Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006147 Camellia sinensis var. sinensis HOM05D007242 ORTHO05D009089 4.9e-111 404.4 199 100.0
CSS0024550 Camellia sinensis var. sinensis HOM05D007242 ORTHO05D009089 3.8e-39 165.6 98 87.8
Hma1.2p1_0268F.1_g107710 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 3.8e-23 112.5 98 61.2
Rhsim08G0035000 Rhododendron simsii HOM05D007242 ORTHO05D009089 1.9e-22 110.2 95 60.0
Hma1.2p1_0939F.1_g239400 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 1.2e-21 107.5 98 58.2
Lj2A917T62 Lonicera japonica HOM05D007242 ORTHO05D009089 8.9e-20 101.3 170 39.4
MD02G1154900 Malus domestica HOM05D007242 ORTHO05D009089 8.9e-20 101.3 229 34.5
Dinv26797 Davidia involucrata HOM05D007242 ORTHO05D009089 1.5e-19 100.5 96 58.3
Atru.chr3.510 Acer truncatum HOM05D007242 ORTHO05D009089 5.7e-19 98.6 273 31.1
Lj2C896T5 Lonicera japonica HOM05D007242 ORTHO05D009089 5.7e-19 98.6 170 38.8
GSVIVG01019029001 Vitis vinifera HOM05D007242 ORTHO05D009089 4.9e-18 95.5 98 53.1
Medtr8g107230 Medicago truncatula HOM05D007242 ORTHO05D009089 5.9e-16 88.6 96 45.8
Aqoxy6G01016 Aquilegia oxysepala HOM05D007242 ORTHO05D009089 7.8e-16 88.2 129 37.2
Glyma.05G246000 Glycine max HOM05D007242 ORTHO05D009089 3.0e-15 86.3 135 33.3
TAR381G0682 Trochodendron aralioides HOM05D007242 ORTHO05D009089 3.0e-15 86.3 96 47.9
CANSAT35G0651 Cannabis sativa HOM05D007242 ORTHO05D009089 1.5e-14 84.0 98 50.0
CAN.G1204.3 Capsicum annuum HOM05D007242 ORTHO05D009089 2.5e-14 83.2 167 32.9
COL.COLO4_04840 Corchorus olitorius HOM05D007242 ORTHO05D009089 2.5e-14 83.2 192 32.3
TPR.G15492 Trifolium pratense HOM05D007242 ORTHO05D009089 3.3e-14 82.8 135 33.3
Potri.005G127500 Populus trichocarpa HOM05D007242 ORTHO05D009089 7.3e-14 81.6 128 39.1
SalBow1G2223 Salvia bowleyana HOM05D007242 ORTHO05D009089 7.3e-14 81.6 97 44.3
VMungo0251G2211 Vigna mungo HOM05D007242 ORTHO05D009089 7.3e-14 81.6 135 33.3
QL12p024714 Quercus lobata HOM05D007242 ORTHO05D009089 1.2e-13 80.9 94 47.9
Ciclev10027297m.g Citrus clementina HOM05D007242 ORTHO05D009089 1.6e-13 80.5 158 39.2
Oeu038867.1 Olea europaea HOM05D007242 ORTHO05D009089 2.1e-13 80.1 96 45.8
Prupe.7G148400 Prunus persica HOM05D007242 ORTHO05D009089 2.1e-13 80.1 98 45.9
Haze_18840 Corylus avellana HOM05D007242 ORTHO05D009089 2.8e-13 79.7 98 45.9
Phvul.002G329700 Phaseolus vulgaris HOM05D007242 ORTHO05D009089 2.8e-13 79.7 132 33.3
Psat4g001600 Pisum sativum HOM05D007242 ORTHO05D009089 2.8e-13 79.7 131 32.8
Nn1g05103 Nelumbo nucifera HOM05D007242 ORTHO05D009089 3.6e-13 79.3 94 46.8
CiPaw.15G142800 Carya illinoinensis HOM05D007242 ORTHO05D009089 8.0e-13 78.2 92 45.7
arahy.Tifrunner.gnm1.ann1.YZC3AP Arachis hypogaea HOM05D007242 ORTHO05D009089 1.4e-12 77.4 137 35.8
Lalb_Chr05g0221691 Lupinus albus HOM05D007242 ORTHO05D009089 1.4e-12 77.4 98 39.8
Peaxi162Scf00075g00618 Petunia axillaris HOM05D007242 ORTHO05D009089 1.4e-12 77.4 98 43.9
DCAR_026265 Daucus carota HOM05D007242 ORTHO05D009089 1.8e-12 77.0 96 46.9
Nitab4.5_0008184g0020 Nicotiana tabacum HOM05D007242 ORTHO05D009089 2.3e-12 76.6 167 31.7
Hund14133 Selenicereus undatus HOM05D007242 ORTHO05D009089 2.3e-12 76.6 94 43.6
Sopen01g004000 Solanum pennellii HOM05D007242 ORTHO05D009089 2.3e-12 76.6 92 43.5
Manes.13G136000 Manihot esculenta HOM05D007242 ORTHO05D009089 3.1e-12 76.3 98 42.9
vmacro22084 Vaccinium macrocarpon HOM05D007242 ORTHO05D009089 5.2e-12 75.5 168 33.3
arahy.Tifrunner.gnm1.ann1.79NCEV Arachis hypogaea HOM05D007242 ORTHO05D009089 8.9e-12 74.7 131 36.6
Duzib264G0124 Durio zibethinus HOM05D007242 ORTHO05D009089 1.5e-11 73.9 98 41.8
Sabra05G0104300 Salix brachista HOM05D007242 ORTHO05D009089 1.5e-11 73.9 94 46.8
Thecc.01G042000 Theobroma cacao HOM05D007242 ORTHO05D009089 1.5e-11 73.9 98 41.8
ClCG02G013250 Citrullus lanatus HOM05D007242 ORTHO05D009089 2.0e-11 73.6 131 35.9
MD00G1058400 Malus domestica HOM05D007242 ORTHO05D009089 2.6e-11 73.2 61 57.4
Solyc01g008480.4 Solanum lycopersicum HOM05D007242 ORTHO05D009089 3.4e-11 72.8 92 41.3
CARHR143900 Cardamine hirsuta HOM05D007242 ORTHO05D009089 4.4e-11 72.4 100 45.0
Migut.H00525 Erythranthe guttata HOM05D007242 ORTHO05D009089 5.8e-11 72.0 96 43.8
MD15G1269300 Malus domestica HOM05D007242 ORTHO05D009089 7.5e-11 71.6 133 35.3
Aa31LG2G8550 Aethionema arabicum HOM05D007242 ORTHO05D009089 9.8e-11 71.2 99 46.5
EL10Ac6g14891 Beta vulgaris HOM05D007242 ORTHO05D009089 9.8e-11 71.2 93 43.0
Peaxi162Scf00075g00617 Petunia axillaris HOM05D007242 ORTHO05D009089 9.8e-11 71.2 94 43.6
TWI53G0783 Tripterygium wilfordii HOM05D007242 ORTHO05D009089 1.7e-10 70.5 98 42.9
HanXRQChr07g0193491 Helianthus annuus HOM05D007242 ORTHO05D009089 2.2e-10 70.1 263 27.8
AT2G01390 Arabidopsis thaliana HOM05D007242 ORTHO05D009089 2.9e-10 69.7 100 44.0
Thhalv10000833m.g Eutrema salsugineum HOM05D007242 ORTHO05D009089 2.9e-10 69.7 98 38.8
MBI16_g13145_MAGBIO Magnolia biondii HOM05D007242 ORTHO05D009089 2.9e-10 69.7 96 41.7
Gohir.A11G044400 Gossypium hirsutum HOM05D007242 ORTHO05D009089 3.7e-10 69.3 98 39.8
Gorai.007G051500 Gossypium raimondii HOM05D007242 ORTHO05D009089 4.9e-10 68.9 98 38.8
Nitab4.5_0010783g0030 Nicotiana tabacum HOM05D007242 ORTHO05D009089 4.9e-10 68.9 92 42.4
AUR62008019 Chenopodium quinoa HOM05D007242 ORTHO05D009089 6.4e-10 68.6 94 39.4
CsaV3_2G017430 Cucumis sativus L. HOM05D007242 ORTHO05D009089 8.3e-10 68.2 131 32.8
AUR62003202 Chenopodium quinoa HOM05D007242 ORTHO05D009089 2.4e-09 66.6 94 38.3
Gohir.D11G047900 Gossypium hirsutum HOM05D007242 ORTHO05D009089 2.4e-09 66.6 98 37.8
AL5G10350 Arabidopsis lyrata HOM05D007242 ORTHO05D009089 3.2e-09 66.2 107 41.1
MSTRG.2935 Avicennia marina HOM05D007242 ORTHO05D009089 3.2e-09 66.2 95 43.2
A06p44470 Brassica napus HOM05D007242 ORTHO05D009089 3.2e-09 66.2 99 42.4
BraA06t27320Z Brassica rapa HOM05D007242 ORTHO05D009089 3.2e-09 66.2 99 42.4
A06p37220 Brassica napus HOM05D007242 ORTHO05D009089 4.1e-09 65.9 217 25.8
Sp2g12820 Schrenkiella parvula HOM05D007242 ORTHO05D009089 5.4e-09 65.5 100 42.0
THA.LOC104819810 Tarenaya hassleriana HOM05D007242 ORTHO05D009089 5.4e-09 65.5 95 40.0
Os10g0358700 Oryza sativa ssp. japonica HOM05D007242 ORTHO05D009089 7.0e-09 65.1 98 37.8
ATR0767G228 Amborella trichopoda HOM05D007242 ORTHO05D009089 1.2e-08 64.3 92 41.3
BraA06t26646Z Brassica rapa HOM05D007242 ORTHO05D009089 1.2e-08 64.3 182 29.7
Carub.0005s0035 Capsella rubella HOM05D007242 ORTHO05D009089 2.0e-08 63.5 100 42.0
Cc07_g05120 Coffea canephora HOM05D007242 ORTHO05D009089 2.0e-08 63.5 96 38.5
Eucgr.B03084 Eucalyptus grandis HOM05D007242 ORTHO05D009089 2.0e-08 63.5 98 37.8
HPP92_006079 Vanilla planifolia HOM05D007242 ORTHO05D009089 3.5e-08 62.8 169 26.0
PGR102G1679 Punica granatum HOM05D007242 ORTHO05D009089 4.6e-08 62.4 97 38.1
SGA_v2.0_scaffold204G41644 Striga asiatica HOM05D007242 ORTHO05D009089 1.3e-07 60.8 97 35.1
BcaC06g34194 Brassica carinata HOM05D007242 ORTHO05D009089 1.7e-07 60.5 99 40.4
C07p31760 Brassica napus HOM05D007242 ORTHO05D009089 1.7e-07 60.5 99 40.4
BolC7t43717H Brassica oleracea HOM05D007242 ORTHO05D009089 1.7e-07 60.5 99 40.4
ECA246G4655 Erigeron canadensis HOM05D007242 ORTHO05D009089 3.9e-07 59.3 236 24.6
BcaC06g31314 Brassica carinata HOM05D007242 ORTHO05D009089 5.0e-07 58.9 95 40.0
HanXRQChr14g0431951 Helianthus annuus HOM05D007242 ORTHO05D009089 1.5e-06 57.4 96 36.5
vmacro23494 Vaccinium macrocarpon HOM05D007242 ORTHO05D009089 2.5e-06 56.6 95 40.0


User provided reference genes

Program Settings