Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006042 Camellia sinensis var. sinensis HOM05D002533 ORTHO05D002855 3.2e-27 124.4 66 100.0
Actinidia36969 Actinidia chinensis HOM05D002533 ORTHO05D002855 1.4e-17 92.4 56 76.8
Actinidia27166 Actinidia chinensis HOM05D002533 ORTHO05D002855 4.0e-17 90.9 55 76.4
Actinidia08498 Actinidia chinensis HOM05D002533 ORTHO05D002855 8.9e-17 89.7 56 75.0
Dinv13983 Davidia involucrata HOM05D002533 ORTHO05D002855 4.1e-14 80.9 56 75.0
Potri.010G089200 Populus trichocarpa HOM05D002533 ORTHO05D002855 9.2e-14 79.7 56 69.6
Sabra10G0054100 Salix brachista HOM05D002533 ORTHO05D002855 9.2e-14 79.7 56 69.6
Potri.008G151800 Populus trichocarpa HOM05D002533 ORTHO05D002855 1.6e-13 79.0 56 69.6
Manes.15G028000 Manihot esculenta HOM05D002533 ORTHO05D002855 7.8e-13 76.6 56 67.9
Dinv44518 Davidia involucrata HOM05D002533 ORTHO05D002855 1.0e-12 76.3 60 71.7
MD16G1191600 Malus domestica HOM05D002533 ORTHO05D002855 3.9e-12 74.3 56 76.8
Cc03_g03610 Coffea canephora HOM05D002533 ORTHO05D002855 2.5e-11 71.6 56 67.9
Eucgr.H03531 Eucalyptus grandis HOM05D002533 ORTHO05D002855 2.5e-11 71.6 56 67.9
MD13G1191500 Malus domestica HOM05D002533 ORTHO05D002855 3.3e-11 71.2 62 69.4
TWI09G1165 Tripterygium wilfordii HOM05D002533 ORTHO05D002855 3.3e-11 71.2 57 66.7
TWI53G0823 Tripterygium wilfordii HOM05D002533 ORTHO05D002855 4.3e-11 70.9 57 64.9
Lalb_Chr02g0140551 Lupinus albus HOM05D002533 ORTHO05D002855 5.6e-11 70.5 57 64.9
Sabra08G0115600 Salix brachista HOM05D002533 ORTHO05D002855 7.3e-11 70.1 56 66.1
Duzib052G1080 Durio zibethinus HOM05D002533 ORTHO05D002855 1.2e-10 69.3 56 67.9
Haze_00915 Corylus avellana HOM05D002533 ORTHO05D002855 1.6e-10 68.9 56 66.1
QL06p002973 Quercus lobata HOM05D002533 ORTHO05D002855 1.6e-10 68.9 56 66.1
CAN.G907.12 Capsicum annuum HOM05D002533 ORTHO05D002855 2.1e-10 68.6 56 62.5
Peaxi162Scf00092g01413 Petunia axillaris HOM05D002533 ORTHO05D002855 2.1e-10 68.6 56 60.7
GSVIVG01017948001 Vitis vinifera HOM05D002533 ORTHO05D002855 2.1e-10 68.6 56 64.3
Thecc.04G229300 Theobroma cacao HOM05D002533 ORTHO05D002855 3.6e-10 67.8 56 66.1
Cpa.g.sc58.122 Carica papaya HOM05D002533 ORTHO05D002855 1.0e-09 66.2 56 66.1
Lj5g0016747 Lotus japonicus HOM05D002533 ORTHO05D002855 1.0e-09 66.2 56 60.7
Prupe.1G011700 Prunus persica HOM05D002533 ORTHO05D002855 1.0e-09 66.2 62 71.0
Psat4g210760 Pisum sativum HOM05D002533 ORTHO05D002855 1.4e-09 65.9 56 60.7
TPR.G37869 Trifolium pratense HOM05D002533 ORTHO05D002855 1.8e-09 65.5 56 60.7
Glyma.10G248800 Glycine max HOM05D002533 ORTHO05D002855 2.3e-09 65.1 56 60.7
Glyma.20G145000 Glycine max HOM05D002533 ORTHO05D002855 2.3e-09 65.1 56 60.7
Phvul.007G056100 Phaseolus vulgaris HOM05D002533 ORTHO05D002855 2.3e-09 65.1 56 60.7
PGR004G0118 Punica granatum HOM05D002533 ORTHO05D002855 2.3e-09 65.1 34 79.4
Rhsim04G0206500 Rhododendron simsii HOM05D002533 ORTHO05D002855 2.3e-09 65.1 57 63.2
Atru.chr4.2497 Acer truncatum HOM05D002533 ORTHO05D002855 3.1e-09 64.7 56 62.5
TAR362G0781 Trochodendron aralioides HOM05D002533 ORTHO05D002855 3.1e-09 64.7 34 79.4
CiPaw.01G165000 Carya illinoinensis HOM05D002533 ORTHO05D002855 4.0e-09 64.3 56 64.3
VMungo0720G0384 Vigna mungo HOM05D002533 ORTHO05D002855 4.0e-09 64.3 58 63.8
FAN07G1266 Fragaria x ananassa HOM05D002533 ORTHO05D002855 5.2e-09 63.9 34 76.5
Medtr5g006140 Medicago truncatula HOM05D002533 ORTHO05D002855 5.2e-09 63.9 37 78.4
Aqoxy2G03371 Aquilegia oxysepala HOM05D002533 ORTHO05D002855 6.8e-09 63.5 48 75.0
MSTRG.4024 Avicennia marina HOM05D002533 ORTHO05D002855 6.8e-09 63.5 56 60.7
FAN22G1222 Fragaria x ananassa HOM05D002533 ORTHO05D002855 6.8e-09 63.5 66 60.6
CANSAT78G1827 Cannabis sativa HOM05D002533 ORTHO05D002855 8.9e-09 63.2 51 72.5
Sc19g0004240 Simmondsia chinensis HOM05D002533 ORTHO05D002855 1.2e-08 62.8 50 60.0
Ca_24393_v3 Cicer arietinum L. HOM05D002533 ORTHO05D002855 1.5e-08 62.4 56 67.9
arahy.Tifrunner.gnm1.ann1.5X5R33 Arachis hypogaea HOM05D002533 ORTHO05D002855 2.6e-08 61.6 32 84.4
arahy.Tifrunner.gnm1.ann1.94CY91 Arachis hypogaea HOM05D002533 ORTHO05D002855 2.6e-08 61.6 32 84.4
arahy.Tifrunner.gnm1.ann1.PVFB8V Arachis hypogaea HOM05D002533 ORTHO05D002855 2.6e-08 61.6 32 84.4
arahy.Tifrunner.gnm1.ann1.ST9KYG Arachis hypogaea HOM05D002533 ORTHO05D002855 2.6e-08 61.6 32 84.4
arahy.Tifrunner.gnm1.ann1.WKN0A4 Arachis hypogaea HOM05D002533 ORTHO05D002855 2.6e-08 61.6 32 84.4
Hma1.2p1_0745F.1_g212000 Hydrangea macrophylla HOM05D002533 ORTHO05D002855 3.4e-08 61.2 56 66.1
Nitab4.5_0002946g0040 Nicotiana tabacum HOM05D002533 ORTHO05D002855 3.4e-08 61.2 56 58.9
FvH4_4g15320 Fragaria vesca HOM05D002533 ORTHO05D002855 4.4e-08 60.8 66 62.1
FAN12G2098 Fragaria x ananassa HOM05D002533 ORTHO05D002855 4.4e-08 60.8 66 62.1
COL.COLO4_34231 Corchorus olitorius HOM05D002533 ORTHO05D002855 5.8e-08 60.5 56 62.5
FAN17G0826 Fragaria x ananassa HOM05D002533 ORTHO05D002855 5.8e-08 60.5 30 83.3
Ciclev10005374m.g Citrus clementina HOM05D002533 ORTHO05D002855 9.8e-08 59.7 56 57.1
Sed0025383 Sechium edule HOM05D002533 ORTHO05D002855 9.8e-08 59.7 29 86.2
CsaV3_3G013410 Cucumis sativus L. HOM05D002533 ORTHO05D002855 1.3e-07 59.3 56 58.9
Lj3C738T14 Lonicera japonica HOM05D002533 ORTHO05D002855 1.3e-07 59.3 56 60.7
ECA234G4047 Erigeron canadensis HOM05D002533 ORTHO05D002855 2.2e-07 58.5 36 72.2
HanXRQChr10g0296421 Helianthus annuus HOM05D002533 ORTHO05D002855 2.2e-07 58.5 58 56.9
Sed0011327 Sechium edule HOM05D002533 ORTHO05D002855 2.2e-07 58.5 56 58.9
ClCG05G005220 Citrullus lanatus HOM05D002533 ORTHO05D002855 2.9e-07 58.2 56 55.4
MELO3C006538.2 Cucumis melo HOM05D002533 ORTHO05D002855 2.9e-07 58.2 56 57.1
RcHm_v2.0_Chr4g0416531 Rosa chinensis HOM05D002533 ORTHO05D002855 2.9e-07 58.2 29 82.8
CiPaw.02G096300 Carya illinoinensis HOM05D002533 ORTHO05D002855 3.7e-07 57.8 34 73.5
SGA_v2.0_scaffold257G45725 Striga asiatica HOM05D002533 ORTHO05D002855 4.9e-07 57.4 57 59.6
Lsat_1_v5_gn_5_148780 Lactuca sativa HOM05D002533 ORTHO05D002855 6.4e-07 57.0 56 58.9
Nitab4.5_0000043g0300 Nicotiana tabacum HOM05D002533 ORTHO05D002855 6.4e-07 57.0 56 51.8
DCAR_027204 Daucus carota HOM05D002533 ORTHO05D002855 8.3e-07 56.6 58 56.9
arahy.Tifrunner.gnm1.ann1.EK8P71 Arachis hypogaea HOM05D002533 ORTHO05D002855 1.1e-06 56.2 33 75.8
MBI01_g45396_MAGBIO Magnolia biondii HOM05D002533 ORTHO05D002855 1.1e-06 56.2 56 57.1
Nn4g26294 Nelumbo nucifera HOM05D002533 ORTHO05D002855 1.1e-06 56.2 32 71.9
Solyc09g075900.3 Solanum lycopersicum HOM05D002533 ORTHO05D002855 1.1e-06 56.2 57 57.9
Sopen09g030700 Solanum pennellii HOM05D002533 ORTHO05D002855 1.1e-06 56.2 57 57.9
PGSC0003DMG400031835 Solanum tuberosum HOM05D002533 ORTHO05D002855 1.1e-06 56.2 57 57.9
DCAR_027208 Daucus carota HOM05D002533 ORTHO05D002855 2.4e-06 55.1 22 100.0
HanXRQChr10g0296441 Helianthus annuus HOM05D002533 ORTHO05D002855 2.4e-06 55.1 22 100.0
HPP92_017532 Vanilla planifolia HOM05D002533 ORTHO05D002855 5.4e-06 53.9 32 68.8
SalBow2G3342 Salvia bowleyana HOM05D002533 ORTHO05D002855 9.2e-06 53.1 56 51.8


User provided reference genes

Program Settings