Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006126 Camellia sinensis var. sinensis HOM05D032456 ORTHO05D112149 3.4e-45 184.5 85 100.0
CSS0038497 Camellia sinensis var. sinensis HOM05D032456 ORTHO05D111136 6.9e-22 107.1 85 67.1
CSS0032286 Camellia sinensis var. sinensis HOM05D032456 ORTHO05D110395 7.9e-18 93.6 87 59.8
CSS0018877 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 7.9e-10 67.0 36 86.1
CSS0030828 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D001445 1.4e-09 66.2 34 85.3
CSS0033161 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D001445 1.4e-09 66.2 34 85.3
CSS0016797 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 1.8e-09 65.9 34 88.2
CSS0047496 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 1.8e-09 65.9 34 88.2
CSS0000736 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 9.7e-08 60.1 34 82.4
Hma1.2p1_1092F.1_g255920 Hydrangea macrophylla HOM05D000434 ORTHO05D001445 9.7e-08 60.1 34 76.5
ClCG03G003140 Citrullus lanatus HOM05D000434 ORTHO05D001445 1.3e-07 59.7 35 71.4
Sed0009577 Sechium edule HOM05D000434 ORTHO05D001445 1.3e-07 59.7 34 76.5
Lj9A441T90 Lonicera japonica HOM05D000434 ORTHO05D001445 1.7e-07 59.3 35 71.4
THA.LOC104822549 Tarenaya hassleriana HOM05D000434 ORTHO05D001445 2.2e-07 58.9 34 76.5
Cpa.g.sc159.8 Carica papaya HOM05D000434 ORTHO05D001445 2.8e-07 58.5 34 73.5
Dinv38517 Davidia involucrata HOM05D000434 ORTHO05D001445 2.8e-07 58.5 34 73.5
MELO3C002313.2 Cucumis melo HOM05D000434 ORTHO05D001445 3.7e-07 58.2 34 73.5
CsaV3_1G009040 Cucumis sativus L. HOM05D000434 ORTHO05D001445 3.7e-07 58.2 34 73.5
Rhsim12G0168700 Rhododendron simsii HOM05D000434 ORTHO05D001445 3.7e-07 58.2 34 76.5
vmacro16650 Vaccinium macrocarpon HOM05D000434 ORTHO05D001445 4.8e-07 57.8 34 73.5
vmacro22880 Vaccinium macrocarpon HOM05D000434 ORTHO05D001445 4.8e-07 57.8 34 73.5
DCAR_016445 Daucus carota HOM05D000434 ORTHO05D001445 1.1e-06 56.6 34 76.5
Ah.08g218680 Amaranthus hybridus HOM05D000434 ORTHO05D001445 1.4e-06 56.2 36 66.7
Carub.0007s1632 Capsella rubella HOM05D000434 ORTHO05D001445 1.4e-06 56.2 34 73.5
Cc04_g11320 Coffea canephora HOM05D000434 ORTHO05D001445 1.8e-06 55.8 32 75.0
AL7G28450 Arabidopsis lyrata HOM05D000434 ORTHO05D001445 3.1e-06 55.1 34 73.5
GSVIVG01007619001 Vitis vinifera HOM05D000434 ORTHO05D001445 3.1e-06 55.1 35 74.3
CiPaw.12G032400 Carya illinoinensis HOM05D000434 ORTHO05D001445 5.3e-06 54.3 34 70.6
Aa31LG7G11110 Aethionema arabicum HOM05D000434 ORTHO05D001445 6.9e-06 53.9 34 70.6
FvH4_5g06570 Fragaria vesca HOM05D000434 ORTHO05D001445 6.9e-06 53.9 34 73.5
FAN08G0959 Fragaria x ananassa HOM05D000434 ORTHO05D001445 6.9e-06 53.9 34 73.5
FAN13G3112 Fragaria x ananassa HOM05D000434 ORTHO05D001445 6.9e-06 53.9 34 73.5
FAN18G2892 Fragaria x ananassa HOM05D000434 ORTHO05D001445 6.9e-06 53.9 34 73.5
RcHm_v2.0_Chr7g0192261 Rosa chinensis HOM05D000434 ORTHO05D001445 6.9e-06 53.9 34 73.5
Sp7g22720 Schrenkiella parvula HOM05D000434 ORTHO05D001445 6.9e-06 53.9 34 70.6
Thecc.03G116800 Theobroma cacao HOM05D000434 ORTHO05D001445 6.9e-06 53.9 35 71.4
A01p16060 Brassica napus HOM05D000434 ORTHO05D005992 9.1e-06 53.5 34 70.6
C01p20050 Brassica napus HOM05D000434 ORTHO05D001445 9.1e-06 53.5 34 70.6
BolC1t01932H Brassica oleracea HOM05D000434 ORTHO05D001445 9.1e-06 53.5 34 70.6
AUR62022127 Chenopodium quinoa HOM05D000434 ORTHO05D001445 9.1e-06 53.5 34 67.6
Duzib084G1281 Durio zibethinus HOM05D000434 ORTHO05D001445 9.1e-06 53.5 35 71.4
Lj4g0010512 Lotus japonicus HOM05D000434 ORTHO05D001445 9.1e-06 53.5 29 79.3


User provided reference genes

Program Settings