Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005978 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 5.3e-276 953.7 485 100.0
CSS0034583 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 2.0e-275 951.8 485 99.8
Actinidia09006 Actinidia chinensis HOM05D006741 ORTHO05D008434 5.6e-185 651.4 488 71.3
Rhsim08G0227700 Rhododendron simsii HOM05D006741 ORTHO05D008434 1.3e-181 640.2 494 71.1
Actinidia39136 Actinidia chinensis HOM05D006741 ORTHO05D008434 4.3e-177 625.2 487 69.2
Dinv30435 Davidia involucrata HOM05D006741 ORTHO05D008434 1.1e-167 594.0 462 68.6
TAR636G1866 Trochodendron aralioides HOM05D006741 ORTHO05D008434 1.9e-161 573.2 505 62.8
vmacro17014 Vaccinium macrocarpon HOM05D006741 ORTHO05D008434 5.9e-142 508.4 452 62.8
Cfa003646 Carpinus fangiana HOM05D006741 ORTHO05D008434 1.9e-140 503.4 502 58.2
CiPaw.01G231300 Carya illinoinensis HOM05D006741 ORTHO05D008434 1.6e-139 500.4 502 58.0
Thecc.06G100200 Theobroma cacao HOM05D006741 ORTHO05D008434 5.1e-138 495.4 507 56.6
QL05p019947 Quercus lobata HOM05D006741 ORTHO05D008434 5.7e-137 491.9 510 56.1
Duzib235G1269 Durio zibethinus HOM05D006741 ORTHO05D008434 4.2e-132 475.7 506 56.1
Nn6g35322 Nelumbo nucifera HOM05D006741 ORTHO05D008434 1.1e-129 467.6 506 52.6
Duzib192G0766 Durio zibethinus HOM05D006741 ORTHO05D008434 1.7e-128 463.8 504 54.2
Manes.11G033400 Manihot esculenta HOM05D006741 ORTHO05D008434 1.7e-128 463.8 522 53.1
COL.COLO4_30514 Corchorus olitorius HOM05D006741 ORTHO05D008434 3.7e-128 462.6 511 53.6
Haze_15849 Corylus avellana HOM05D006741 ORTHO05D008434 1.1e-127 461.1 431 59.6
Atru.chr1.3525 Acer truncatum HOM05D006741 ORTHO05D008434 5.3e-127 458.8 498 55.2
Oeu017120.1 Olea europaea HOM05D006741 ORTHO05D008434 1.2e-126 457.6 491 52.5
TWI75G1374 Tripterygium wilfordii HOM05D006741 ORTHO05D008434 6.7e-122 441.8 513 51.7
Cpa.g.sc25.10 Carica papaya HOM05D006741 ORTHO05D008434 1.0e-117 427.9 491 51.1
Potri.013G040800 Populus trichocarpa HOM05D006741 ORTHO05D008434 1.7e-117 427.2 505 53.1
Gohir.A06G189500 Gossypium hirsutum HOM05D006741 ORTHO05D008434 5.4e-111 405.6 498 51.4
DCAR_023081 Daucus carota HOM05D006741 ORTHO05D008434 3.5e-110 402.9 496 49.2
Sabra05G0046800 Salix brachista HOM05D006741 ORTHO05D008434 3.5e-110 402.9 506 50.0
PSO210G6928 Papaver somniferum HOM05D006741 ORTHO05D008434 2.3e-109 400.2 516 49.6
GSVIVG01016979001 Vitis vinifera HOM05D006741 ORTHO05D008434 2.3e-109 400.2 489 49.5
Cc04_g02540 Coffea canephora HOM05D006741 ORTHO05D008434 5.0e-109 399.1 491 49.9
Gorai.010G230700 Gossypium raimondii HOM05D006741 ORTHO05D008434 6.5e-109 398.7 498 51.0
Lj9A513G60 Lonicera japonica HOM05D006741 ORTHO05D008434 1.1e-108 397.9 443 56.7
Gohir.D06G197900 Gossypium hirsutum HOM05D006741 ORTHO05D008434 4.2e-108 396.0 498 50.8
PSO210G4778 Papaver somniferum HOM05D006741 ORTHO05D008434 1.6e-107 394.0 514 49.4
Sabra13G0037700 Salix brachista HOM05D006741 ORTHO05D008434 1.6e-107 394.0 477 50.5
Potri.005G053300 Populus trichocarpa HOM05D006741 ORTHO05D008434 2.8e-107 393.3 498 50.2
Lalb_Chr01g0013161 Lupinus albus HOM05D006741 ORTHO05D008434 1.2e-105 387.9 501 49.1
Aqoxy7G03978 Aquilegia oxysepala HOM05D006741 ORTHO05D008434 2.6e-105 386.7 512 47.9
CANSAT56G2677 Cannabis sativa HOM05D006741 ORTHO05D008434 9.8e-105 384.8 518 45.9
Eucgr.J02937 Eucalyptus grandis HOM05D006741 ORTHO05D008434 2.8e-104 383.3 422 51.7
Sed0020930 Sechium edule HOM05D006741 ORTHO05D008434 8.3e-104 381.7 507 48.7
Prupe.3G058900 Prunus persica HOM05D006741 ORTHO05D008434 1.8e-103 380.6 520 50.0
Sc12g0010170 Simmondsia chinensis HOM05D006741 ORTHO05D008434 5.4e-103 379.0 508 47.4
MSTRG.11026 Avicennia marina HOM05D006741 ORTHO05D008434 1.2e-102 377.9 483 47.2
arahy.Tifrunner.gnm1.ann1.X4D5DL Arachis hypogaea HOM05D006741 ORTHO05D008434 2.0e-102 377.1 448 49.3
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 4.5e-102 375.9 475 50.1
MD17G1183900 Malus domestica HOM05D006741 ORTHO05D008434 4.5e-102 375.9 514 49.4
PGR102G3207 Punica granatum HOM05D006741 ORTHO05D008434 5.9e-102 375.6 521 47.2
Lj3g0008384 Lotus japonicus HOM05D006741 ORTHO05D008434 7.8e-102 375.2 479 49.7
ClCG07G013320 Citrullus lanatus HOM05D006741 ORTHO05D008434 3.3e-100 369.8 549 45.4
Nitab4.5_0001172g0120 Nicotiana tabacum HOM05D006741 ORTHO05D008434 3.3e-100 369.8 531 47.6
arahy.Tifrunner.gnm1.ann1.CS2PXA Arachis hypogaea HOM05D006741 ORTHO05D008434 2.8e-99 366.7 444 49.3
MD09G1202700 Malus domestica HOM05D006741 ORTHO05D008434 2.8e-99 366.7 516 48.1
Solyc12g044620.2 Solanum lycopersicum HOM05D006741 ORTHO05D008434 4.7e-99 365.9 541 45.7
MELO3C013001.2 Cucumis melo HOM05D006741 ORTHO05D008434 5.2e-98 362.5 536 45.5
PGSC0003DMG400026441 Solanum tuberosum HOM05D006741 ORTHO05D008434 1.2e-97 361.3 515 46.4
Hund28870 Selenicereus undatus HOM05D006741 ORTHO05D008434 1.7e-96 357.5 508 46.5
MBI01_g10133_MAGBIO Magnolia biondii HOM05D006741 ORTHO05D008434 6.4e-96 355.5 507 45.6
CsaV3_3G023590 Cucumis sativus L. HOM05D006741 ORTHO05D008434 1.1e-95 354.8 482 47.3
Sopen12g023080 Solanum pennellii HOM05D006741 ORTHO05D008434 4.1e-95 352.8 541 44.9
Hund28829 Selenicereus undatus HOM05D006741 ORTHO05D008434 7.8e-94 348.6 499 45.9
Ciclev10027417m.g Citrus clementina HOM05D006741 ORTHO05D008434 4.7e-91 339.3 501 44.5
SGA_v2.0_scaffold69G23318 Striga asiatica HOM05D006741 ORTHO05D008434 6.2e-91 339.0 494 47.0
HanXRQChr09g0276261 Helianthus annuus HOM05D006741 ORTHO05D008434 2.0e-89 334.0 479 46.1
Nitab4.5_0004241g0050 Nicotiana tabacum HOM05D006741 ORTHO05D008434 2.0e-89 334.0 516 45.3
Hma1.2p1_0430F.1_g151390 Hydrangea macrophylla HOM05D006741 ORTHO05D008434 8.3e-88 328.6 490 46.3
Ca_23263_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 1.4e-87 327.8 472 47.5
Ca_23272_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 1.4e-87 327.8 472 47.5
Medtr8g014490 Medicago truncatula HOM05D006741 ORTHO05D008434 5.4e-87 325.9 455 45.9
ECA232G4726 Erigeron canadensis HOM05D006741 ORTHO05D008434 1.2e-86 324.7 479 45.7
TPR.G26946 Trifolium pratense HOM05D006741 ORTHO05D008434 8.6e-85 318.5 514 43.4
Lsat_1_v5_gn_4_97420 Lactuca sativa HOM05D006741 ORTHO05D008434 4.3e-84 316.2 502 43.4
Psat4g197400 Pisum sativum HOM05D006741 ORTHO05D008434 1.2e-81 308.1 445 44.3
Peaxi162Scf00177g00125 Petunia axillaris HOM05D006741 ORTHO05D008434 7.5e-81 305.4 450 44.9
Glyma.08G200900 Glycine max HOM05D006741 ORTHO05D008434 2.2e-80 303.9 436 45.6
Ah.01g005790 Amaranthus hybridus HOM05D006741 ORTHO05D008434 4.6e-78 296.2 503 41.9
AUR62031924 Chenopodium quinoa HOM05D006741 ORTHO05D008434 6.0e-78 295.8 502 41.0
RcHm_v2.0_Chr2g0140551 Rosa chinensis HOM05D006741 ORTHO05D008434 1.3e-77 294.7 502 44.2
THA.LOC104806335 Tarenaya hassleriana HOM05D006741 ORTHO05D008434 2.3e-77 293.9 485 39.4
ClCG00G003340 Citrullus lanatus HOM05D006741 ORTHO05D008434 4.3e-76 289.7 439 43.1
Nn8g39070 Nelumbo nucifera HOM05D006741 ORTHO05D008434 2.4e-74 283.9 374 45.2
Glyma.07G015400 Glycine max HOM05D006741 ORTHO05D008434 3.4e-73 280.0 429 44.3
VMungo0331G0583 Vigna mungo HOM05D006741 ORTHO05D008434 3.4e-73 280.0 452 42.9
EL10Ac3g05317 Beta vulgaris HOM05D006741 ORTHO05D008434 1.7e-72 277.7 500 39.8
Dinv37976 Davidia involucrata HOM05D006741 ORTHO05D008434 3.8e-72 276.6 246 61.4
Phvul.010G145200 Phaseolus vulgaris HOM05D006741 ORTHO05D008434 6.4e-72 275.8 460 41.7
FAN14G5382 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.4e-71 274.6 500 42.6
FvH4_6g32410 Fragaria vesca HOM05D006741 ORTHO05D008434 1.9e-71 274.2 500 42.6
Aa31LG9G10130 Aethionema arabicum HOM05D006741 ORTHO05D008434 1.7e-69 267.7 444 41.0
FAN05G1069 Fragaria x ananassa HOM05D006741 ORTHO05D008434 2.3e-69 267.3 488 42.8
AL6G47480 Arabidopsis lyrata HOM05D006741 ORTHO05D008434 5.1e-69 266.2 445 41.1
Carub.0006s3171 Capsella rubella HOM05D006741 ORTHO05D008434 3.3e-68 263.5 469 37.7
FAN02G4526 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.2e-67 261.5 505 40.6
AT4G12540 Arabidopsis thaliana HOM05D006741 ORTHO05D008434 3.6e-67 260.0 459 39.7
Thhalv10028639m.g Eutrema salsugineum HOM05D006741 ORTHO05D008434 1.2e-65 255.0 445 40.4
CARHR253650 Cardamine hirsuta HOM05D006741 ORTHO05D008434 3.9e-61 240.0 447 38.0
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 9.6e-60 235.3 480 41.5
Sp6g04980 Schrenkiella parvula HOM05D006741 ORTHO05D008434 3.6e-59 233.4 464 36.9
SpUn0055_0020 Schrenkiella parvula HOM05D006741 ORTHO05D008434 1.4e-58 231.5 462 36.6
A09p26830 Brassica napus HOM05D006741 ORTHO05D008434 9.0e-58 228.8 457 38.9
BcaC04g21238 Brassica carinata HOM05D006741 ORTHO05D008434 2.6e-57 227.3 440 40.2
C09p34000 Brassica napus HOM05D006741 ORTHO05D008434 2.6e-57 227.3 440 40.2
BolC9t56238H Brassica oleracea HOM05D006741 ORTHO05D008434 2.6e-57 227.3 440 40.2
BraA09t38254Z Brassica rapa HOM05D006741 ORTHO05D008434 9.9e-57 225.3 470 38.9
CDE02G1085 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 3.2e-55 220.3 483 36.6
TAR624G0518 Trochodendron aralioides HOM05D006741 ORTHO05D008434 2.2e-48 197.6 224 49.1
Actinidia32099 Actinidia chinensis HOM05D006741 ORTHO05D008434 3.8e-48 196.8 482 35.9
ATR0705G093 Amborella trichopoda HOM05D006741 ORTHO05D008434 1.6e-46 191.4 409 36.2
Os05g0532500 Oryza sativa ssp. japonica HOM05D006741 ORTHO05D008434 8.4e-40 169.1 481 31.4
Cpa.g.sc25.28 Carica papaya HOM05D006741 ORTHO05D008434 1.1e-39 168.7 271 40.6
Zm00001eb353790 Zea mays HOM05D006741 ORTHO05D008434 7.4e-28 129.4 503 28.2
CDE04G0136 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 1.7e-24 118.2 222 38.7
unitig_748.g7441 Utricularia gibba HOM05D006741 ORTHO05D008434 6.5e-24 116.3 261 36.4
unitig_748.g7440 Utricularia gibba HOM05D006741 ORTHO05D008434 7.9e-22 109.4 142 43.7
BcaC01g04588 Brassica carinata HOM05D006741 ORTHO05D008434 2.8e-19 100.9 286 33.2
ECA234G0697 Erigeron canadensis HOM05D006741 ORTHO05D008434 5.3e-10 70.1 207 33.3
Dinv11548 Davidia involucrata HOM05D065926 ORTHO05D008434 2.0e-09 68.2 61 59.0
C03p36010 Brassica napus HOM05D006741 ORTHO05D008434 1.3e-08 65.5 54 61.1
BolC3t15911H Brassica oleracea HOM05D006741 ORTHO05D008434 1.3e-08 65.5 54 61.1
CDE04G1568 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 1.7e-08 65.1 94 39.4


User provided reference genes

Program Settings