Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005997 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 1.6e-131 473.0 280 100.0
CSS0002349 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 1.7e-130 469.5 280 98.9
Rhsim09G0036800 Rhododendron simsii HOM05D006222 ORTHO05D007677 1.7e-93 346.7 275 69.1
Cfa008558 Carpinus fangiana HOM05D006222 ORTHO05D007677 5.0e-85 318.5 273 60.8
Cc03_g10460 Coffea canephora HOM05D006222 ORTHO05D007677 2.5e-84 316.2 204 77.0
DCAR_027540 Daucus carota HOM05D006222 ORTHO05D007677 4.2e-84 315.5 216 72.2
GSVIVG01031673001 Vitis vinifera HOM05D006222 ORTHO05D007677 3.6e-83 312.4 210 71.9
Oeu034479.1 Olea europaea HOM05D006222 ORTHO05D007677 4.7e-83 312.0 214 72.0
SGA_v2.0_scaffold31G12583 Striga asiatica HOM05D006222 ORTHO05D007677 1.1e-81 307.4 212 71.2
Hund13303 Selenicereus undatus HOM05D006222 ORTHO05D007677 1.5e-81 307.0 284 57.7
CANSAT78G1479 Cannabis sativa HOM05D006222 ORTHO05D007677 2.8e-80 302.8 270 60.4
Ciclev10021532m.g Citrus clementina HOM05D006222 ORTHO05D007677 2.8e-80 302.8 203 74.9
EL10Ac5g11641 Beta vulgaris HOM05D006222 ORTHO05D007677 3.7e-80 302.4 210 70.5
CiPaw.02G058300 Carya illinoinensis HOM05D006222 ORTHO05D007677 3.7e-80 302.4 282 58.9
Prupe.1G180600 Prunus persica HOM05D006222 ORTHO05D007677 1.1e-79 300.8 283 62.2
Atru.chr3.1674 Acer truncatum HOM05D006222 ORTHO05D007677 1.4e-79 300.4 204 73.0
Dinv22662 Davidia involucrata HOM05D006222 ORTHO05D007677 1.4e-79 300.4 253 77.1
TAR362G1090 Trochodendron aralioides HOM05D006222 ORTHO05D007677 2.4e-79 299.7 276 59.4
Actinidia32943 Actinidia chinensis HOM05D006222 ORTHO05D007677 1.2e-78 297.4 187 77.0
SalBow3G0382 Salvia bowleyana HOM05D006222 ORTHO05D007677 5.9e-78 295.0 210 70.5
THA.LOC104804896 Tarenaya hassleriana HOM05D006222 ORTHO05D007677 7.7e-78 294.7 207 67.1
COL.COLO4_07298 Corchorus olitorius HOM05D006222 ORTHO05D007677 1.7e-77 293.5 275 62.9
PGSC0003DMG400013073 Solanum tuberosum HOM05D006222 ORTHO05D007677 8.5e-77 291.2 211 70.6
Lj3P863T15 Lonicera japonica HOM05D006222 ORTHO05D007677 1.5e-76 290.4 205 70.7
Migut.N00436 Erythranthe guttata HOM05D006222 ORTHO05D007677 1.9e-76 290.0 216 66.7
HanXRQChr14g0432081 Helianthus annuus HOM05D006222 ORTHO05D007677 2.5e-76 289.7 203 68.5
Manes.11G113101 Manihot esculenta HOM05D006222 ORTHO05D007677 5.5e-76 288.5 203 68.0
Aqoxy5G00038 Aquilegia oxysepala HOM05D006222 ORTHO05D007677 1.2e-75 287.3 213 67.6
MD04G1034000 Malus domestica HOM05D006222 ORTHO05D007677 1.2e-75 287.3 300 56.0
RcHm_v2.0_Chr4g0409281 Rosa chinensis HOM05D006222 ORTHO05D007677 1.2e-75 287.3 197 71.1
Duzib268G0300 Durio zibethinus HOM05D006222 ORTHO05D007677 1.6e-75 287.0 284 65.1
Sopen05g032350 Solanum pennellii HOM05D006222 ORTHO05D007677 2.1e-75 286.6 211 68.7
Gohir.A10G136100 Gossypium hirsutum HOM05D006222 ORTHO05D007677 2.7e-75 286.2 279 65.2
ClCG07G016700 Citrullus lanatus HOM05D006222 ORTHO05D007677 3.6e-75 285.8 211 65.9
CsaV3_4G003830 Cucumis sativus L. HOM05D006222 ORTHO05D007677 3.6e-75 285.8 271 55.0
Eucgr.A00219 Eucalyptus grandis HOM05D006222 ORTHO05D007677 4.7e-75 285.4 209 65.1
Gorai.011G144300 Gossypium raimondii HOM05D006222 ORTHO05D007677 4.7e-75 285.4 206 66.5
Hma1.2p1_1477F.1_g285900 Hydrangea macrophylla HOM05D006222 ORTHO05D007677 4.7e-75 285.4 182 76.4
TWI63G0082 Tripterygium wilfordii HOM05D006222 ORTHO05D007677 1.0e-74 284.3 280 55.4
Sp4g25240 Schrenkiella parvula HOM05D006222 ORTHO05D007677 1.4e-74 283.9 252 58.3
Thhalv10017033m.g Eutrema salsugineum HOM05D006222 ORTHO05D007677 1.8e-74 283.5 209 65.1
Sabra14G0113700 Salix brachista HOM05D006222 ORTHO05D007677 1.8e-74 283.5 237 59.9
Sc07g0007090 Simmondsia chinensis HOM05D006222 ORTHO05D007677 3.0e-74 282.7 207 66.7
Gohir.D10G130500 Gossypium hirsutum HOM05D006222 ORTHO05D007677 3.9e-74 282.3 206 66.0
BcaC02g12413 Brassica carinata HOM05D006222 ORTHO05D007677 6.7e-74 281.6 257 56.0
Lalb_Chr06g0164621 Lupinus albus HOM05D006222 ORTHO05D007677 6.7e-74 281.6 198 69.7
Carub.0004s2559 Capsella rubella HOM05D006222 ORTHO05D007677 8.8e-74 281.2 204 67.6
C04p04200 Brassica napus HOM05D006222 ORTHO05D007677 1.5e-73 280.4 209 64.1
BolC4t22057H Brassica oleracea HOM05D006222 ORTHO05D007677 1.5e-73 280.4 209 64.1
BraA05t19346Z Brassica rapa HOM05D006222 ORTHO05D007677 1.5e-73 280.4 209 64.1
CDE05G0624 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 1.5e-73 280.4 208 63.9
Aa31LG1G24920 Aethionema arabicum HOM05D006222 ORTHO05D007677 2.0e-73 280.0 223 62.3
Thecc.04G181000 Theobroma cacao HOM05D006222 ORTHO05D007677 2.0e-73 280.0 286 58.4
PSO357G0657 Papaver somniferum HOM05D006222 ORTHO05D007677 4.4e-73 278.9 208 68.3
A05p03600 Brassica napus HOM05D006222 ORTHO05D007677 5.7e-73 278.5 257 58.0
MSTRG.24605 Avicennia marina HOM05D006222 ORTHO05D007677 7.4e-73 278.1 205 67.3
CARHR138180 Cardamine hirsuta HOM05D006222 ORTHO05D007677 1.7e-72 276.9 212 63.7
Sed0019288 Sechium edule HOM05D006222 ORTHO05D007677 2.2e-72 276.6 211 64.5
CDE05G2371 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 2.8e-72 276.2 205 64.9
FvH4_4g11840 Fragaria vesca HOM05D006222 ORTHO05D007677 8.2e-72 274.6 204 66.7
PGR083G0744 Punica granatum HOM05D006222 ORTHO05D007677 8.2e-72 274.6 207 64.3
AT2G43110 Arabidopsis thaliana HOM05D006222 ORTHO05D007677 1.1e-71 274.2 204 65.7
ECA232G0640 Erigeron canadensis HOM05D006222 ORTHO05D007677 1.1e-71 274.2 199 66.8
PSO170G0570 Papaver somniferum HOM05D006222 ORTHO05D007677 1.8e-71 273.5 208 66.3
AL4G41770 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 3.1e-71 272.7 204 66.2
FAN12G2296 Fragaria x ananassa HOM05D006222 ORTHO05D007677 5.3e-71 271.9 204 66.7
MELO3C017672.2 Cucumis melo HOM05D006222 ORTHO05D007677 7.0e-71 271.6 240 57.9
AL401U10010 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 1.2e-70 270.8 204 65.7
BcaNung03540 Brassica carinata HOM05D006222 ORTHO05D007677 1.2e-70 270.8 200 67.0
Duzib212G0460 Durio zibethinus HOM05D006222 ORTHO05D007677 1.6e-70 270.4 219 61.2
FAN17G0755 Fragaria x ananassa HOM05D006222 ORTHO05D007677 3.5e-70 269.2 191 69.1
Ah.12g062130 Amaranthus hybridus HOM05D006222 ORTHO05D007677 4.5e-70 268.9 203 65.5
vmacro22720 Vaccinium macrocarpon HOM05D006222 ORTHO05D007677 1.0e-69 267.7 252 67.1
FAN12G2611 Fragaria x ananassa HOM05D006222 ORTHO05D007677 6.5e-69 265.0 218 62.4
Nn3g20171 Nelumbo nucifera HOM05D006222 ORTHO05D007677 1.5e-68 263.8 277 57.8
Ca_11418_v3 Cicer arietinum L. HOM05D006222 ORTHO05D007677 9.4e-68 261.2 204 63.2
Medtr1g116820 Medicago truncatula HOM05D006222 ORTHO05D007677 9.4e-68 261.2 209 62.2
arahy.Tifrunner.gnm1.ann1.VRQF1E Arachis hypogaea HOM05D006222 ORTHO05D007677 2.1e-67 260.0 211 61.1
arahy.Tifrunner.gnm1.ann1.S0FJR3 Arachis hypogaea HOM05D006222 ORTHO05D007677 1.4e-66 257.3 213 60.1
Psat0s4086g0080 Pisum sativum HOM05D006222 ORTHO05D007677 2.0e-65 253.4 204 59.8
Potri.014G150100 Populus trichocarpa HOM05D006222 ORTHO05D007677 3.7e-64 249.2 175 70.3
PGSC0003DMG400023306 Solanum tuberosum HOM05D006222 ORTHO05D007677 6.3e-64 248.4 178 70.8
ATR1089G038 Amborella trichopoda HOM05D006222 ORTHO05D007677 8.3e-64 248.1 198 61.6
CAN.G1310.8 Capsicum annuum HOM05D006222 ORTHO05D007677 1.4e-63 247.3 184 66.8
Lsat_1_v5_gn_2_38021 Lactuca sativa HOM05D006222 ORTHO05D007677 1.8e-63 246.9 174 70.7
Glyma.20G248400 Glycine max HOM05D006222 ORTHO05D007677 3.1e-63 246.1 201 61.2
Lj5g0022978 Lotus japonicus HOM05D006222 ORTHO05D007677 4.1e-63 245.7 202 61.4
Peaxi162Scf00423g00727 Petunia axillaris HOM05D006222 ORTHO05D007677 4.1e-63 245.7 176 69.3
TPR.G8895 Trifolium pratense HOM05D006222 ORTHO05D007677 4.1e-63 245.7 212 59.0
VMungo0720G0284 Vigna mungo HOM05D006222 ORTHO05D007677 4.2e-60 235.7 189 60.8
Solyc05g053880.4 Solanum lycopersicum HOM05D006222 ORTHO05D007677 1.2e-59 234.2 175 70.9
Os04g0348100 Oryza sativa ssp. japonica HOM05D006222 ORTHO05D007677 1.6e-59 233.8 201 56.2
Phvul.007G002100 Phaseolus vulgaris HOM05D006222 ORTHO05D007677 8.0e-59 231.5 188 59.6
FvH4_6g25320 Fragaria vesca HOM05D006222 ORTHO05D007677 8.8e-58 228.0 204 58.8
unitig_578.g15951 Utricularia gibba HOM05D006222 ORTHO05D007677 3.4e-57 226.1 227 54.6
Ah.12g060860 Amaranthus hybridus HOM05D006222 ORTHO05D007677 3.7e-56 222.6 203 58.1
Actinidia35881 Actinidia chinensis HOM05D006222 ORTHO05D007677 2.5e-52 209.9 164 63.4
RhsimUnG0147000 Rhododendron simsii HOM05D006222 ORTHO05D007677 7.2e-52 208.4 299 49.8
AUR62029129 Chenopodium quinoa HOM05D006222 ORTHO05D007677 4.7e-51 205.7 211 53.1
Rhsim04G0094000 Rhododendron simsii HOM05D006222 ORTHO05D007677 1.4e-50 204.1 326 45.7
Zm00001eb086320 Zea mays HOM05D006222 ORTHO05D007677 4.9e-48 195.7 172 56.4
SMO331G0016 Selaginella moellendorffii HOM05D006222 ORTHO05D007677 3.5e-46 189.5 197 46.7
Nitab4.5_0000161g0130 Nicotiana tabacum HOM05D006222 ORTHO05D007677 1.6e-43 180.6 217 47.0
CSS0048231 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 2.1e-43 180.3 103 86.4
QL10p043789 Quercus lobata HOM05D006222 ORTHO05D007677 4.7e-43 179.1 124 67.7
QL10p047309 Quercus lobata HOM05D006222 ORTHO05D007677 8.9e-42 174.9 184 56.5
FAN05G2938 Fragaria x ananassa HOM05D006222 ORTHO05D007677 4.9e-40 169.1 136 63.2
Mapoly0037s0098 Marchantia polymorpha HOM05D006222 ORTHO05D007677 3.2e-39 166.4 203 41.9
Pp3c6_17250 Physcomitrium patens HOM05D006222 ORTHO05D007677 1.0e-37 161.4 197 41.6
AUR62014992 Chenopodium quinoa HOM05D006222 ORTHO05D007677 1.5e-36 157.5 165 47.9
CBR_g19109 Chara braunii HOM05D006222 ORTHO05D007677 5.2e-34 149.1 193 42.0
Nitab4.5_0007578g0020 Nicotiana tabacum HOM05D006222 ORTHO05D007677 6.8e-34 148.7 285 42.1
QL10p043792 Quercus lobata HOM05D006222 ORTHO05D007677 6.8e-34 148.7 88 79.5
QL10p047312 Quercus lobata HOM05D006222 ORTHO05D007677 1.5e-33 147.5 88 79.5
Haze_11067 Corylus avellana HOM05D006222 ORTHO05D007677 1.3e-32 144.4 88 77.3
Eucgr.L00544 Eucalyptus grandis HOM05D006222 ORTHO05D007677 1.7e-32 144.1 123 56.9
Haze_11066 Corylus avellana HOM05D006222 ORTHO05D007677 1.1e-31 141.4 161 50.9
Actinidia27187 Actinidia chinensis HOM05D006222 ORTHO05D007677 2.4e-31 140.2 207 53.1
MD13G1276400 Malus domestica HOM05D006222 ORTHO05D007677 3.1e-26 123.2 117 53.8
HPP92_024563 Vanilla planifolia HOM05D006222 ORTHO05D007677 2.0e-25 120.6 82 67.1
Duzib268G0844 Durio zibethinus HOM05D006222 ORTHO05D007677 5.6e-20 102.4 172 53.5
Ah.12g060290 Amaranthus hybridus HOM05D006222 ORTHO05D007677 1.8e-18 97.4 62 75.8
AagrBONN_evm.TU.Sc2ySwM_362.227 Anthoceros agrestis HOM05D006222 ORTHO05D007677 9.0e-10 68.6 153 31.4
A03p23980 Brassica napus HOM05D006222 ORTHO05D007677 1.3e-08 64.7 48 58.3
SEGI_30148 Sequoiadendron giganteum HOM05D006222 ORTHO05D007677 1.4e-07 61.2 51 54.9
BcaC01g05263 Brassica carinata HOM05D006222 ORTHO05D007677 2.1e-06 57.4 43 67.4


User provided reference genes

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