Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 1.2e-97 359.8 179 100.0
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 1.2e-97 359.8 179 100.0
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 2.0e-26 123.2 73 76.7
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 1.1e-24 117.5 73 75.3
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 1.4e-24 117.1 77 70.1
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 9.1e-24 114.4 73 72.6
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 3.5e-23 112.5 73 74.0
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 1.0e-22 110.9 73 69.9
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 1.7e-22 110.2 75 70.7
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 2.2e-22 109.8 73 68.5
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 2.2e-22 109.8 73 68.5
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 2.2e-22 109.8 73 68.5
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 2.2e-22 109.8 73 68.5
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 6.5e-22 108.2 72 69.4
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 6.5e-22 108.2 72 69.4
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 8.5e-22 107.8 73 65.8
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 1.1e-21 107.5 73 65.8
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 1.1e-21 107.5 73 71.2
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 1.5e-21 107.1 73 71.2
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 1.5e-21 107.1 74 67.6
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 2.5e-21 106.3 70 70.0
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 2.5e-21 106.3 64 75.0
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 3.2e-21 105.9 73 65.8
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 4.2e-21 105.5 73 69.9
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 5.5e-21 105.1 73 65.8
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 5.5e-21 105.1 73 65.8
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 1.2e-20 104.0 75 65.3
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 1.6e-20 103.6 73 67.1
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 2.1e-20 103.2 73 65.8
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 2.7e-20 102.8 73 65.8
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 2.7e-20 102.8 75 65.3
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 3.6e-20 102.4 73 63.0
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 4.7e-20 102.1 73 68.5
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 6.1e-20 101.7 73 65.8
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 8.0e-20 101.3 74 68.9
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 8.0e-20 101.3 73 64.4
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 8.0e-20 101.3 73 67.1
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 1.4e-19 100.5 73 61.6
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.8e-19 100.1 73 64.4
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 1.8e-19 100.1 73 63.0
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 2.3e-19 99.8 73 65.8
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 2.3e-19 99.8 73 60.3
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 3.0e-19 99.4 73 63.0
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 3.0e-19 99.4 73 64.4
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 4.0e-19 99.0 75 57.3
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 4.0e-19 99.0 73 63.0
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 5.2e-19 98.6 73 60.3
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 5.2e-19 98.6 73 64.4
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 5.2e-19 98.6 73 60.3
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 5.2e-19 98.6 73 63.0
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 5.2e-19 98.6 73 63.0
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 6.8e-19 98.2 73 58.9
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 6.8e-19 98.2 74 63.5
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 6.8e-19 98.2 74 62.2
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 8.8e-19 97.8 73 60.3
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 8.8e-19 97.8 68 63.2
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.2e-18 97.4 70 64.3
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 1.2e-18 97.4 73 64.4
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 1.2e-18 97.4 71 62.0
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 2.0e-18 96.7 58 77.6
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.0e-18 96.7 73 61.6
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 2.6e-18 96.3 74 63.5
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 3.4e-18 95.9 74 60.8
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 4.4e-18 95.5 79 59.5
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 4.4e-18 95.5 83 59.0
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 5.7e-18 95.1 73 60.3
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 7.5e-18 94.7 73 58.9
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 7.5e-18 94.7 73 63.0
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 7.5e-18 94.7 71 60.6
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 9.8e-18 94.4 73 61.6
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 9.8e-18 94.4 73 61.6
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 9.8e-18 94.4 77 64.9
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 1.3e-17 94.0 72 61.1
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 2.2e-17 93.2 71 59.2
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 2.8e-17 92.8 64 67.2
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 4.8e-17 92.0 70 62.9
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 4.8e-17 92.0 74 59.5
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 8.3e-17 91.3 70 62.9
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 8.3e-17 91.3 63 63.5
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.1e-16 90.9 70 57.1
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 1.4e-16 90.5 68 66.2
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 1.4e-16 90.5 67 64.2
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 1.8e-16 90.1 56 69.6
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 1.8e-16 90.1 70 60.0
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 2.4e-16 89.7 53 71.7
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 2.4e-16 89.7 53 71.7
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.4e-16 89.7 70 61.4
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.4e-16 89.7 62 66.1
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 3.1e-16 89.4 70 60.0
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 3.1e-16 89.4 73 60.3
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 5.4e-16 88.6 73 56.2
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 7.0e-16 88.2 58 67.2
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 7.0e-16 88.2 73 63.0
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 7.0e-16 88.2 73 63.0
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 7.0e-16 88.2 67 64.2
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 9.1e-16 87.8 63 61.9
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 9.1e-16 87.8 50 72.0
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 1.2e-15 87.4 73 61.6
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 1.2e-15 87.4 46 78.3
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 1.2e-15 87.4 76 56.6
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 1.6e-15 87.0 50 72.0
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 1.6e-15 87.0 76 57.9
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.6e-15 87.0 64 62.5
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 2.0e-15 86.7 46 78.3
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 2.0e-15 86.7 64 59.4
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 2.7e-15 86.3 85 51.8
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 2.7e-15 86.3 73 57.5
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 3.5e-15 85.9 69 58.0
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 4.5e-15 85.5 62 61.3
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 5.9e-15 85.1 46 76.1
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 5.9e-15 85.1 46 76.1
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 5.9e-15 85.1 46 76.1
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 5.9e-15 85.1 45 77.8
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 7.7e-15 84.7 56 69.6
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 7.7e-15 84.7 73 63.0
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 7.7e-15 84.7 50 70.0
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 7.7e-15 84.7 73 54.8
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 1.0e-14 84.3 81 55.6
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 1.0e-14 84.3 73 58.9
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 1.0e-14 84.3 73 58.9
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.0e-14 84.3 62 66.1
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 1.3e-14 84.0 56 64.3
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 1.3e-14 84.0 70 58.6
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 1.3e-14 84.0 73 57.5
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 1.7e-14 83.6 81 51.9
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 1.7e-14 83.6 67 61.2
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 2.9e-14 82.8 64 57.8
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 3.8e-14 82.4 54 64.8
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 3.8e-14 82.4 66 59.1
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 5.0e-14 82.0 42 81.0
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 6.5e-14 81.6 78 53.8
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 6.5e-14 81.6 78 53.8
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 8.5e-14 81.3 43 76.7
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 8.5e-14 81.3 39 79.5
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 8.5e-14 81.3 65 56.9
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 1.1e-13 80.9 54 66.7
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 1.1e-13 80.9 76 53.9
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 1.1e-13 80.9 59 57.6
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 2.5e-13 79.7 56 60.7
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 7.2e-13 78.2 40 80.0
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 2.1e-12 76.6 38 81.6
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 2.1e-12 76.6 47 68.1
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 3.6e-12 75.9 67 56.7
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 4.7e-12 75.5 66 59.1
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 6.1e-12 75.1 35 85.7
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 8.0e-12 74.7 42 76.2
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 1.0e-11 74.3 50 68.0
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 1.0e-11 74.3 38 78.9
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 1.0e-11 74.3 35 82.9
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 2.6e-10 69.7 63 60.3
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 8.3e-09 64.7 38 65.8
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 5.9e-07 58.5 46 63.0
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 7.7e-07 58.2 54 55.6
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 2.9e-06 56.2 43 60.5


User provided reference genes

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