Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005959 Camellia sinensis var. sinensis HOM05D000846 ORTHO05D024716 6.4e-35 150.2 76 100.0
CSS0024282 Camellia sinensis var. sinensis HOM05D000846 ORTHO05D024716 8.3e-35 149.8 76 98.7
Actinidia39034 Actinidia chinensis HOM05D000846 ORTHO05D006755 3.2e-10 68.2 59 64.4
Actinidia30531 Actinidia chinensis HOM05D006894 ORTHO05D008724 3.9e-08 61.2 59 61.0
CSS0000492 Camellia sinensis var. sinensis HOM05D000846 ORTHO05D006755 1.1e-07 59.7 58 58.6
DCAR_001823 Daucus carota HOM05D000846 ORTHO05D006755 1.1e-07 59.7 58 53.4
MSTRG.16514 Avicennia marina HOM05D000846 ORTHO05D006755 1.9e-07 58.9 60 55.0
Dinv19375 Davidia involucrata HOM05D000846 ORTHO05D006755 1.9e-07 58.9 61 55.7
QL02p099167 Quercus lobata HOM05D000846 ORTHO05D006755 1.9e-07 58.9 57 52.6
BcaC06g32677 Brassica carinata HOM05D000846 ORTHO05D006755 3.3e-07 58.2 57 54.4
C07p55610 Brassica napus HOM05D000846 ORTHO05D006755 3.3e-07 58.2 57 54.4
BolC7t46041H Brassica oleracea HOM05D000846 ORTHO05D006755 3.3e-07 58.2 57 54.4
Atru.chr11.1221 Acer truncatum HOM05D000846 ORTHO05D006755 4.3e-07 57.8 57 52.6
Ah.03g132090 Amaranthus hybridus HOM05D000846 ORTHO05D006755 4.3e-07 57.8 57 56.1
HanXRQChr03g0073611 Helianthus annuus HOM05D000846 ORTHO05D006755 4.3e-07 57.8 57 52.6
C01p23880 Brassica napus HOM05D000846 ORTHO05D006755 5.6e-07 57.4 57 52.6
Cfa005511 Carpinus fangiana HOM05D000846 ORTHO05D006755 5.6e-07 57.4 60 53.3
AUR62026527 Chenopodium quinoa HOM05D000846 ORTHO05D006755 5.6e-07 57.4 58 56.9
Cc02_g22620 Coffea canephora HOM05D000846 ORTHO05D006755 5.6e-07 57.4 60 51.7
BcaC09g50565 Brassica carinata HOM05D000846 ORTHO05D006755 7.3e-07 57.0 57 52.6
A01p18930 Brassica napus HOM05D000846 ORTHO05D006755 7.3e-07 57.0 57 52.6
BolC1t02333H Brassica oleracea HOM05D000846 ORTHO05D006755 7.3e-07 57.0 57 52.6
BraA01t01834Z Brassica rapa HOM05D000846 ORTHO05D006755 7.3e-07 57.0 57 52.6
SGA_v2.0_scaffold110G31332 Striga asiatica HOM05D000846 ORTHO05D006755 7.3e-07 57.0 61 52.5
TAR381G0552 Trochodendron aralioides HOM05D000846 ORTHO05D006755 7.3e-07 57.0 57 56.1
AT4G27640 Arabidopsis thaliana HOM05D000846 ORTHO05D006755 9.6e-07 56.6 57 50.9
BcaNung01650 Brassica carinata HOM05D000846 ORTHO05D006755 9.6e-07 56.6 57 52.6
Carub.0007s1321 Capsella rubella HOM05D000846 ORTHO05D006755 9.6e-07 56.6 57 50.9
Rhsim05G0119700 Rhododendron simsii HOM05D000846 ORTHO05D006755 9.6e-07 56.6 57 56.1
EL10Ac9g22362 Beta vulgaris HOM05D000846 ORTHO05D006755 1.2e-06 56.2 79 46.8
A03p57390 Brassica napus HOM05D000846 ORTHO05D006755 1.2e-06 56.2 57 52.6
BraA03t14805Z Brassica rapa HOM05D000846 ORTHO05D006755 1.2e-06 56.2 57 52.6
Nn5g28327 Nelumbo nucifera HOM05D000846 ORTHO05D006755 1.2e-06 56.2 57 56.1
AL7G25080 Arabidopsis lyrata HOM05D000846 ORTHO05D006755 1.6e-06 55.8 57 52.6
Sp7g25600 Schrenkiella parvula HOM05D000846 ORTHO05D006755 1.6e-06 55.8 57 52.6
Aa31LG9G17870 Aethionema arabicum HOM05D000846 ORTHO05D006755 2.1e-06 55.5 57 54.4
Duzib251G0663 Durio zibethinus HOM05D000846 ORTHO05D006755 2.1e-06 55.5 57 52.6
Thhalv10024293m.g Eutrema salsugineum HOM05D000846 ORTHO05D006755 2.1e-06 55.5 57 52.6
Lsat_1_v5_gn_9_118641 Lactuca sativa HOM05D000846 ORTHO05D006755 2.1e-06 55.5 57 54.4
MD08G1234100 Malus domestica HOM05D000846 ORTHO05D006755 2.1e-06 55.5 57 52.6
MD15G1425400 Malus domestica HOM05D000846 ORTHO05D006755 2.1e-06 55.5 57 52.6
EL10Ac6g13093 Beta vulgaris HOM05D000846 ORTHO05D006755 2.8e-06 55.1 57 54.4
ECA240G4115 Erigeron canadensis HOM05D000846 ORTHO05D006755 2.8e-06 55.1 57 50.9
Gohir.A05G308500 Gossypium hirsutum HOM05D000846 ORTHO05D006755 2.8e-06 55.1 58 55.2
Gohir.D05G309200 Gossypium hirsutum HOM05D000846 ORTHO05D006755 2.8e-06 55.1 58 55.2
Gorai.009G329500 Gossypium raimondii HOM05D000846 ORTHO05D006755 2.8e-06 55.1 58 55.2
Oeu008902.1 Olea europaea HOM05D000846 ORTHO05D006755 2.8e-06 55.1 60 51.7
Thecc.02G295900 Theobroma cacao HOM05D000846 ORTHO05D006755 2.8e-06 55.1 57 52.6
Migut.B00826 Erythranthe guttata HOM05D000846 ORTHO05D006755 3.6e-06 54.7 60 50.0
Prupe.1G571100 Prunus persica HOM05D000846 ORTHO05D006755 3.6e-06 54.7 60 50.0
RcHm_v2.0_Chr7g0221821 Rosa chinensis HOM05D000846 ORTHO05D006755 3.6e-06 54.7 57 50.9
COL.COLO4_00108 Corchorus olitorius HOM05D000846 ORTHO05D024716 4.7e-06 54.3 33 75.8
MELO3C019464.2 Cucumis melo HOM05D000846 ORTHO05D006755 4.7e-06 54.3 57 52.6
FvH4_5g29150 Fragaria vesca HOM05D000846 ORTHO05D006755 4.7e-06 54.3 60 48.3
FAN08G3691 Fragaria x ananassa HOM05D000846 ORTHO05D006755 4.7e-06 54.3 60 48.3
Glyma.15G046000 Glycine max HOM05D000846 ORTHO05D006755 4.7e-06 54.3 56 51.8
Hund15507 Selenicereus undatus HOM05D000846 ORTHO05D006755 4.7e-06 54.3 59 49.2
GSVIVG01022879001 Vitis vinifera HOM05D000846 ORTHO05D006755 6.2e-06 53.9 60 53.3
Haze_01712 Corylus avellana HOM05D000846 ORTHO05D006755 8.1e-06 53.5 33 72.7
CsaV3_3G019110 Cucumis sativus L. HOM05D000846 ORTHO05D006755 8.1e-06 53.5 57 52.6
Eucgr.I02730 Eucalyptus grandis HOM05D000846 ORTHO05D006755 8.1e-06 53.5 57 52.6
Glyma.08G187000 Glycine max HOM05D000846 ORTHO05D006755 8.1e-06 53.5 57 49.1
Peaxi162Scf00011g00530 Petunia axillaris HOM05D000846 ORTHO05D006755 8.1e-06 53.5 34 67.6


User provided reference genes

Program Settings