Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 1.6e-121 439.5 225 100.0
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 1.2e-84 317.0 222 75.2
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 2.6e-84 315.8 225 76.0
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 4.4e-76 288.5 217 71.0
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 1.3e-75 287.0 301 56.5
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 1.0e-72 277.3 226 67.7
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 2.3e-72 276.2 222 66.7
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 3.3e-71 272.3 169 81.1
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 5.6e-71 271.6 221 66.5
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 7.3e-71 271.2 226 65.9
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 2.1e-70 269.6 223 67.3
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 2.8e-70 269.2 165 81.2
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 6.2e-70 268.1 165 81.2
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 6.2e-70 268.1 165 81.2
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 2.4e-69 266.2 223 65.0
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 3.1e-69 265.8 179 76.0
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 1.2e-68 263.8 162 80.2
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 2.2e-67 259.6 236 62.7
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 2.9e-67 259.2 173 76.3
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 3.8e-67 258.8 225 65.8
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 6.4e-67 258.1 239 61.5
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 6.4e-67 258.1 165 76.4
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 8.4e-67 257.7 222 65.8
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 1.4e-66 256.9 204 67.6
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 5.4e-66 255.0 153 80.4
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 5.4e-66 255.0 161 78.3
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 9.3e-66 254.2 221 62.0
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 1.2e-65 253.8 217 65.0
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 1.2e-65 253.8 192 68.8
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 1.6e-65 253.4 165 76.4
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 1.6e-65 253.4 164 78.0
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 2.1e-65 253.1 167 76.6
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 2.1e-65 253.1 217 64.5
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 6.0e-65 251.5 213 63.8
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 1.3e-64 250.4 161 74.5
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 1.3e-64 250.4 161 74.5
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 1.7e-64 250.0 156 76.9
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 2.3e-64 249.6 209 65.6
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 2.3e-64 249.6 159 76.1
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 3.0e-64 249.2 164 75.6
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 3.9e-64 248.8 162 75.9
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 5.1e-64 248.4 177 70.1
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 6.6e-64 248.1 223 61.9
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 8.7e-64 247.7 225 62.7
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 1.1e-63 247.3 161 73.9
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 1.5e-63 246.9 225 60.4
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 1.9e-63 246.5 190 67.4
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 2.5e-63 246.1 220 64.1
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 2.5e-63 246.1 228 61.0
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 2.5e-63 246.1 150 80.7
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 3.3e-63 245.7 164 75.0
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 9.6e-63 244.2 141 81.6
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 1.6e-62 243.4 194 66.5
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 2.1e-62 243.0 161 72.7
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 2.1e-62 243.0 161 72.7
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 2.1e-62 243.0 170 69.4
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 3.6e-62 242.3 141 81.6
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 4.8e-62 241.9 131 87.8
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 8.1e-62 241.1 157 75.2
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 1.1e-61 240.7 221 60.2
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 2.4e-61 239.6 214 63.1
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 2.4e-61 239.6 230 58.3
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 2.4e-61 239.6 184 66.3
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 3.1e-61 239.2 224 58.9
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 4.0e-61 238.8 179 69.3
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 5.3e-61 238.4 176 68.8
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 5.3e-61 238.4 227 57.3
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 1.2e-60 237.3 184 66.8
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 1.5e-60 236.9 225 60.9
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 2.0e-60 236.5 152 73.7
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 2.0e-60 236.5 155 75.5
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 2.6e-60 236.1 256 56.6
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 2.6e-60 236.1 231 59.3
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 2.6e-60 236.1 183 65.6
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 3.4e-60 235.7 196 63.3
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 3.4e-60 235.7 182 65.4
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 5.8e-60 235.0 160 71.2
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 5.8e-60 235.0 160 70.6
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 7.6e-60 234.6 133 83.5
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 9.9e-60 234.2 155 74.8
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 1.3e-59 233.8 228 58.8
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 1.7e-59 233.4 225 60.0
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 1.7e-59 233.4 160 71.2
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 1.7e-59 233.4 160 71.2
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 1.7e-59 233.4 160 71.2
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 1.7e-59 233.4 157 72.6
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 3.8e-59 232.3 161 69.6
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 4.9e-59 231.9 209 61.2
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 4.9e-59 231.9 173 67.6
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 6.4e-59 231.5 225 60.0
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 8.4e-59 231.1 228 57.5
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 1.1e-58 230.7 154 72.7
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 1.1e-58 230.7 161 69.6
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 1.4e-58 230.3 214 61.2
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 2.4e-58 229.6 160 69.4
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 2.4e-58 229.6 160 70.0
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 3.2e-58 229.2 222 60.4
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 4.2e-58 228.8 205 60.0
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 4.2e-58 228.8 131 81.7
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 5.4e-58 228.4 228 57.9
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 9.3e-58 227.6 231 58.0
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 1.2e-57 227.3 159 70.4
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 1.2e-57 227.3 160 70.0
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 1.2e-57 227.3 217 59.4
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 1.6e-57 226.9 157 70.7
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 3.5e-57 225.7 131 79.4
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 3.5e-57 225.7 131 79.4
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 6.0e-57 224.9 225 56.4
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 1.7e-56 223.4 165 70.3
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 9.6e-55 217.6 123 83.7
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 2.4e-53 213.0 203 58.1
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 9.9e-52 207.6 131 76.3
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 2.7e-49 199.5 161 60.9
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 1.1e-47 194.1 130 67.7
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 2.5e-47 193.0 229 48.5
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 7.4e-47 191.4 140 69.3
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 1.6e-46 190.3 129 66.7
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 7.6e-44 181.4 142 60.6
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 7.6e-44 181.4 142 60.6
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.4e-42 177.2 205 46.3
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 1.8e-37 160.2 170 58.8
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 2.5e-34 149.8 124 63.7
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 7.2e-34 148.3 126 69.0
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 3.0e-32 142.9 80 85.0
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 2.5e-31 139.8 78 85.9
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 4.3e-31 139.0 118 62.7
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 2.3e-24 116.7 211 36.5
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 2.8e-22 109.8 120 47.5
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 2.4e-21 106.7 140 41.4
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 1.2e-20 104.4 81 67.9
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 8.5e-19 98.2 59 74.6
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 1.9e-18 97.1 56 78.6
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 1.4e-16 90.9 49 85.7
SGA_v2.0_scaffold120G33007 Striga asiatica HOM05D002254 ORTHO05D007410 6.7e-16 88.6 56 73.2
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 3.1e-13 79.7 105 41.9
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 7.7e-12 75.1 54 66.7
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 4.2e-10 69.3 45 66.7
BcaB01g04538 Brassica carinata HOM05D005836 ORTHO05D007335 4.7e-09 65.9 33 87.9
Cpa.g.sc2.250 Carica papaya HOM05D005836 ORTHO05D007335 5.2e-08 62.4 75 52.0
HPP92_024987 Vanilla planifolia HOM05D005836 ORTHO05D007335 1.1e-07 61.2 74 47.3


User provided reference genes

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