.7e-60 236.5 185 62.7
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.7e-60 236.5 187 65.2
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 2.2e-60 236.1 182 67.6
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 2.8e-60 235.7 186 62.4
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 4.8e-60 235.0 183 67.2
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 8.2e-60 234.2 187 63.1
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 1.1e-59 233.8 184 62.5
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 1.1e-59 233.8 184 62.5
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 1.4e-59 233.4 182 67.6
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 2.4e-59 232.6 187 61.0
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 2.4e-59 232.6 183 65.6
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 3.1e-59 232.3 182 67.0
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 3.1e-59 232.3 183 65.6
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 3.1e-59 232.3 189 65.6
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 5.3e-59 231.5 183 63.9
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 7.0e-59 231.1 187 63.6
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 9.1e-59 230.7 187 64.2
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 1.2e-58 230.3 150 74.0
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 1.6e-58 229.9 179 65.9
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 2.6e-58 229.2 203 60.6
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 4.5e-58 228.4 183 61.7
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 5.9e-58 228.0 187 61.0
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 7.7e-58 227.6 187 64.7
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 1.0e-57 227.3 183 61.2
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 1.1e-56 223.8 183 62.3
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.5e-56 223.4 149 76.5
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 3.2e-56 222.2 184 61.4
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 4.2e-56 221.9 184 60.9
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 2.1e-55 219.5 184 61.4
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 4.7e-55 218.4 183 62.3
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 1.0e-54 217.2 187 62.6
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 3.0e-54 215.7 166 69.3
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 4.0e-54 215.3 170 65.3
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 1.5e-53 213.4 210 55.2
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 9.8e-53 210.7 187 62.0
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 1.3e-52 210.3 150 72.0
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 1.7e-52 209.9 166 65.1
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 2.8e-52 209.1 184 56.5
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 2.7e-47 192.6 182 53.3
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.0e-46 190.7 183 51.4
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.4e-46 190.3 183 50.8
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 3.4e-45 185.7 198 53.5
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 9.8e-45 184.1 184 54.9
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.1e-43 180.6 148 62.8
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.7e-41 173.3 183 50.3
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 3.8e-41 172.2 183 49.2
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 5.6e-40 168.3 145 63.4
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 2.8e-39 166.0 187 54.5
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.7e-36 156.8 98 81.6
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 3.7e-36 155.6 185 41.6
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 4.3e-32 142.1 148 54.1
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 4.7e-31 138.7 101 68.3
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 6.2e-31 138.3 113 65.5
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 4.4e-29 132.1 154 48.7
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 3.5e-26 122.5 104 58.7
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 4.3e-24 115.5 119 51.3
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 2.2e-20 103.2 168 36.3
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 1.9e-19 100.1 73 64.4
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 2.4e-19 99.8 80 66.2
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 9.2e-19 97.8 72 65.3
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 1.2e-18 97.4 186 29.0
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 7.8e-18 94.7 63 68.3
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 6.6e-17 91.7 83 63.9
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 2.2e-12 76.6 175 29.7
vmacro01419 Vaccinium macrocarpon HOM05D005619 ORTHO05D006696 6.6e-09 65.1 68 55.9


User provided reference genes

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