Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006159 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 4.7e-52 207.6 106 100.0
Nitab4.5_0003615g0040 Nicotiana tabacum HOM05D003357 ORTHO05D003779 1.4e-48 196.1 106 88.7
Nitab4.5_0003071g0080 Nicotiana tabacum HOM05D003357 ORTHO05D003779 4.1e-48 194.5 106 88.7
Cc02_g22170 Coffea canephora HOM05D003357 ORTHO05D003779 9.1e-48 193.4 106 88.7
CSS0046968 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 1.6e-47 192.6 106 90.6
Nitab4.5_0009907g0030 Nicotiana tabacum HOM05D003357 ORTHO05D003779 1.6e-47 192.6 106 87.7
Actinidia39063 Actinidia chinensis HOM05D003357 ORTHO05D003779 3.5e-47 191.4 106 88.7
CAN.G1352.13 Capsicum annuum HOM05D003357 ORTHO05D003779 5.9e-47 190.7 106 86.8
Dinv19344 Davidia involucrata HOM05D003357 ORTHO05D003779 2.2e-46 188.7 106 87.7
Peaxi162Scf00011g00031 Petunia axillaris HOM05D003357 ORTHO05D003779 2.9e-46 188.3 106 84.9
GSVIVG01029690001 Vitis vinifera HOM05D003357 ORTHO05D003779 2.9e-46 188.3 106 84.9
Peaxi162Scf00003g03752 Petunia axillaris HOM05D003357 ORTHO05D003779 5.0e-46 187.6 104 85.6
Solyc01g104580.3 Solanum lycopersicum HOM05D003357 ORTHO05D003779 5.0e-46 187.6 106 85.8
Sopen01g047090 Solanum pennellii HOM05D003357 ORTHO05D003779 5.0e-46 187.6 106 85.8
PGSC0003DMG400029777 Solanum tuberosum HOM05D003357 ORTHO05D003779 5.0e-46 187.6 106 85.8
Hma1.2p1_0704F.1_g206850 Hydrangea macrophylla HOM05D003357 ORTHO05D003779 1.1e-45 186.4 106 84.9
Nitab4.5_0000078g0390 Nicotiana tabacum HOM05D003357 ORTHO05D003779 1.9e-45 185.7 118 78.8
Dinv24254 Davidia involucrata HOM05D003357 ORTHO05D003779 2.5e-45 185.3 106 84.9
TAR197G0001 Trochodendron aralioides HOM05D003357 ORTHO05D003779 4.2e-45 184.5 106 83.0
Lsat_1_v5_gn_7_78341 Lactuca sativa HOM05D003357 ORTHO05D003779 7.2e-45 183.7 106 84.9
Lj9A312T45 Lonicera japonica HOM05D003357 ORTHO05D003779 9.5e-45 183.3 106 83.0
CiPaw.06G149700 Carya illinoinensis HOM05D003357 ORTHO05D003779 1.2e-44 183.0 106 85.8
Cfa005555 Carpinus fangiana HOM05D003357 ORTHO05D003779 2.1e-44 182.2 106 84.0
QL11p019146 Quercus lobata HOM05D003357 ORTHO05D003779 4.7e-44 181.0 105 82.9
CiPaw.05G042100 Carya illinoinensis HOM05D003357 ORTHO05D003779 8.0e-44 180.3 106 83.0
MD08G1227400 Malus domestica HOM05D003357 ORTHO05D003779 1.0e-43 179.9 106 82.1
HanXRQChr16g0514191 Helianthus annuus HOM05D003357 ORTHO05D003779 1.4e-43 179.5 106 83.0
RcHm_v2.0_Chr7g0223311 Rosa chinensis HOM05D003357 ORTHO05D003779 1.4e-43 179.5 106 82.1
SalBow5G0183 Salvia bowleyana HOM05D003357 ORTHO05D003779 1.4e-43 179.5 106 82.1
Sc02g0001800 Simmondsia chinensis HOM05D003357 ORTHO05D003779 1.4e-43 179.5 106 83.0
Thecc.02G042200 Theobroma cacao HOM05D003357 ORTHO05D003779 1.4e-43 179.5 106 82.1
HanXRQChr10g0300241 Helianthus annuus HOM05D003357 ORTHO05D003779 1.8e-43 179.1 106 81.1
FvH4_5g29780 Fragaria vesca HOM05D003357 ORTHO05D003779 3.0e-43 178.3 106 81.1
FAN08G0651 Fragaria x ananassa HOM05D003357 ORTHO05D003779 3.0e-43 178.3 106 81.1
FAN18G4337 Fragaria x ananassa HOM05D003357 ORTHO05D003779 3.0e-43 178.3 106 81.1
DCAR_021821 Daucus carota HOM05D003357 ORTHO05D003779 5.2e-43 177.6 106 82.1
TWI14G1244 Tripterygium wilfordii HOM05D003357 ORTHO05D003779 5.2e-43 177.6 106 81.1
Duzib248G1129 Durio zibethinus HOM05D003357 ORTHO05D003779 6.8e-43 177.2 106 81.1
Psat1g219760 Pisum sativum HOM05D003357 ORTHO05D003779 6.8e-43 177.2 106 80.2
Prupe.1G564500 Prunus persica HOM05D003357 ORTHO05D003779 6.8e-43 177.2 106 80.2
FAN13G0157 Fragaria x ananassa HOM05D003357 ORTHO05D003779 8.8e-43 176.8 106 80.2
MD15G1419800 Malus domestica HOM05D003357 ORTHO05D003779 8.8e-43 176.8 106 80.2
Potri.003G021934 Populus trichocarpa HOM05D003357 ORTHO05D003779 8.8e-43 176.8 106 79.2
MSTRG.16542 Avicennia marina HOM05D003357 ORTHO05D003779 1.5e-42 176.0 106 78.3
Ciclev10002130m.g Citrus clementina HOM05D003357 ORTHO05D003779 1.5e-42 176.0 106 79.2
Lsat_1_v5_gn_5_107641 Lactuca sativa HOM05D003357 ORTHO05D003779 1.5e-42 176.0 106 78.3
Lsat_1_v5_gn_9_116201 Lactuca sativa HOM05D003357 ORTHO05D003779 1.5e-42 176.0 106 79.2
unitig_26.g9557 Utricularia gibba HOM05D003357 ORTHO05D003779 2.6e-42 175.3 106 79.2
arahy.Tifrunner.gnm1.ann1.11V3F3 Arachis hypogaea HOM05D003357 ORTHO05D003779 3.4e-42 174.9 106 79.2
arahy.Tifrunner.gnm1.ann1.I2CYKQ Arachis hypogaea HOM05D003357 ORTHO05D003779 3.4e-42 174.9 106 79.2
CANSAT11G1252 Cannabis sativa HOM05D003357 ORTHO05D003779 3.4e-42 174.9 106 78.3
SGA_v2.0_scaffold1G00338 Striga asiatica HOM05D003357 ORTHO05D003779 4.4e-42 174.5 115 76.5
ClCG00G003530 Citrullus lanatus HOM05D003357 ORTHO05D003779 5.7e-42 174.1 106 78.3
ClCG09G014530 Citrullus lanatus HOM05D003357 ORTHO05D003779 5.7e-42 174.1 106 78.3
MELO3C012699.2 Cucumis melo HOM05D003357 ORTHO05D003779 5.7e-42 174.1 106 78.3
CsaV3_7G022210 Cucumis sativus L. HOM05D003357 ORTHO05D003779 5.7e-42 174.1 106 78.3
ECA234G2199 Erigeron canadensis HOM05D003357 ORTHO05D003779 5.7e-42 174.1 106 79.2
PGR142G3651 Punica granatum HOM05D003357 ORTHO05D003779 5.7e-42 174.1 106 78.3
TWI23G0276 Tripterygium wilfordii HOM05D003357 ORTHO05D003779 5.7e-42 174.1 106 80.2
unitig_749.g13510 Utricularia gibba HOM05D000349 ORTHO05D003779 5.7e-42 174.1 106 77.4
Cpa.g.sc2.31 Carica papaya HOM05D003357 ORTHO05D003779 9.8e-42 173.3 106 77.4
Ca_29933_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 1.3e-41 172.9 106 79.2
Manes.07G012600 Manihot esculenta HOM05D003357 ORTHO05D003779 1.3e-41 172.9 106 78.3
TPR.G19716 Trifolium pratense HOM05D003357 ORTHO05D003779 1.3e-41 172.9 106 77.4
Eucgr.I02708 Eucalyptus grandis HOM05D003357 ORTHO05D003779 1.7e-41 172.6 106 78.3
Gohir.A01G001200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 2.2e-41 172.2 106 78.3
Gohir.D01G000900 Gossypium hirsutum HOM05D003357 ORTHO05D003779 2.2e-41 172.2 106 78.3
Gohir.D02G232200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 2.2e-41 172.2 106 77.4
Gorai.002G001400 Gossypium raimondii HOM05D003357 ORTHO05D003779 2.2e-41 172.2 106 78.3
Gorai.005G260000 Gossypium raimondii HOM05D003357 ORTHO05D003779 2.2e-41 172.2 106 77.4
Sed0024772 Sechium edule HOM05D003357 ORTHO05D003779 3.7e-41 171.4 106 77.4
Lj6g0024688 Lotus japonicus HOM05D003357 ORTHO05D003779 6.3e-41 170.6 106 74.5
Atru.chr6.1007 Acer truncatum HOM05D003357 ORTHO05D003779 8.3e-41 170.2 106 76.4
ClCG05G009890 Citrullus lanatus HOM05D003357 ORTHO05D003779 8.3e-41 170.2 106 75.5
CsaV3_3G018700 Cucumis sativus L. HOM05D003357 ORTHO05D003779 8.3e-41 170.2 106 75.5
Gohir.A03G210600 Gossypium hirsutum HOM05D003357 ORTHO05D003779 1.1e-40 169.9 106 75.5
HanXRQChr03g0066581 Helianthus annuus HOM05D003357 ORTHO05D003779 1.1e-40 169.9 106 79.2
HanXRQChr11g0337561 Helianthus annuus HOM05D003357 ORTHO05D003779 1.1e-40 169.9 106 77.4
Glyma.15G048800 Glycine max HOM05D003357 ORTHO05D003779 1.4e-40 169.5 106 75.5
Migut.B00658 Erythranthe guttata HOM05D003357 ORTHO05D003779 1.8e-40 169.1 106 73.6
Glyma.08G184000 Glycine max HOM05D003357 ORTHO05D003779 1.8e-40 169.1 106 75.5
VMungo0540G1809 Vigna mungo HOM05D003357 ORTHO05D003779 2.4e-40 168.7 106 75.5
Potri.001G208000 Populus trichocarpa HOM05D003357 ORTHO05D003779 3.1e-40 168.3 106 76.4
PSO017G4220 Papaver somniferum HOM05D003357 ORTHO05D003779 4.1e-40 167.9 106 75.5
Manes.10G133000 Manihot esculenta HOM05D003357 ORTHO05D003779 5.4e-40 167.5 106 75.5
Phvul.006G211600 Phaseolus vulgaris HOM05D003357 ORTHO05D003779 5.4e-40 167.5 106 74.5
Sed0004213 Sechium edule HOM05D003357 ORTHO05D003779 7.0e-40 167.2 106 74.5
THA.LOC104805045 Tarenaya hassleriana HOM05D003357 ORTHO05D003779 7.0e-40 167.2 106 75.5
Medtr2g007830 Medicago truncatula HOM05D003357 ORTHO05D003779 1.6e-39 166.0 106 73.6
Thhalv10001009m.g Eutrema salsugineum HOM05D003357 ORTHO05D003779 2.0e-39 165.6 106 76.4
AL5G10030 Arabidopsis lyrata HOM05D003357 ORTHO05D003779 3.5e-39 164.9 106 75.5
Lalb_Chr20g0123351 Lupinus albus HOM05D003357 ORTHO05D003779 3.5e-39 164.9 106 73.6
MBI06_g01047_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 3.5e-39 164.9 106 76.4
Migut.N01027 Erythranthe guttata HOM05D003357 ORTHO05D003779 4.5e-39 164.5 106 75.5
Aa31LG2G8800 Aethionema arabicum HOM05D003357 ORTHO05D003779 7.8e-39 163.7 106 73.6
AT2G01080 Arabidopsis thaliana HOM05D003357 ORTHO05D003779 7.8e-39 163.7 106 74.5
Carub.0005s0007 Capsella rubella HOM05D003357 ORTHO05D003779 7.8e-39 163.7 106 74.5
Duzib052G0578 Durio zibethinus HOM05D003357 ORTHO05D003779 7.8e-39 163.7 106 75.5
Aqoxy5G02480 Aquilegia oxysepala HOM05D003357 ORTHO05D003779 1.3e-38 162.9 106 74.5
CARHR143630 Cardamine hirsuta HOM05D003357 ORTHO05D003779 1.3e-38 162.9 106 73.6
ECA236G2437 Erigeron canadensis HOM05D003357 ORTHO05D003779 3.8e-38 161.4 106 72.6
Sp2g12550 Schrenkiella parvula HOM05D003357 ORTHO05D003779 8.6e-38 160.2 106 73.6
BcaC06g34220 Brassica carinata HOM05D003357 ORTHO05D003779 1.5e-37 159.5 106 71.7
A06p44690 Brassica napus HOM05D003357 ORTHO05D003779 1.5e-37 159.5 106 71.7
BolC7t43694H Brassica oleracea HOM05D003357 ORTHO05D003779 1.5e-37 159.5 106 71.7
BraA06t27342Z Brassica rapa HOM05D003357 ORTHO05D003779 1.5e-37 159.5 106 71.7
A02p31650 Brassica napus HOM05D003357 ORTHO05D003779 1.9e-37 159.1 106 72.6
C02p48990 Brassica napus HOM05D003357 ORTHO05D003779 1.9e-37 159.1 106 72.6
BolC2t10993H Brassica oleracea HOM05D003357 ORTHO05D003779 1.9e-37 159.1 106 72.6
BraA02t08168Z Brassica rapa HOM05D003357 ORTHO05D003779 1.9e-37 159.1 106 72.6
SGA_v2.0_scaffold110G31275 Striga asiatica HOM05D003357 ORTHO05D003779 3.3e-37 158.3 126 65.1
CDE06G1413 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 4.3e-37 157.9 104 71.2
CDE06G2726 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 4.3e-37 157.9 104 70.2
CSS0044852 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 1.0e-35 153.3 79 100.0
Os03g0262700 Oryza sativa ssp. japonica HOM05D003357 ORTHO05D003779 1.5e-34 149.4 106 67.0
HPP92_011155 Vanilla planifolia HOM05D003357 ORTHO05D003779 3.4e-34 148.3 106 67.9
Zm00001eb011530 Zea mays HOM05D003357 ORTHO05D003779 3.4e-34 148.3 106 66.0
arahy.Tifrunner.gnm1.ann1.S31UIX Arachis hypogaea HOM05D003357 ORTHO05D003779 1.3e-33 146.4 107 68.2
Rhsim11G0132500 Rhododendron simsii HOM05D003357 ORTHO05D003779 1.1e-32 143.3 80 87.5
vmacro01792 Vaccinium macrocarpon HOM05D003357 ORTHO05D003779 1.8e-32 142.5 78 89.7
Lj5C246T11 Lonicera japonica HOM05D003357 ORTHO05D003779 3.5e-31 138.3 78 87.2
Oeu041075.1 Olea europaea HOM05D003357 ORTHO05D003779 1.0e-30 136.7 79 83.5
MSTRG.5244 Avicennia marina HOM05D003357 ORTHO05D003779 1.7e-30 136.0 78 83.3
Lj6g0024689 Lotus japonicus HOM05D003357 ORTHO05D003779 3.0e-30 135.2 96 66.7
ATR0121G007 Amborella trichopoda HOM05D003357 ORTHO05D003779 3.9e-30 134.8 106 62.3
SEGI_11822 Sequoiadendron giganteum HOM05D003357 ORTHO05D003779 3.3e-29 131.7 104 59.6
Haze_01610 Corylus avellana HOM05D003357 ORTHO05D003779 5.6e-29 131.0 79 83.5
Haze_01612 Corylus avellana HOM05D003357 ORTHO05D003779 5.6e-29 131.0 79 83.5
Glyma.08G077900 Glycine max HOM05D003357 ORTHO05D003779 5.6e-29 131.0 104 60.6
SalBow5G2536 Salvia bowleyana HOM05D003357 ORTHO05D003779 2.1e-28 129.0 77 81.8
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 6.2e-28 127.5 79 78.5
MELO3C031692.2 Cucumis melo HOM05D003357 ORTHO05D003779 1.8e-27 125.9 78 75.6
HPP92_027206 Vanilla planifolia HOM05D003357 ORTHO05D003779 8.9e-27 123.6 106 60.4
Ca_00094_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 1.2e-26 123.2 78 76.9
Peaxi162Scf00018g00081 Petunia axillaris HOM05D003357 ORTHO05D003779 2.0e-26 122.5 77 75.3
Nn5g27960 Nelumbo nucifera HOM05D003357 ORTHO05D003779 4.4e-26 121.3 79 77.2
Sabra03G0013900 Salix brachista HOM05D003357 ORTHO05D003779 1.7e-25 119.4 80 71.2
PSO170G2411 Papaver somniferum HOM05D003357 ORTHO05D003779 2.2e-25 119.0 77 74.0
EL10Ac9g22198 Beta vulgaris HOM05D003357 ORTHO05D003779 5.4e-24 114.4 69 78.3
Manes.12G086500 Manihot esculenta HOM05D003357 ORTHO05D003779 9.2e-24 113.6 79 69.6
Manes.10G036100 Manihot esculenta HOM05D003357 ORTHO05D003779 4.6e-23 111.3 79 67.1
ECA240G3987 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.7e-22 109.4 70 75.7
Manes.01G111900 Manihot esculenta HOM05D003357 ORTHO05D003779 1.7e-22 109.4 78 66.7
Manes.03G085403 Manihot esculenta HOM05D003357 ORTHO05D003779 3.0e-22 108.6 76 68.4
Manes.18G118000 Manihot esculenta HOM05D003357 ORTHO05D003779 1.9e-21 105.9 88 62.5
Manes.03G114750 Manihot esculenta HOM05D003357 ORTHO05D003779 7.3e-21 104.0 76 68.4
arahy.Tifrunner.gnm1.ann1.GBW8AP Arachis hypogaea HOM05D003357 ORTHO05D003779 2.8e-20 102.1 79 67.1
SHI16610 Sapria himalayana HOM05D003357 ORTHO05D003779 4.7e-20 101.3 104 51.0
Zm00001eb398130 Zea mays HOM05D003357 ORTHO05D003779 4.7e-20 101.3 77 62.3
HanXRQChr03g0066491 Helianthus annuus HOM05D003357 ORTHO05D003779 1.8e-19 99.4 74 67.6
HanXRQChr15g0467891 Helianthus annuus HOM05D003357 ORTHO05D003779 3.1e-19 98.6 79 65.8
MD15G1282800 Malus domestica HOM05D003357 ORTHO05D003779 4.1e-16 88.2 69 63.8
SEGI_24152 Sequoiadendron giganteum HOM05D003357 ORTHO05D003779 7.1e-16 87.4 101 40.6
HanXRQChr03g0073191 Helianthus annuus HOM05D003357 ORTHO05D003779 1.7e-14 82.8 60 65.0
SMO164G0048 Selaginella moellendorffii HOM05D003357 ORTHO05D003779 1.7e-14 82.8 104 41.3
AagrBONN_evm.TU.Sc2ySwM_228.3124 Anthoceros agrestis HOM05D003357 ORTHO05D003779 2.1e-12 75.9 99 36.4
Manes.17G088150 Manihot esculenta HOM05D003357 ORTHO05D003779 2.3e-11 72.4 50 66.0
AUR62027010 Chenopodium quinoa HOM05D003357 ORTHO05D003779 6.8e-11 70.9 47 72.3
AUR62030850 Chenopodium quinoa HOM05D000445 ORTHO05D000314 6.8e-11 70.9 47 72.3
Manes.07G113500 Manihot esculenta HOM05D003357 ORTHO05D003779 1.5e-10 69.7 50 64.0
MBI13_g01678_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 5.4e-08 61.2 83 36.1
Dinv37830 Davidia involucrata HOM05D003357 ORTHO05D003779 7.1e-08 60.8 91 36.3
ATR0317G009 Amborella trichopoda HOM05D003357 ORTHO05D003779 9.2e-08 60.5 90 33.3
Hma1.2p1_0090F.1_g045910 Hydrangea macrophylla HOM05D003357 ORTHO05D003779 3.5e-07 58.5 94 37.2
Migut.I01123 Erythranthe guttata HOM05D003357 ORTHO05D003779 1.0e-06 57.0 89 36.0
arahy.Tifrunner.gnm1.ann1.PAK5F5 Arachis hypogaea HOM05D003988 ORTHO05D014448 3.0e-06 55.5 39 64.1
arahy.Tifrunner.gnm1.ann1.W7NNEU Arachis hypogaea HOM05D003988 ORTHO05D014448 3.0e-06 55.5 39 64.1
Ciclev10026388m.g Citrus clementina HOM05D003357 ORTHO05D003779 6.6e-06 54.3 87 33.3


User provided reference genes

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