Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006045 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 3.7e-59 231.5 129 100.0
CSS0013260 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 1.9e-39 166.0 117 80.3
CSS0032829 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 1.9e-39 166.0 117 80.3
CSS0000926 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 2.5e-31 139.0 129 65.1
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 3.6e-30 135.2 129 64.3
Rhsim05G0188300 Rhododendron simsii HOM05D001886 ORTHO05D004007 4.1e-26 121.7 123 61.0
CSS0007004 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 5.4e-26 121.3 125 59.2
CSS0016629 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 5.4e-26 121.3 125 59.2
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 1.7e-24 116.3 124 54.0
Hma1.2p1_1481F.1_g286140 Hydrangea macrophylla HOM05D001886 ORTHO05D004007 7.3e-23 110.9 102 63.7
Hma1.2p1_1707F.1_g298490 Hydrangea macrophylla HOM05D001886 ORTHO05D004007 2.1e-22 109.4 102 62.7
TAR623G0309 Trochodendron aralioides HOM05D001886 ORTHO05D004007 2.1e-22 109.4 127 53.5
CiPaw.09G189700 Carya illinoinensis HOM05D001886 ORTHO05D004007 2.3e-21 105.9 125 52.8
HanXRQChr13g0398891 Helianthus annuus HOM05D001886 ORTHO05D004007 1.2e-20 103.6 126 50.0
MBI14_g24316_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D004007 1.5e-20 103.2 127 50.4
Manes.09G087200 Manihot esculenta HOM05D001886 ORTHO05D004007 3.4e-20 102.1 120 51.7
Prupe.6G251200 Prunus persica HOM05D001886 ORTHO05D004007 3.4e-20 102.1 123 50.4
Migut.J00350 Erythranthe guttata HOM05D001886 ORTHO05D004007 4.4e-20 101.7 103 53.4
Lsat_1_v5_gn_6_31360 Lactuca sativa HOM05D001886 ORTHO05D004007 4.4e-20 101.7 121 48.8
Prupe.6G081800 Prunus persica HOM05D001886 ORTHO05D004007 1.3e-19 100.1 120 50.8
PGSC0003DMG400008923 Solanum tuberosum HOM05D001886 ORTHO05D004007 1.3e-19 100.1 129 46.5
SalBow4G1303 Salvia bowleyana HOM05D001886 ORTHO05D004007 1.7e-19 99.8 121 50.4
SalBow4G2596 Salvia bowleyana HOM05D001886 ORTHO05D004007 1.7e-19 99.8 100 56.0
QL05p010714 Quercus lobata HOM05D001886 ORTHO05D004007 2.2e-19 99.4 122 50.8
QL07p047484 Quercus lobata HOM05D001886 ORTHO05D004007 2.2e-19 99.4 122 50.8
Actinidia05303 Actinidia chinensis HOM05D001886 ORTHO05D004007 2.9e-19 99.0 110 58.2
CiPaw.13G097900 Carya illinoinensis HOM05D001886 ORTHO05D004007 2.9e-19 99.0 120 47.5
MD04G1123500 Malus domestica HOM05D001886 ORTHO05D004007 3.7e-19 98.6 123 48.8
Ciclev10013572m.g Citrus clementina HOM05D001886 ORTHO05D004007 6.4e-19 97.8 129 47.3
Duzib093G1578 Durio zibethinus HOM05D001886 ORTHO05D004007 8.3e-19 97.4 123 51.2
ECA233G1369 Erigeron canadensis HOM05D001886 ORTHO05D004007 8.3e-19 97.4 112 50.9
Sopen09g005220 Solanum pennellii HOM05D001886 ORTHO05D004007 8.3e-19 97.4 129 45.0
SGA_v2.0_scaffold126G33809 Striga asiatica HOM05D001886 ORTHO05D004007 8.3e-19 97.4 104 52.9
Gohir.D09G153200 Gossypium hirsutum HOM05D001886 ORTHO05D004007 1.1e-18 97.1 123 50.4
Lj3P970T51 Lonicera japonica HOM05D001886 ORTHO05D004007 1.1e-18 97.1 101 57.4
Solyc09g010480.1 Solanum lycopersicum HOM05D001886 ORTHO05D004007 1.1e-18 97.1 129 45.7
Gorai.006G174700 Gossypium raimondii HOM05D001886 ORTHO05D004007 1.4e-18 96.7 123 50.4
COL.COLO4_14848 Corchorus olitorius HOM05D001886 ORTHO05D004007 1.8e-18 96.3 123 50.4
Thecc.05G043600 Theobroma cacao HOM05D001886 ORTHO05D004007 1.8e-18 96.3 129 50.4
Nn2g12929 Nelumbo nucifera HOM05D001886 ORTHO05D004007 2.4e-18 95.9 101 55.4
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 3.2e-18 95.5 97 55.7
MD12G1139400 Malus domestica HOM05D001886 ORTHO05D004007 4.1e-18 95.1 100 51.0
Nn2g10427 Nelumbo nucifera HOM05D001886 ORTHO05D004007 4.1e-18 95.1 100 57.0
FvH4_3g35450 Fragaria vesca HOM05D001886 ORTHO05D004007 5.4e-18 94.7 125 47.2
Sabra06G0063400 Salix brachista HOM05D001886 ORTHO05D004007 5.4e-18 94.7 100 56.0
CsaV3_4G024780 Cucumis sativus L. HOM05D001886 ORTHO05D004007 7.0e-18 94.4 102 51.0
Gohir.A09G157900 Gossypium hirsutum HOM05D001886 ORTHO05D004007 7.0e-18 94.4 123 48.8
MELO3C003112.2 Cucumis melo HOM05D001886 ORTHO05D004007 9.2e-18 94.0 103 51.5
Aqoxy2G02038 Aquilegia oxysepala HOM05D001886 ORTHO05D004007 1.6e-17 93.2 120 48.3
FAN16G1011 Fragaria x ananassa HOM05D001886 ORTHO05D004007 1.6e-17 93.2 123 48.0
MD03G1097600 Malus domestica HOM05D001886 ORTHO05D004007 1.6e-17 93.2 120 47.5
DCAR_009245 Daucus carota HOM05D001886 ORTHO05D004007 2.0e-17 92.8 122 51.6
Lj1g0019269 Lotus japonicus HOM05D001886 ORTHO05D004007 2.7e-17 92.4 104 51.0
Potri.006G083800 Populus trichocarpa HOM05D001886 ORTHO05D004007 2.7e-17 92.4 118 50.8
FAN11G3942 Fragaria x ananassa HOM05D001886 ORTHO05D004007 3.5e-17 92.0 104 51.0
Eucgr.A01246 Eucalyptus grandis HOM05D001886 ORTHO05D004007 5.9e-17 91.3 124 48.4
Lj1g0006648 Lotus japonicus HOM05D001886 ORTHO05D004007 5.9e-17 91.3 104 51.0
PGR004G0749 Punica granatum HOM05D001886 ORTHO05D004007 5.9e-17 91.3 103 53.4
TWI74G0754 Tripterygium wilfordii HOM05D001886 ORTHO05D004007 5.9e-17 91.3 124 45.2
Haze_20751 Corylus avellana HOM05D001886 ORTHO05D004007 1.0e-16 90.5 118 47.5
FAN21G2352 Fragaria x ananassa HOM05D001886 ORTHO05D004007 1.0e-16 90.5 123 46.3
FAN25G1849 Fragaria x ananassa HOM05D001886 ORTHO05D004007 1.0e-16 90.5 102 52.0
Duzib150G0204 Durio zibethinus HOM05D001886 ORTHO05D004007 1.3e-16 90.1 121 46.3
Nitab4.5_0002077g0050 Nicotiana tabacum HOM05D001886 ORTHO05D004007 1.3e-16 90.1 122 47.5
ClCG04G008370 Citrullus lanatus HOM05D001886 ORTHO05D004007 1.7e-16 89.7 100 51.0
Lalb_Chr01g0019251 Lupinus albus HOM05D001886 ORTHO05D004007 1.7e-16 89.7 118 48.3
Glyma.19G172900 Glycine max HOM05D001886 ORTHO05D004007 2.3e-16 89.4 122 45.9
Phvul.001G169700 Phaseolus vulgaris HOM05D001886 ORTHO05D004007 2.3e-16 89.4 98 53.1
TAR636G3006 Trochodendron aralioides HOM05D001886 ORTHO05D004007 3.0e-16 89.0 97 53.6
CiPaw.09G189600 Carya illinoinensis HOM05D001886 ORTHO05D004007 3.9e-16 88.6 106 50.0
Nitab4.5_0003267g0060 Nicotiana tabacum HOM05D001886 ORTHO05D004007 3.9e-16 88.6 112 49.1
Aa31LG5G22950 Aethionema arabicum HOM05D001886 ORTHO05D004007 6.6e-16 87.8 120 43.3
Cfa017419 Carpinus fangiana HOM05D001886 ORTHO05D004007 6.6e-16 87.8 96 51.0
RcHm_v2.0_Chr5g0063581 Rosa chinensis HOM05D001886 ORTHO05D004007 6.6e-16 87.8 116 46.6
COL.COLO4_18467 Corchorus olitorius HOM05D001886 ORTHO05D004007 1.5e-15 86.7 119 42.9
FAN14G5259 Fragaria x ananassa HOM05D001886 ORTHO05D004007 1.5e-15 86.7 123 46.3
Gohir.D07G100500 Gossypium hirsutum HOM05D001886 ORTHO05D004007 1.5e-15 86.7 99 48.5
Gorai.001G108400 Gossypium raimondii HOM05D001886 ORTHO05D004007 1.5e-15 86.7 99 48.5
FvH4_6g14180 Fragaria vesca HOM05D001886 ORTHO05D004007 1.9e-15 86.3 123 46.3
FAN05G2305 Fragaria x ananassa HOM05D001886 ORTHO05D004007 1.9e-15 86.3 123 46.3
FAN09G0249 Fragaria x ananassa HOM05D001886 ORTHO05D004007 2.5e-15 85.9 123 46.3
Medtr7g099860 Medicago truncatula HOM05D001886 ORTHO05D004007 2.5e-15 85.9 95 51.6
BraA03t11311Z Brassica rapa HOM05D001886 ORTHO05D004007 3.3e-15 85.5 126 46.8
RcHm_v2.0_Chr3g0467161 Rosa chinensis HOM05D001886 ORTHO05D004007 3.3e-15 85.5 123 45.5
AT2G37530 Arabidopsis thaliana HOM05D001886 ORTHO05D004007 5.6e-15 84.7 102 49.0
Glyma.03G172000 Glycine max HOM05D001886 ORTHO05D004007 5.6e-15 84.7 122 44.3
Ciclev10030058m.g Citrus clementina HOM05D001886 ORTHO05D004007 7.3e-15 84.3 97 49.5
Psat3g049240 Pisum sativum HOM05D001886 ORTHO05D004007 7.3e-15 84.3 95 48.4
Actinidia26440 Actinidia chinensis HOM05D001886 ORTHO05D004007 9.5e-15 84.0 86 59.3
BcaB01g03772 Brassica carinata HOM05D001886 ORTHO05D004007 9.5e-15 84.0 126 45.2
BcaC01g05612 Brassica carinata HOM05D001886 ORTHO05D004007 9.5e-15 84.0 126 46.0
C03p24330 Brassica napus HOM05D001886 ORTHO05D004007 9.5e-15 84.0 126 46.0
CARHR132080 Cardamine hirsuta HOM05D001886 ORTHO05D004007 9.5e-15 84.0 122 44.3
Cfa011462 Carpinus fangiana HOM05D001886 ORTHO05D004007 9.5e-15 84.0 120 44.2
Sp4g19850 Schrenkiella parvula HOM05D001886 ORTHO05D004007 9.5e-15 84.0 122 44.3
A03p20700 Brassica napus HOM05D001886 ORTHO05D004007 1.2e-14 83.6 126 46.0
BolC3t14831H Brassica oleracea HOM05D001886 ORTHO05D004007 1.2e-14 83.6 126 46.0
Cpa.g.sc188.23 Carica papaya HOM05D001886 ORTHO05D004007 1.2e-14 83.6 122 42.6
MELO3C013683.2 Cucumis melo HOM05D001886 ORTHO05D004007 1.2e-14 83.6 94 50.0
Gohir.A07G096100 Gossypium hirsutum HOM05D001886 ORTHO05D004007 1.2e-14 83.6 96 49.0
Haze_24047 Corylus avellana HOM05D001886 ORTHO05D004007 1.6e-14 83.2 120 45.0
THA.LOC104823422 Tarenaya hassleriana HOM05D001886 ORTHO05D004007 1.6e-14 83.2 135 43.0
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 2.1e-14 82.8 122 45.1
CiPaw.10G143600 Carya illinoinensis HOM05D001886 ORTHO05D004007 2.1e-14 82.8 125 48.0
Lj5g0001892 Lotus japonicus HOM05D001886 ORTHO05D004007 2.1e-14 82.8 103 49.5
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 2.8e-14 82.4 122 45.1
Carub.0004s1945 Capsella rubella HOM05D001886 ORTHO05D004007 3.6e-14 82.0 134 42.5
AUR62041758 Chenopodium quinoa HOM05D001886 ORTHO05D004007 3.6e-14 82.0 118 42.4
Gohir.D03G128600 Gossypium hirsutum HOM05D001886 ORTHO05D004007 4.7e-14 81.6 116 42.2
Thhalv10017427m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 6.2e-14 81.3 126 44.4
Gorai.003G135300 Gossypium raimondii HOM05D001886 ORTHO05D004007 6.2e-14 81.3 116 42.2
Psat3g049080 Pisum sativum HOM05D001886 ORTHO05D004007 6.2e-14 81.3 90 50.0
CANSAT35G1619 Cannabis sativa HOM05D001886 ORTHO05D004007 8.0e-14 80.9 99 50.5
Ah.01g020040 Amaranthus hybridus HOM05D001886 ORTHO05D004007 1.4e-13 80.1 119 42.9
AL4G34020 Arabidopsis lyrata HOM05D001886 ORTHO05D004007 1.4e-13 80.1 104 49.0
TPR.G21449 Trifolium pratense HOM05D001886 ORTHO05D004007 1.8e-13 79.7 95 46.3
Thecc.09G325900 Theobroma cacao HOM05D001886 ORTHO05D004007 3.1e-13 79.0 120 40.8
CANSAT01G0239 Cannabis sativa HOM05D001886 ORTHO05D004007 8.9e-13 77.4 97 49.5
AUR62041036 Chenopodium quinoa HOM05D001886 ORTHO05D004007 1.2e-12 77.0 118 40.7
ClCG02G020370 Citrullus lanatus HOM05D001886 ORTHO05D004007 1.5e-12 76.6 93 47.3
VMungo1383G2619 Vigna mungo HOM05D001886 ORTHO05D004007 2.0e-12 76.3 122 40.2
Ca_08781_v3 Cicer arietinum L. HOM05D001886 ORTHO05D004007 3.4e-12 75.5 95 46.3
Lalb_Chr06g0171021 Lupinus albus HOM05D001886 ORTHO05D004007 3.4e-12 75.5 121 43.0
CsaV3_6G022260 Cucumis sativus L. HOM05D001886 ORTHO05D004007 9.8e-12 73.9 98 43.9
PSO339G5886 Papaver somniferum HOM05D001886 ORTHO05D004007 1.3e-11 73.6 105 43.8
Sc12g0001630 Simmondsia chinensis HOM05D001886 ORTHO05D004007 1.3e-11 73.6 115 42.6
Hund04991 Selenicereus undatus HOM05D000437 ORTHO05D000324 1.7e-11 73.2 94 41.5
HPP92_018051 Vanilla planifolia HOM05D001886 ORTHO05D004007 1.7e-11 73.2 100 47.0
HPP92_018060 Vanilla planifolia HOM05D001886 ORTHO05D004007 1.7e-11 73.2 100 47.0
ATR0723G053 Amborella trichopoda HOM05D001886 ORTHO05D004007 2.9e-11 72.4 96 47.9
Actinidia11249 Actinidia chinensis HOM05D001886 ORTHO05D004007 3.7e-11 72.0 97 52.6
Sed0021579 Sechium edule HOM05D001886 ORTHO05D004007 1.4e-10 70.1 120 40.0
Glyma.10G043800 Glycine max HOM05D001886 ORTHO05D004007 2.4e-10 69.3 115 42.6
Sc20g0004970 Simmondsia chinensis HOM05D001886 ORTHO05D004007 2.4e-10 69.3 95 47.4
HPP92_006604 Vanilla planifolia HOM05D001886 ORTHO05D004007 2.4e-10 69.3 100 43.0
Atru.chr3.3836 Acer truncatum HOM05D001886 ORTHO05D004007 3.2e-10 68.9 95 48.4
Lj3g0013632 Lotus japonicus HOM05D001886 ORTHO05D004007 5.4e-10 68.2 118 39.0
THA.LOC104800648 Tarenaya hassleriana HOM05D001886 ORTHO05D004007 7.0e-10 67.8 89 47.2
Sed0011835 Sechium edule HOM05D001886 ORTHO05D004007 9.2e-10 67.4 94 42.6
Glyma.13G131500 Glycine max HOM05D001886 ORTHO05D004007 1.6e-09 66.6 117 41.9
SalBow3G1052 Salvia bowleyana HOM05D001886 ORTHO05D004007 2.0e-09 66.2 78 47.4
AUR62036093 Chenopodium quinoa HOM05D001886 ORTHO05D004007 2.7e-09 65.9 94 42.6
Phvul.007G157600 Phaseolus vulgaris HOM05D001886 ORTHO05D004007 3.5e-09 65.5 121 39.7
Zm00001eb124260 Zea mays HOM05D001886 ORTHO05D004007 4.6e-09 65.1 110 41.8
VMungo0720G0839 Vigna mungo HOM05D001886 ORTHO05D004007 2.3e-08 62.8 116 38.8
C05p05710 Brassica napus HOM05D001886 ORTHO05D004007 3.9e-08 62.0 98 43.9
Hma1.2p1_0624F.1_g191360 Hydrangea macrophylla HOM05D001886 ORTHO05D004007 3.9e-08 62.0 123 32.5
PGR142G2414 Punica granatum HOM05D001886 ORTHO05D004007 5.0e-08 61.6 97 41.2
BolC5t29341H Brassica oleracea HOM05D001886 ORTHO05D015777 6.6e-08 61.2 98 43.9
BcaC02g08141 Brassica carinata HOM05D001886 ORTHO05D004007 8.6e-08 60.8 89 44.9
C04p57930 Brassica napus HOM05D001886 ORTHO05D004007 8.6e-08 60.8 89 44.9
BolC4t27319H Brassica oleracea HOM05D001886 ORTHO05D004007 8.6e-08 60.8 89 44.9
Glyma.13G334000 Glycine max HOM05D001886 ORTHO05D004007 8.6e-08 60.8 115 39.1
BcaB02g06704 Brassica carinata HOM05D001886 ORTHO05D004007 1.1e-07 60.5 102 41.2
Thhalv10017464m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 1.5e-07 60.1 91 45.1
BcaB06g28246 Brassica carinata HOM05D001886 ORTHO05D004007 2.5e-07 59.3 89 41.6
A04p21800 Brassica napus HOM05D001886 ORTHO05D004007 2.5e-07 59.3 92 42.4
Thhalv10022483m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 2.5e-07 59.3 126 39.7
BraA04t17747Z Brassica rapa HOM05D001886 ORTHO05D004007 3.3e-07 58.9 88 44.3
AL1G18080 Arabidopsis lyrata HOM05D001886 ORTHO05D004007 4.3e-07 58.5 98 42.9
BcaC07g42494 Brassica carinata HOM05D001886 ORTHO05D004007 4.3e-07 58.5 97 42.3
BraA09t41960Z Brassica rapa HOM05D001886 ORTHO05D004007 4.3e-07 58.5 97 42.3
Lalb_Chr20g0113261 Lupinus albus HOM05D001886 ORTHO05D004007 4.3e-07 58.5 81 43.2
A09p66220 Brassica napus HOM05D001886 ORTHO05D004007 5.6e-07 58.2 97 42.3
Cpa.g.sc190.15 Carica papaya HOM05D001886 ORTHO05D004007 5.6e-07 58.2 92 40.2
AT1G07795 Arabidopsis thaliana HOM05D001886 ORTHO05D004007 7.3e-07 57.8 98 42.9
Gohir.A03G039500 Gossypium hirsutum HOM05D001886 ORTHO05D004007 7.3e-07 57.8 76 42.1
Sp4g11590 Schrenkiella parvula HOM05D001886 ORTHO05D004007 9.5e-07 57.4 91 41.8
Thhalv10009977m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 1.2e-06 57.0 89 42.7
Pp3c26_1460 Physcomitrium patens HOM05D001886 ORTHO05D004007 2.1e-06 56.2 105 36.2
A03p26260 Brassica napus HOM05D001886 ORTHO05D004007 3.6e-06 55.5 96 40.6
BraA03t11840Z Brassica rapa HOM05D001886 ORTHO05D004007 3.6e-06 55.5 96 40.6
BcaC01g04990 Brassica carinata HOM05D001886 ORTHO05D004007 4.7e-06 55.1 90 42.2
C03p31370 Brassica napus HOM05D001886 ORTHO05D004007 4.7e-06 55.1 90 42.2
Lalb_Chr03g0026781 Lupinus albus HOM05D001886 ORTHO05D004007 6.2e-06 54.7 117 37.6
BolC3t15485H Brassica oleracea HOM05D001886 ORTHO05D004007 8.1e-06 54.3 90 41.1
CARHR007610 Cardamine hirsuta HOM05D001886 ORTHO05D004007 8.1e-06 54.3 89 41.6


User provided reference genes

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