Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 5.0e-229 797.7 496 100.0
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 1.4e-228 796.2 496 98.0
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 2.1e-134 483.4 459 64.1
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 3.6e-131 472.6 436 68.3
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 1.1e-124 451.1 461 60.7
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 2.2e-120 436.8 509 57.0
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 2.2e-120 436.8 451 62.3
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 6.5e-120 435.3 597 53.4
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 1.0e-117 427.9 483 56.5
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 8.7e-117 424.9 453 59.8
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 1.1e-116 424.5 450 61.1
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 1.6e-115 420.6 456 57.2
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 5.3e-114 415.6 441 60.8
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 4.5e-113 412.5 473 55.6
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 2.9e-112 409.8 435 58.9
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 5.5e-111 405.6 441 57.6
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 9.3e-111 404.8 454 57.5
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 1.6e-110 404.1 454 55.7
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 3.0e-109 399.8 455 57.1
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 8.7e-109 398.3 479 56.4
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 1.1e-108 397.9 557 49.6
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 1.9e-108 397.1 441 56.0
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 1.9e-108 397.1 492 54.3
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 3.7e-107 392.9 456 56.1
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.4e-106 390.2 468 53.4
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 2.4e-106 390.2 466 53.6
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 4.1e-106 389.4 465 55.9
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 1.7e-104 384.0 438 56.4
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 3.8e-104 382.9 432 56.9
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 1.4e-103 380.9 440 55.9
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 4.2e-103 379.4 439 54.7
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 5.5e-103 379.0 466 52.8
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 2.3e-101 373.6 469 53.1
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 8.8e-101 371.7 466 53.0
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 7.4e-100 368.6 537 48.2
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 9.7e-100 368.2 440 53.9
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 1.3e-99 367.9 461 54.4
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 2.2e-99 367.1 452 54.0
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 1.8e-98 364.0 453 53.0
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 2.0e-97 360.5 456 54.2
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 2.0e-97 360.5 454 51.3
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 1.3e-96 357.8 437 54.5
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 5.0e-96 355.9 455 52.5
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 8.5e-96 355.1 452 50.9
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 1.9e-95 354.0 399 61.4
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 5.5e-95 352.4 450 52.2
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 7.2e-95 352.1 454 52.2
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.0e-92 344.0 451 51.2
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 2.0e-92 344.0 466 50.9
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 2.8e-91 340.1 446 50.2
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 6.3e-91 339.0 447 51.7
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 1.2e-89 334.7 384 56.8
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 3.5e-89 333.2 450 49.3
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 6.5e-88 328.9 476 47.9
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 8.5e-88 328.6 450 50.0
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 1.5e-87 327.8 442 50.7
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.9e-87 327.4 450 48.4
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 4.2e-87 326.2 434 52.5
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 4.2e-87 326.2 438 51.4
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 8.0e-86 322.0 437 49.0
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 2.3e-85 320.5 453 48.1
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 4.0e-85 319.7 450 47.6
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 2.6e-84 317.0 440 50.9
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 8.2e-83 312.0 420 47.1
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 2.4e-82 310.5 416 51.0
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 2.4e-82 310.5 432 50.2
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 2.7e-81 307.0 433 48.0
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 2.7e-81 307.0 396 51.5
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 4.5e-81 306.2 449 47.4
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 1.3e-80 304.7 352 57.4
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 1.7e-80 304.3 444 48.4
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 7.2e-79 298.9 435 49.7
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 9.4e-79 298.5 443 47.2
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 6.1e-78 295.8 332 55.4
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 1.0e-77 295.0 272 65.1
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 4.4e-76 289.7 433 48.3
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 8.3e-75 285.4 441 46.3
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 1.1e-74 285.0 455 44.2
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 3.1e-74 283.5 439 44.0
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 7.7e-73 278.9 443 45.4
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.3e-72 278.1 474 43.5
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 1.1e-71 275.0 444 47.1
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 5.5e-71 272.7 470 43.6
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 1.4e-69 268.1 410 45.6
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.4e-69 268.1 367 51.0
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 1.8e-69 267.7 455 44.4
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 8.9e-69 265.4 415 45.3
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 1.5e-68 264.6 434 44.0
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 4.4e-68 263.1 446 42.2
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 4.4e-68 263.1 427 44.5
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 7.5e-68 262.3 433 46.4
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 1.3e-67 261.5 427 45.0
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 1.3e-67 261.5 425 48.5
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.3e-67 261.5 431 44.5
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 3.7e-67 260.0 461 40.8
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 1.4e-66 258.1 446 43.7
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 1.4e-66 258.1 442 43.7
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 7.8e-65 252.3 424 46.2
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 1.0e-64 251.9 444 42.6
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.1e-63 248.4 447 42.5
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 2.5e-63 247.3 384 47.9
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 4.3e-63 246.5 453 41.1
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 3.0e-61 240.4 413 43.1
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 3.0e-61 240.4 467 39.6
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 1.2e-60 238.4 417 41.5
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 4.4e-60 236.5 433 40.6
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 2.2e-59 234.2 451 43.5
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 1.1e-58 231.9 417 43.2
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 3.2e-58 230.3 340 49.4
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 6.0e-57 226.1 445 39.3
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 3.5e-41 173.7 183 57.4
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 1.1e-39 168.7 367 42.8
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.6e-33 148.3 139 61.2
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 2.7e-33 147.5 269 42.0
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 1.7e-32 144.8 316 39.2
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 4.3e-31 140.2 119 61.3
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 2.4e-29 134.4 270 42.2
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 9.0e-29 132.5 258 39.9
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 3.4e-28 130.6 98 70.4
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 9.9e-28 129.0 205 44.9
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 1.7e-27 128.3 480 29.0
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 3.8e-27 127.1 444 29.7
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.1e-25 121.3 446 32.3
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 9.0e-21 105.9 454 28.6
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.2e-20 105.5 429 31.7
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 4.9e-19 100.1 430 28.6
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 5.4e-18 96.7 333 30.6
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 7.1e-18 96.3 114 44.7
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 6.0e-17 93.2 103 50.5
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 3.0e-16 90.9 84 61.9
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 1.9e-15 88.2 63 68.3
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 2.4e-13 81.3 63 65.1
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 4.5e-12 77.0 64 64.1
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 1.3e-11 75.5 116 47.4
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 4.6e-09 67.0 62 56.5
SEGI_25872 Sequoiadendron giganteum HOM05D005355 ORTHO05D006591 4.3e-07 60.5 374 30.2
SGA_v2.0_scaffold340G49301 Striga asiatica HOM05D005355 ORTHO05D006591 5.6e-07 60.1 67 55.2
arahy.Tifrunner.gnm1.ann1.F65TCR Arachis hypogaea HOM05D005355 ORTHO05D006591 2.8e-06 57.8 36 69.4


User provided reference genes

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