Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 7.4e-53 210.3 109 100.0
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.8e-52 208.4 108 99.1
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.8e-52 208.4 108 99.1
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 4.8e-52 207.6 108 99.1
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.4e-51 205.3 108 98.1
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.8e-46 189.1 108 88.9
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 3.0e-46 188.3 108 86.1
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 5.2e-46 187.6 107 86.9
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 6.7e-46 187.2 108 88.0
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 4.4e-45 184.5 107 86.9
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 5.7e-45 184.1 108 87.0
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 2.8e-44 181.8 108 82.4
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 2.8e-44 181.8 108 82.4
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 6.3e-44 180.6 108 80.6
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 1.1e-43 179.9 108 82.4
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 1.4e-43 179.5 108 80.6
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 1.8e-43 179.1 108 82.4
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 2.4e-43 178.7 108 81.5
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 2.4e-43 178.7 108 81.5
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 4.1e-43 177.9 108 79.6
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 4.1e-43 177.9 108 81.5
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 5.3e-43 177.6 107 82.2
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 5.3e-43 177.6 108 78.7
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 9.1e-43 176.8 108 79.6
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 1.6e-42 176.0 108 79.6
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 4.5e-42 174.5 107 80.4
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 1.0e-41 173.3 106 82.1
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 1.0e-41 173.3 107 79.4
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 1.0e-41 173.3 108 77.8
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 2.9e-41 171.8 107 78.5
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 3.8e-41 171.4 108 78.7
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 3.8e-41 171.4 108 76.9
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 3.8e-41 171.4 108 77.8
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 8.5e-41 170.2 108 76.9
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 8.5e-41 170.2 107 76.6
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 8.5e-41 170.2 109 78.9
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 1.1e-40 169.9 107 78.5
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 1.1e-40 169.9 106 79.2
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 1.1e-40 169.9 108 75.9
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 1.5e-40 169.5 108 77.8
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 1.5e-40 169.5 108 77.8
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 1.5e-40 169.5 108 76.9
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 1.9e-40 169.1 108 75.0
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 1.9e-40 169.1 108 76.9
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 2.5e-40 168.7 108 73.1
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 2.5e-40 168.7 109 76.1
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 2.5e-40 168.7 107 75.7
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 2.5e-40 168.7 108 77.8
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 3.2e-40 168.3 108 75.0
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 4.2e-40 167.9 108 75.0
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 9.4e-40 166.8 108 75.9
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 9.4e-40 166.8 108 75.0
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 9.4e-40 166.8 108 74.1
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 9.4e-40 166.8 107 75.7
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 1.2e-39 166.4 110 74.5
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 1.6e-39 166.0 108 75.0
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 1.6e-39 166.0 110 74.5
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 1.6e-39 166.0 110 74.5
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 2.1e-39 165.6 108 78.7
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 2.7e-39 165.2 108 72.2
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 3.6e-39 164.9 106 77.4
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 3.6e-39 164.9 108 72.2
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 6.1e-39 164.1 108 73.1
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 6.1e-39 164.1 107 73.8
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 6.1e-39 164.1 107 73.8
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 6.1e-39 164.1 108 74.1
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 6.1e-39 164.1 107 74.8
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 6.1e-39 164.1 107 74.8
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 6.1e-39 164.1 110 74.5
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 6.1e-39 164.1 110 76.4
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 6.1e-39 164.1 108 74.1
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 6.1e-39 164.1 107 72.9
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 1.0e-38 163.3 107 72.9
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 1.0e-38 163.3 108 74.1
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 1.4e-38 162.9 107 72.0
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 1.4e-38 162.9 108 71.3
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 1.8e-38 162.5 108 74.1
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 2.3e-38 162.2 107 71.0
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 2.3e-38 162.2 107 72.0
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 4.0e-38 161.4 107 71.0
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 5.2e-38 161.0 107 72.9
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 6.7e-38 160.6 110 73.6
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 8.8e-38 160.2 107 72.9
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 8.8e-38 160.2 107 72.9
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 8.8e-38 160.2 107 72.9
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 2.0e-37 159.1 107 72.0
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 2.0e-37 159.1 107 72.0
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 2.0e-37 159.1 107 72.0
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 2.0e-37 159.1 108 71.3
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 2.0e-37 159.1 108 71.3
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 2.0e-37 159.1 108 71.3
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 3.3e-37 158.3 104 71.2
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 4.4e-37 157.9 107 71.0
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 7.5e-37 157.1 108 70.4
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 9.7e-37 156.8 110 74.5
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 3.7e-36 154.8 107 72.9
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 6.3e-36 154.1 113 75.2
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 8.2e-36 153.7 133 61.7
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 3.1e-35 151.8 108 68.5
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 4.1e-35 151.4 108 71.3
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 5.3e-35 151.0 108 68.5
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 5.3e-35 151.0 108 68.5
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 5.3e-35 151.0 108 68.5
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 7.0e-35 150.6 108 67.6
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 9.1e-35 150.2 108 67.6
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 9.1e-35 150.2 101 72.3
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.0e-34 149.1 108 66.7
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 3.5e-34 148.3 104 67.3
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 7.7e-34 147.1 104 68.3
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 6.5e-33 144.1 108 63.9
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 2.8e-28 128.6 82 75.6
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 4.1e-27 124.8 108 62.0
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 5.9e-26 120.9 108 63.0
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 2.9e-25 118.6 74 77.0
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 1.6e-23 112.8 100 52.0
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 3.6e-23 111.7 108 57.4
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 8.0e-23 110.5 96 57.3
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 3.0e-22 108.6 107 48.6
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 2.0e-21 105.9 105 54.3
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 3.5e-18 95.1 73 61.6
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 6.6e-17 90.9 108 49.1
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 1.5e-16 89.7 104 46.2
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 5.2e-14 81.3 100 45.0
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 7.0e-11 70.9 115 41.7
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 1.2e-07 60.1 35 77.1
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 1.2e-07 60.1 35 77.1
C09p29040 Brassica napus HOM05D005450 ORTHO05D006880 3.6e-07 58.5 41 65.9
Rhsim11G0181000 Rhododendron simsii HOM05D004650 ORTHO05D005715 5.2e-06 54.7 72 45.8


User provided reference genes

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