Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 2.9e-221 771.5 374 100.0
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 2.9e-221 771.5 374 100.0
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 2.5e-201 705.3 378 90.5
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 7.6e-198 693.7 378 86.8
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 1.7e-197 692.6 377 87.0
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 5.4e-196 687.6 377 86.2
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 7.1e-196 687.2 379 87.9
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 9.3e-196 686.8 378 86.8
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 1.2e-195 686.4 378 86.0
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 6.0e-195 684.1 378 85.7
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 1.0e-194 683.3 378 85.7
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.5e-193 679.5 377 86.5
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 2.5e-193 678.7 378 85.4
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 3.3e-193 678.3 376 85.6
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 2.8e-192 675.2 379 85.8
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 6.2e-192 674.1 376 83.5
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 1.1e-191 673.3 378 84.1
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 4.0e-191 671.4 378 84.4
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 9.0e-191 670.2 378 83.1
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 1.2e-190 669.8 378 82.8
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 2.6e-190 668.7 378 83.9
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 4.5e-190 667.9 376 84.0
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 5.8e-190 667.5 376 83.8
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 7.6e-190 667.2 376 83.8
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 9.9e-190 666.8 378 83.1
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 4.9e-189 664.5 378 83.3
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 6.4e-189 664.1 378 83.3
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 6.4e-189 664.1 376 83.2
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 8.4e-189 663.7 378 83.1
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 1.1e-188 663.3 373 83.4
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 1.9e-188 662.5 379 82.1
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 3.2e-188 661.8 378 82.8
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 1.2e-187 659.8 375 83.5
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 1.6e-187 659.4 378 82.5
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 2.1e-187 659.1 378 83.3
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 2.7e-187 658.7 378 82.5
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 4.6e-187 657.9 378 82.3
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 1.0e-186 656.8 373 82.8
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 1.8e-186 656.0 374 80.5
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 2.3e-186 655.6 378 81.5
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 2.3e-186 655.6 373 83.1
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 5.1e-186 654.4 414 76.8
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 5.1e-186 654.4 380 80.8
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 5.1e-186 654.4 378 80.7
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 8.7e-186 653.7 403 77.9
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 8.7e-186 653.7 413 77.2
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 1.1e-185 653.3 374 80.2
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 1.5e-185 652.9 374 79.4
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 1.5e-185 652.9 374 79.7
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 1.5e-185 652.9 378 80.7
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 2.5e-185 652.1 379 80.7
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 2.5e-185 652.1 378 81.5
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 3.3e-185 651.7 378 81.5
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 5.6e-185 651.0 374 81.3
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 5.6e-185 651.0 377 80.1
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 5.6e-185 651.0 374 81.6
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 5.6e-185 651.0 377 82.0
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 7.4e-185 650.6 378 80.4
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 1.3e-184 649.8 374 79.4
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 1.3e-184 649.8 378 80.4
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 1.6e-184 649.4 378 80.4
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 2.8e-184 648.7 378 79.9
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 2.8e-184 648.7 377 80.6
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 3.7e-184 648.3 378 81.0
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 8.2e-184 647.1 374 79.1
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 1.1e-183 646.7 377 79.6
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 1.4e-183 646.4 378 80.4
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 1.8e-183 646.0 373 82.3
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 2.4e-183 645.6 381 80.8
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 3.1e-183 645.2 370 82.4
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 6.9e-183 644.0 374 78.9
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.2e-182 643.3 408 76.2
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 1.2e-182 643.3 374 80.2
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 1.2e-182 643.3 374 81.3
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 1.5e-182 642.9 374 80.7
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 1.5e-182 642.9 380 82.1
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 2.0e-182 642.5 373 78.8
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 2.0e-182 642.5 373 78.8
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 3.4e-182 641.7 374 80.5
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 7.6e-182 640.6 378 81.0
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 1.0e-181 640.2 375 78.4
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 1.0e-181 640.2 379 78.4
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 2.9e-181 638.6 376 79.8
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 6.5e-181 637.5 373 78.3
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 6.5e-181 637.5 373 78.3
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 1.9e-180 636.0 376 78.7
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 2.5e-180 635.6 376 79.8
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 1.0e-178 630.2 392 75.5
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 3.9e-178 628.2 360 82.8
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 1.9e-177 625.9 359 83.0
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 1.6e-176 622.9 379 78.6
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 2.8e-176 622.1 340 87.1
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 9.0e-175 617.1 393 75.1
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 2.1e-171 605.9 374 77.5
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 6.7e-170 600.9 381 75.6
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 3.3e-169 598.6 379 80.2
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.1e-167 593.6 386 72.3
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 6.5e-165 584.3 378 73.3
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 3.0e-162 575.5 376 72.3
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 8.8e-162 573.9 378 73.0
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 3.1e-159 565.5 378 74.9
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 2.7e-155 552.4 373 69.4
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 4.7e-155 551.6 326 83.1
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 3.0e-154 548.9 377 71.9
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 2.0e-153 546.2 377 71.6
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 5.3e-151 538.1 362 70.4
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 9.1e-151 537.3 353 72.0
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 1.7e-149 533.1 376 66.5
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 1.5e-148 530.0 378 68.0
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 6.3e-144 514.6 392 61.7
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 6.8e-138 494.6 380 62.6
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 9.5e-132 474.2 256 88.3
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 6.8e-130 468.0 405 57.0
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 9.5e-124 447.6 293 71.7
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 9.5e-124 447.6 293 71.7
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 3.1e-114 416.0 291 68.4
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 1.5e-113 413.7 344 61.3
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 4.4e-113 412.1 391 53.7
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 5.6e-108 395.2 266 71.4
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 7.3e-108 394.8 281 67.3
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 1.4e-106 390.6 260 71.2
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 5.2e-106 388.7 290 66.2
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 8.1e-91 338.2 383 45.4
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 9.9e-89 331.3 208 76.0
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 2.1e-70 270.4 249 55.8
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 2.8e-67 260.0 312 43.6
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 7.1e-63 245.4 570 30.7
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 3.0e-53 213.4 126 82.5
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 5.9e-49 199.1 110 83.6
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 6.7e-45 185.7 450 30.9
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 4.8e-43 179.5 112 77.7
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 2.5e-31 140.6 97 64.9
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 6.1e-22 109.4 60 76.7
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 1.8e-21 107.8 65 73.8
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 2.3e-21 107.5 64 75.0
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 3.0e-21 107.1 74 68.9
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 3.0e-21 107.1 65 73.8
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 4.0e-21 106.7 102 52.9
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 5.2e-21 106.3 65 72.3
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 5.2e-21 106.3 65 72.3
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 8.8e-21 105.5 66 71.2
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 1.5e-20 104.8 65 70.8
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 2.0e-20 104.4 64 71.9
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 2.6e-20 104.0 65 70.8
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 3.4e-20 103.6 65 72.3
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 2.8e-14 84.0 69 62.3
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 8.9e-13 79.0 38 92.1
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 4.4e-12 76.6 85 50.6
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 4.1e-10 70.1 39 79.5
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 1.3e-08 65.1 45 68.9
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 3.9e-08 63.5 30 93.3
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 4.3e-07 60.1 43 67.4


User provided reference genes

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