Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006121 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 7.3e-36 153.3 74 100.0
CSS0026763 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 2.9e-24 114.8 54 100.0
CSS0001057 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 5.4e-23 110.5 54 96.3
CSS0001558 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 4.3e-12 74.3 54 72.2
CSS0004821 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 4.3e-12 74.3 54 72.2
Actinidia27081 Actinidia chinensis HOM05D006266 ORTHO05D008016 1.1e-10 69.7 34 94.1
Atru.chr4.1256 Acer truncatum HOM05D006266 ORTHO05D008016 3.1e-10 68.2 34 91.2
PSO675G5931 Papaver somniferum HOM05D006266 ORTHO05D008016 3.1e-10 68.2 34 91.2
CANSAT78G1968 Cannabis sativa HOM05D006266 ORTHO05D008016 5.3e-10 67.4 34 88.2
Nn7g37595 Nelumbo nucifera HOM05D006266 ORTHO05D008016 5.3e-10 67.4 34 88.2
Gohir.A10G139200 Gossypium hirsutum HOM05D006266 ORTHO05D008016 9.0e-10 66.6 34 85.3
MBI07_g02893_MAGBIO Magnolia biondii HOM05D006266 ORTHO05D008016 9.0e-10 66.6 34 88.2
PSO017G5469 Papaver somniferum HOM05D006266 ORTHO05D008016 9.0e-10 66.6 34 85.3
Prupe.1G197500 Prunus persica HOM05D006266 ORTHO05D008016 9.0e-10 66.6 34 88.2
QL10p050722 Quercus lobata HOM05D006266 ORTHO05D008016 9.0e-10 66.6 34 88.2
RcHm_v2.0_Chr4g0406421 Rosa chinensis HOM05D006266 ORTHO05D008016 9.0e-10 66.6 34 88.2
TAR362G0699 Trochodendron aralioides HOM05D006266 ORTHO05D008016 9.0e-10 66.6 34 85.3
GSVIVG01010835001 Vitis vinifera HOM05D006266 ORTHO05D008016 9.0e-10 66.6 34 88.2
FvH4_4g10960 Fragaria vesca HOM05D006266 ORTHO05D008016 1.2e-09 66.2 34 85.3
FAN17G0658 Fragaria x ananassa HOM05D006266 ORTHO05D008016 1.2e-09 66.2 34 85.3
Lj3C1G0 Lonicera japonica HOM05D006266 ORTHO05D008016 1.2e-09 66.2 34 85.3
Lj3C32G4 Lonicera japonica HOM05D006266 ORTHO05D008016 1.2e-09 66.2 34 85.3
Ca_01251_v3 Cicer arietinum L. HOM05D006266 ORTHO05D008016 1.5e-09 65.9 34 85.3
Phvul.005G153800 Phaseolus vulgaris HOM05D006266 ORTHO05D008016 1.5e-09 65.9 34 85.3
Psat5g289640 Pisum sativum HOM05D006266 ORTHO05D008016 1.5e-09 65.9 34 85.3
Cpa.g.sc9.312 Carica papaya HOM05D006266 ORTHO05D008016 2.0e-09 65.5 34 85.3
Thecc.04G175700 Theobroma cacao HOM05D006266 ORTHO05D008016 2.0e-09 65.5 34 82.4
TPR.G18865 Trifolium pratense HOM05D006266 ORTHO05D008016 2.0e-09 65.5 34 85.3
Lalb_Chr14g0372511 Lupinus albus HOM05D006266 ORTHO05D008016 2.6e-09 65.1 34 85.3
HPP92_022167 Vanilla planifolia HOM05D006266 ORTHO05D008016 2.6e-09 65.1 34 85.3
VMungo1080G0961 Vigna mungo HOM05D006266 ORTHO05D008016 2.6e-09 65.1 34 85.3
Dinv44151 Davidia involucrata HOM05D006266 ORTHO05D008016 3.4e-09 64.7 34 82.4
Manes.11G123500 Manihot esculenta HOM05D006266 ORTHO05D008016 3.4e-09 64.7 34 82.4
Potri.017G027500 Populus trichocarpa HOM05D006266 ORTHO05D008016 3.4e-09 64.7 43 67.4
BcaC02g12401 Brassica carinata HOM05D006266 ORTHO05D008016 4.5e-09 64.3 34 85.3
Hma1.2p1_0324F.1_g125550 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 4.5e-09 64.3 34 82.4
Hma1.2p1_0324F.1_g125560 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 4.5e-09 64.3 34 82.4
Lj3g0007796 Lotus japonicus HOM05D006266 ORTHO05D008016 4.5e-09 64.3 34 82.4
AL4G42140 Arabidopsis lyrata HOM05D006266 ORTHO05D008016 5.8e-09 63.9 34 85.3
AT2G43400 Arabidopsis thaliana HOM05D006266 ORTHO05D008016 5.8e-09 63.9 34 85.3
A05p03740 Brassica napus HOM05D006266 ORTHO05D008016 5.8e-09 63.9 34 85.3
C04p04440 Brassica napus HOM05D006266 ORTHO05D008016 5.8e-09 63.9 34 85.3
BolC4t22077H Brassica oleracea HOM05D006266 ORTHO05D008016 5.8e-09 63.9 34 85.3
BraA05t19361Z Brassica rapa HOM05D006266 ORTHO05D008016 5.8e-09 63.9 34 85.3
Carub.0004s2587 Capsella rubella HOM05D006266 ORTHO05D008016 5.8e-09 63.9 34 85.3
CDE09G1029 Ceratophyllum demersum HOM05D006266 ORTHO05D008016 5.8e-09 63.9 43 65.1
AUR62002342 Chenopodium quinoa HOM05D006266 ORTHO05D008016 5.8e-09 63.9 32 84.4
AUR62023848 Chenopodium quinoa HOM05D006266 ORTHO05D008016 5.8e-09 63.9 32 84.4
Dinv44175 Davidia involucrata HOM05D006266 ORTHO05D008016 5.8e-09 63.9 34 79.4
Medtr2g099040 Medicago truncatula HOM05D006266 ORTHO05D008016 5.8e-09 63.9 34 79.4
Thhalv10001353m.g Eutrema salsugineum HOM05D006266 ORTHO05D008016 7.6e-09 63.5 34 85.3
MD04G1042900 Malus domestica HOM05D006266 ORTHO05D008016 7.6e-09 63.5 34 85.3
Sp4g25480 Schrenkiella parvula HOM05D006266 ORTHO05D008016 7.6e-09 63.5 34 85.3
SGA_v2.0_scaffold17G08154 Striga asiatica HOM05D006266 ORTHO05D008016 7.6e-09 63.5 34 79.4
Ciclev10019615m.g Citrus clementina HOM05D006266 ORTHO05D008016 1.0e-08 63.2 34 82.4
Duzib151G0889 Durio zibethinus HOM05D006266 ORTHO05D008016 1.0e-08 63.2 34 82.4
Hund12414 Selenicereus undatus HOM05D006266 ORTHO05D008016 1.0e-08 63.2 34 76.5
Sc19g0002870 Simmondsia chinensis HOM05D006266 ORTHO05D008016 1.0e-08 63.2 34 82.4
CAN.G51.9 Capsicum annuum HOM05D006266 ORTHO05D008016 1.3e-08 62.8 36 77.8
CARHR138470 Cardamine hirsuta HOM05D006266 ORTHO05D008016 1.3e-08 62.8 34 85.3
Migut.G01347 Erythranthe guttata HOM05D006266 ORTHO05D008016 1.3e-08 62.8 34 76.5
Eucgr.H00345 Eucalyptus grandis HOM05D006266 ORTHO05D008016 1.3e-08 62.8 34 82.4
Glyma.15G029200 Glycine max HOM05D006266 ORTHO05D008016 1.3e-08 62.8 34 82.4
Oeu024477.1 Olea europaea HOM05D006266 ORTHO05D008016 1.3e-08 62.8 34 79.4
Rhsim09G0023000 Rhododendron simsii HOM05D006266 ORTHO05D008016 1.3e-08 62.8 33 87.9
vmacro00635 Vaccinium macrocarpon HOM05D006266 ORTHO05D008016 1.3e-08 62.8 42 69.0
Aa31LG1G25150 Aethionema arabicum HOM05D006266 ORTHO05D008016 1.7e-08 62.4 34 82.4
PGR142G3304 Punica granatum HOM05D006266 ORTHO05D008016 1.7e-08 62.4 43 67.4
Sabra17G0016500 Salix brachista HOM05D006266 ORTHO05D008016 1.7e-08 62.4 34 79.4
Sed0000993 Sechium edule HOM05D006266 ORTHO05D008016 1.7e-08 62.4 34 82.4
Gohir.D10G127600 Gossypium hirsutum HOM05D006266 ORTHO05D008016 2.2e-08 62.0 34 79.4
Gorai.011G140700 Gossypium raimondii HOM05D006266 ORTHO05D008016 2.2e-08 62.0 34 79.4
Peaxi162Scf00184g00418 Petunia axillaris HOM05D006266 ORTHO05D008016 2.2e-08 62.0 36 72.2
Aqoxy2G04160 Aquilegia oxysepala HOM05D006266 ORTHO05D008016 2.9e-08 61.6 34 82.4
THA.LOC104805138 Tarenaya hassleriana HOM05D006266 ORTHO05D008016 2.9e-08 61.6 34 82.4
MSTRG.4284 Avicennia marina HOM05D006266 ORTHO05D008016 3.8e-08 61.2 32 78.1
Cfa015189 Carpinus fangiana HOM05D006266 ORTHO05D008016 3.8e-08 61.2 34 79.4
Haze_01464 Corylus avellana HOM05D006266 ORTHO05D008016 3.8e-08 61.2 34 79.4
CsaV3_3G015950 Cucumis sativus L. HOM05D006266 ORTHO05D008016 3.8e-08 61.2 34 79.4
DCAR_028531 Daucus carota HOM05D006266 ORTHO05D008016 3.8e-08 61.2 34 82.4
CiPaw.02G052400 Carya illinoinensis HOM05D006266 ORTHO05D008016 4.9e-08 60.8 34 79.4
Ah.07g202330 Amaranthus hybridus HOM05D006266 ORTHO05D008016 6.5e-08 60.5 34 76.5
AUR62006021 Chenopodium quinoa HOM05D001494 ORTHO05D001364 6.5e-08 60.5 31 80.6
ClCG05G007190 Citrullus lanatus HOM05D006266 ORTHO05D008016 1.1e-07 59.7 34 79.4
HanXRQChr01g0023481 Helianthus annuus HOM05D006266 ORTHO05D008016 1.1e-07 59.7 34 79.4
Lsat_1_v5_gn_1_77821 Lactuca sativa HOM05D006266 ORTHO05D008016 1.1e-07 59.7 34 79.4
ATR0743G015 Amborella trichopoda HOM05D006266 ORTHO05D008016 1.4e-07 59.3 34 76.5
AagrBONN_evm.TU.Sc2ySwM_117.3933 Anthoceros agrestis HOM05D006266 ORTHO05D008016 1.9e-07 58.9 36 63.9
Solyc12g021170.2 Solanum lycopersicum HOM05D006266 ORTHO05D008016 1.9e-07 58.9 36 69.4
Sopen12g011050 Solanum pennellii HOM05D006266 ORTHO05D008016 1.9e-07 58.9 36 69.4
Cc03_g11970 Coffea canephora HOM05D006266 ORTHO05D008016 4.2e-07 57.8 34 76.5
Nitab4.5_0001990g0030 Nicotiana tabacum HOM05D006266 ORTHO05D008016 4.2e-07 57.8 36 69.4
Pp3c26_13090 Physcomitrium patens HOM05D006266 ORTHO05D008016 5.5e-07 57.4 36 63.9
SMO141G0282 Selaginella moellendorffii HOM05D006266 ORTHO05D008016 7.1e-07 57.0 36 63.9
Nitab4.5_0000505g0020 Nicotiana tabacum HOM05D006266 ORTHO05D008016 9.3e-07 56.6 36 66.7
Zm00001eb043590 Zea mays HOM05D006266 ORTHO05D008016 9.3e-07 56.6 34 70.6
MELO3C006793.2 Cucumis melo HOM05D006266 ORTHO05D008016 1.6e-06 55.8 35 65.7
ECA248G0977 Erigeron canadensis HOM05D006266 ORTHO05D008016 2.1e-06 55.5 34 76.5
Mapoly0012s0124 Marchantia polymorpha HOM05D006266 ORTHO05D008016 6.0e-06 53.9 36 58.3


User provided reference genes

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