Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.8e-57 225.7 116 100.0
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 2.8e-18 95.5 63 84.1
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 1.6e-16 89.7 59 84.7
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 2.0e-16 89.4 60 81.7
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 2.0e-16 89.4 59 84.7
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.5e-16 88.6 60 83.3
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.5e-16 88.6 60 83.3
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 4.5e-16 88.2 59 86.4
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 5.9e-16 87.8 59 81.4
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 5.9e-16 87.8 59 81.4
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 5.9e-16 87.8 59 83.1
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 5.9e-16 87.8 59 81.4
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 7.7e-16 87.4 59 84.7
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 7.7e-16 87.4 59 83.1
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 1.0e-15 87.0 59 81.4
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.0e-15 87.0 59 81.4
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 1.0e-15 87.0 60 81.7
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 1.3e-15 86.7 59 81.4
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 1.3e-15 86.7 59 83.1
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 1.7e-15 86.3 63 74.6
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 1.7e-15 86.3 59 81.4
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 1.7e-15 86.3 60 81.7
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.7e-15 86.3 60 81.7
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.7e-15 86.3 60 81.7
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.7e-15 86.3 60 81.7
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 1.7e-15 86.3 60 81.7
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 1.7e-15 86.3 60 80.0
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 2.2e-15 85.9 59 81.4
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 2.2e-15 85.9 59 83.1
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 2.2e-15 85.9 59 83.1
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 2.9e-15 85.5 59 79.7
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 2.9e-15 85.5 62 75.8
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 3.8e-15 85.1 64 71.9
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.8e-15 85.1 60 80.0
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 5.0e-15 84.7 62 75.8
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 5.0e-15 84.7 62 77.4
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 5.0e-15 84.7 59 81.4
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 5.0e-15 84.7 60 78.3
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 6.5e-15 84.3 59 79.7
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 8.5e-15 84.0 59 79.7
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 1.1e-14 83.6 59 79.7
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.1e-14 83.6 63 76.2
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.5e-14 83.2 59 79.7
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.5e-14 83.2 59 79.7
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.5e-14 83.2 59 78.0
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.9e-14 82.8 60 73.3
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.9e-14 82.8 60 73.3
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 2.5e-14 82.4 60 76.7
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 3.2e-14 82.0 62 77.4
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 3.2e-14 82.0 64 75.0
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 3.2e-14 82.0 65 70.8
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 4.2e-14 81.6 59 78.0
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 4.2e-14 81.6 60 78.3
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 4.2e-14 81.6 60 78.3
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 5.5e-14 81.3 59 76.3
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 5.5e-14 81.3 59 76.3
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 7.2e-14 80.9 58 79.3
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 7.2e-14 80.9 59 76.3
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 7.2e-14 80.9 80 63.8
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 7.2e-14 80.9 64 73.4
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 1.2e-13 80.1 67 67.2
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 1.2e-13 80.1 67 67.2
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 1.2e-13 80.1 64 75.0
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 1.6e-13 79.7 60 76.7
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.6e-13 79.7 92 54.3
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 1.6e-13 79.7 59 76.3
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 1.6e-13 79.7 60 71.7
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 2.1e-13 79.3 61 75.4
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 2.1e-13 79.3 60 75.0
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 2.1e-13 79.3 60 71.7
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 2.7e-13 79.0 59 76.3
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 2.7e-13 79.0 60 73.3
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 2.7e-13 79.0 61 73.8
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 2.7e-13 79.0 59 74.6
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 3.6e-13 78.6 60 73.3
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 3.6e-13 78.6 59 79.7
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 4.7e-13 78.2 60 73.3
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 6.1e-13 77.8 59 79.7
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 6.1e-13 77.8 59 79.7
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 6.1e-13 77.8 64 73.4
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 6.1e-13 77.8 60 75.0
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 8.0e-13 77.4 63 73.0
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 8.0e-13 77.4 58 79.3
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 8.0e-13 77.4 58 79.3
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 8.0e-13 77.4 64 67.2
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 8.0e-13 77.4 59 72.9
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 8.0e-13 77.4 59 78.0
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 8.0e-13 77.4 63 71.4
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 1.0e-12 77.0 60 73.3
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 1.0e-12 77.0 71 67.6
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.4e-12 76.6 63 71.4
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 1.4e-12 76.6 63 71.4
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 1.4e-12 76.6 63 71.4
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 1.4e-12 76.6 63 71.4
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.4e-12 76.6 63 71.4
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 1.4e-12 76.6 63 71.4
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 1.4e-12 76.6 60 75.0
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 1.4e-12 76.6 63 71.4
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.8e-12 76.3 63 69.8
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 1.8e-12 76.3 63 71.4
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 1.8e-12 76.3 63 71.4
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 1.8e-12 76.3 63 71.4
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 1.8e-12 76.3 63 71.4
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 1.8e-12 76.3 63 71.4
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 2.3e-12 75.9 59 74.6
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.3e-12 75.9 61 70.5
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.3e-12 75.9 61 70.5
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 2.3e-12 75.9 59 71.2
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 3.0e-12 75.5 63 68.3
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 3.0e-12 75.5 63 71.4
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 3.0e-12 75.5 63 71.4
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 3.0e-12 75.5 60 71.7
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 5.2e-12 74.7 63 71.4
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 5.2e-12 74.7 59 67.8
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 6.8e-12 74.3 63 68.3
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 6.8e-12 74.3 58 75.9
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 6.8e-12 74.3 59 71.2
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.2e-11 73.6 60 70.0
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 2.0e-11 72.8 61 67.2
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 2.0e-11 72.8 61 67.2
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 2.0e-11 72.8 60 66.7
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 2.6e-11 72.4 61 68.9
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 3.4e-11 72.0 61 63.9
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 4.4e-11 71.6 63 66.7
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 5.7e-11 71.2 59 67.8
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 5.7e-11 71.2 59 67.8
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 5.7e-11 71.2 66 65.2
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 5.7e-11 71.2 65 60.0
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 9.8e-11 70.5 60 68.3
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 9.8e-11 70.5 50 80.0
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 8.3e-10 67.4 63 66.7
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 1.4e-09 66.6 67 65.7
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 1.4e-09 66.6 67 65.7
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 5.4e-09 64.7 60 66.7
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.6e-08 63.2 60 58.3
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.6e-08 63.2 60 58.3
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 4.5e-08 61.6 91 49.5
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 5.9e-08 61.2 73 53.4
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.0e-07 60.5 55 69.1
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 2.3e-07 59.3 60 61.7
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 1.1e-06 57.0 45 68.9
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 1.1e-06 57.0 59 64.4


User provided reference genes

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