Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005940 Camellia sinensis var. sinensis HOM05D007112 ORTHO05D008930 1.6e-123 446.0 211 100.0
Actinidia23803 Actinidia chinensis HOM05D007112 ORTHO05D008930 3.6e-88 328.6 227 71.4
Rhsim01G0247600 Rhododendron simsii HOM05D007112 ORTHO05D008930 6.2e-80 301.2 225 67.1
Hma1.2p1_1043F.1_g251280 Hydrangea macrophylla HOM05D007112 ORTHO05D008930 8.1e-80 300.8 234 64.1
Dinv28792 Davidia involucrata HOM05D007112 ORTHO05D008930 2.9e-77 292.4 222 66.2
vmacro14688 Vaccinium macrocarpon HOM05D007112 ORTHO05D008930 4.6e-75 285.0 232 62.5
Atru.chr6.3529 Acer truncatum HOM05D007112 ORTHO05D008930 1.7e-74 283.1 225 62.2
GSVIVG01001529001 Vitis vinifera HOM05D007112 ORTHO05D008930 1.6e-72 276.6 227 59.5
Ciclev10016325m.g Citrus clementina HOM05D007112 ORTHO05D008930 4.0e-71 271.9 234 58.5
TAR362G0557 Trochodendron aralioides HOM05D007112 ORTHO05D008930 4.4e-70 268.5 229 56.8
Oeu013523.1 Olea europaea HOM05D007112 ORTHO05D008930 2.9e-69 265.8 229 58.1
LjContig00389g0002281 Lotus japonicus HOM05D007112 ORTHO05D008930 3.8e-69 265.4 222 57.7
Lj2A1111T23 Lonicera japonica HOM05D007112 ORTHO05D008930 4.9e-69 265.0 228 59.2
Cfa017735 Carpinus fangiana HOM05D007112 ORTHO05D008930 3.2e-68 262.3 225 59.1
RcHm_v2.0_Chr6g0282211 Rosa chinensis HOM05D007112 ORTHO05D008930 4.2e-68 261.9 218 61.0
Prupe.8G187100 Prunus persica HOM05D007112 ORTHO05D008930 1.6e-67 260.0 233 58.8
VMungo0331G1777 Vigna mungo HOM05D007112 ORTHO05D008930 3.5e-67 258.8 228 55.7
MD05G1153700 Malus domestica HOM05D007112 ORTHO05D008930 2.3e-66 256.1 224 59.4
Phvul.010G036300 Phaseolus vulgaris HOM05D007112 ORTHO05D008930 6.6e-66 254.6 228 54.8
arahy.Tifrunner.gnm1.ann1.T2R7SH Arachis hypogaea HOM05D007112 ORTHO05D008930 1.1e-65 253.8 224 57.6
MSTRG.18505 Avicennia marina HOM05D007112 ORTHO05D008930 1.5e-65 253.4 228 56.1
Duzib133G1446 Durio zibethinus HOM05D007112 ORTHO05D008930 1.5e-65 253.4 229 53.7
Glyma.07G124300 Glycine max HOM05D007112 ORTHO05D008930 1.5e-65 253.4 227 54.6
SalBow3G4154 Salvia bowleyana HOM05D007112 ORTHO05D008930 1.5e-65 253.4 223 54.3
FvH4_2g17490 Fragaria vesca HOM05D007112 ORTHO05D008930 9.6e-65 250.8 218 58.7
FAN15G3611 Fragaria x ananassa HOM05D007112 ORTHO05D008930 2.8e-64 249.2 218 58.7
TWI36G0064 Tripterygium wilfordii HOM05D007112 ORTHO05D008930 3.6e-64 248.8 228 54.4
Migut.D00774 Erythranthe guttata HOM05D007112 ORTHO05D008930 8.1e-64 247.7 223 55.6
ClCG09G008370 Citrullus lanatus HOM05D007112 ORTHO05D008930 3.1e-63 245.7 230 54.3
Cc01_g15870 Coffea canephora HOM05D007112 ORTHO05D008930 5.3e-63 245.0 240 52.5
Glyma.03G097000 Glycine max HOM05D007112 ORTHO05D008930 1.5e-62 243.4 226 54.4
Thecc.01G207600 Theobroma cacao HOM05D007112 ORTHO05D008930 4.5e-62 241.9 230 53.0
Nitab4.5_0000038g0350 Nicotiana tabacum HOM05D007112 ORTHO05D008930 5.8e-62 241.5 232 50.9
CsaV3_7G026720 Cucumis sativus L. HOM05D007112 ORTHO05D008930 7.6e-62 241.1 231 53.7
Sed0011312 Sechium edule HOM05D007112 ORTHO05D008930 9.9e-62 240.7 224 54.5
COL.COLO4_34270 Corchorus olitorius HOM05D007112 ORTHO05D008930 1.3e-61 240.4 229 52.8
Gorai.001G227200 Gossypium raimondii HOM05D007112 ORTHO05D008930 4.9e-61 238.4 227 52.4
arahy.Tifrunner.gnm1.ann1.X2Q8CL Arachis hypogaea HOM05D007112 ORTHO05D008930 8.4e-61 237.7 211 55.9
Gohir.A07G195600 Gossypium hirsutum HOM05D007112 ORTHO05D008930 8.4e-61 237.7 227 51.5
Sabra14G0134200 Salix brachista HOM05D007112 ORTHO05D008930 8.4e-61 237.7 222 55.4
Nitab4.5_0010469g0020 Nicotiana tabacum HOM05D007112 ORTHO05D008930 4.2e-60 235.3 232 50.0
HanXRQChr08g0231791 Helianthus annuus HOM05D007112 ORTHO05D008930 2.1e-59 233.0 231 54.5
AUR62008068 Chenopodium quinoa HOM05D007112 ORTHO05D008930 2.7e-59 232.6 222 51.8
Gohir.D07G202200 Gossypium hirsutum HOM05D007112 ORTHO05D008930 2.7e-59 232.6 227 51.5
Lalb_Chr07g0194661 Lupinus albus HOM05D007112 ORTHO05D008930 2.7e-59 232.6 229 53.7
Peaxi162Scf02239g00022 Petunia axillaris HOM05D007112 ORTHO05D008930 3.5e-59 232.3 240 48.3
Hund02806 Selenicereus undatus HOM05D007112 ORTHO05D008930 4.6e-59 231.9 232 50.9
FAN24G0137 Fragaria x ananassa HOM05D007112 ORTHO05D008930 6.0e-59 231.5 224 55.4
TPR.G17379 Trifolium pratense HOM05D007112 ORTHO05D008930 1.3e-58 230.3 224 52.7
Medtr8g010140 Medicago truncatula HOM05D007112 ORTHO05D008930 3.0e-58 229.2 225 52.4
Sc24g0003360 Simmondsia chinensis HOM05D007112 ORTHO05D008930 3.9e-58 228.8 205 55.1
AUR62028645 Chenopodium quinoa HOM05D007112 ORTHO05D008930 5.1e-58 228.4 222 51.4
ECA247G2139 Erigeron canadensis HOM05D000092 ORTHO05D008930 1.5e-57 226.9 214 56.5
PGSC0003DMG400021909 Solanum tuberosum HOM05D007112 ORTHO05D008930 1.5e-57 226.9 217 51.6
QL05p089159 Quercus lobata HOM05D007112 ORTHO05D008930 1.9e-57 226.5 217 54.8
PSO675G4719 Papaver somniferum HOM05D007112 ORTHO05D008930 2.5e-57 226.1 249 49.4
Psat4g208280 Pisum sativum HOM05D007112 ORTHO05D008930 7.4e-57 224.6 222 50.5
PSO732G0401 Papaver somniferum HOM05D007112 ORTHO05D008930 1.3e-56 223.8 247 48.6
Sp3g06430 Schrenkiella parvula HOM05D007112 ORTHO05D008930 2.1e-56 223.0 218 52.8
Ca_23159_v3 Cicer arietinum L. HOM05D007112 ORTHO05D008930 2.8e-56 222.6 222 52.7
Solyc09g047840.3 Solanum lycopersicum HOM05D007112 ORTHO05D008930 3.7e-56 222.2 227 49.8
CARHR082180 Cardamine hirsuta HOM05D007112 ORTHO05D008930 6.2e-56 221.5 224 52.7
Aqoxy5G04050 Aquilegia oxysepala HOM05D007112 ORTHO05D008930 8.1e-56 221.1 217 50.7
Carub.0003s0707 Capsella rubella HOM05D007112 ORTHO05D008930 3.1e-55 219.2 218 52.8
Sopen09g015950 Solanum pennellii HOM05D007112 ORTHO05D008930 3.1e-55 219.2 217 50.2
CANSAT01G1474 Cannabis sativa HOM05D007112 ORTHO05D008930 6.9e-55 218.0 243 51.0
THA.LOC104819012 Tarenaya hassleriana HOM05D007112 ORTHO05D008930 5.8e-54 214.9 234 48.3
Lsat_1_v5_gn_9_16901 Lactuca sativa HOM05D007112 ORTHO05D008930 7.6e-54 214.5 217 53.0
BraA05t22800Z Brassica rapa HOM05D007112 ORTHO05D008930 1.0e-53 214.2 218 51.4
Eucgr.K02360 Eucalyptus grandis HOM05D007112 ORTHO05D008930 2.2e-53 213.0 219 51.6
Thhalv10022158m.g Eutrema salsugineum HOM05D007112 ORTHO05D008930 2.2e-53 213.0 221 51.6
Hma1.2p1_1043F.1_g251290 Hydrangea macrophylla HOM05D007112 ORTHO05D008930 2.2e-53 213.0 129 76.0
CiPaw.14G038400 Carya illinoinensis HOM05D007112 ORTHO05D008930 6.5e-53 211.5 190 54.2
BolC5t34634H Brassica oleracea HOM05D007112 ORTHO05D008930 1.4e-52 210.3 218 50.9
unitig_60.g25572 Utricularia gibba HOM05D007112 ORTHO05D008930 4.2e-52 208.8 221 50.7
AT3G07525 Arabidopsis thaliana HOM05D007112 ORTHO05D008930 1.2e-51 207.2 220 49.5
Nn7g37436 Nelumbo nucifera HOM05D007112 ORTHO05D008930 1.6e-51 206.8 128 76.6
A05p40690 Brassica napus HOM05D007112 ORTHO05D008930 2.1e-51 206.5 218 49.5
Manes.13G056200 Manihot esculenta HOM05D007112 ORTHO05D008930 2.1e-51 206.5 129 73.6
BcaC05g29544 Brassica carinata HOM05D007112 ORTHO05D008930 3.5e-51 205.7 218 49.5
PGR044G1116 Punica granatum HOM05D007112 ORTHO05D008930 3.5e-51 205.7 235 46.4
Aa31LG5G18060 Aethionema arabicum HOM05D007112 ORTHO05D008930 1.3e-50 203.8 228 48.2
C05p59800 Brassica napus HOM05D007112 ORTHO05D008930 1.3e-50 203.8 216 50.9
SHI30551 Sapria himalayana HOM05D007112 ORTHO05D008930 1.8e-50 203.4 213 48.4
ATR0752G208 Amborella trichopoda HOM05D007112 ORTHO05D008930 6.7e-50 201.4 213 48.4
Zm00001eb425740 Zea mays HOM05D007112 ORTHO05D008930 5.7e-49 198.4 212 49.5
Os04g0497350 Oryza sativa ssp. japonica HOM05D007112 ORTHO05D008930 4.8e-48 195.3 196 51.5
MELO3C021125.2 Cucumis melo HOM05D007112 ORTHO05D008930 4.1e-47 192.2 126 68.3
HPP92_001291 Vanilla planifolia HOM05D007112 ORTHO05D008930 9.0e-47 191.0 214 47.2
MBI10_g35388_MAGBIO Magnolia biondii HOM05D007112 ORTHO05D008930 3.8e-45 185.7 255 42.7
Ah.11g050810 Amaranthus hybridus HOM05D007112 ORTHO05D008930 5.5e-44 181.8 228 43.9
CDE05G1497 Ceratophyllum demersum HOM05D007112 ORTHO05D008930 1.7e-37 160.2 127 56.7
CAN.G50.11 Capsicum annuum HOM05D007112 ORTHO05D008930 5.0e-37 158.7 117 63.2
DCAR_018609 Daucus carota HOM05D007112 ORTHO05D008930 1.9e-36 156.8 201 46.3
HanXRQChr03g0082541 Helianthus annuus HOM05D007112 ORTHO05D008930 3.7e-32 142.5 80 80.0
Mapoly0002s0314 Marchantia polymorpha HOM05D007112 ORTHO05D008930 1.5e-30 137.1 261 31.0
Haze_03375 Corylus avellana HOM05D007112 ORTHO05D008930 2.2e-29 133.3 151 47.7
AagrBONN_evm.TU.Sc2ySwM_344.2017 Anthoceros agrestis HOM05D007112 ORTHO05D008930 8.5e-29 131.3 185 40.5
Pp3c26_2050 Physcomitrium patens HOM05D007112 ORTHO05D008930 3.6e-27 125.9 199 37.2
Cpa.g.sc8.40 Carica papaya HOM05D007112 ORTHO05D008930 6.3e-24 115.2 137 44.5
SGA_v2.0_scaffold29G12307 Striga asiatica HOM05D007112 ORTHO05D008930 6.1e-19 98.6 147 40.1
EL10Ac5g10586 Beta vulgaris HOM05D007112 ORTHO05D008930 2.3e-18 96.7 67 64.2
SMO141G0021 Selaginella moellendorffii HOM05D007112 ORTHO05D008930 2.6e-17 93.2 204 32.4
EL10Ac5g10588 Beta vulgaris HOM05D007112 ORTHO05D008930 1.1e-15 87.8 62 66.1
Haze_03371 Corylus avellana HOM05D007112 ORTHO05D008930 5.3e-15 85.5 68 61.8
Haze_03374 Corylus avellana HOM05D000072 ORTHO05D000026 5.3e-15 85.5 68 61.8
MD10G1148000 Malus domestica HOM05D007112 ORTHO05D008930 1.2e-14 84.3 123 39.8
CDE05G2169 Ceratophyllum demersum HOM05D007112 ORTHO05D008930 5.0e-13 79.0 193 31.1
Nn7g37443 Nelumbo nucifera HOM05D007112 ORTHO05D008930 2.1e-11 73.6 63 54.0
TWI18G1453 Tripterygium wilfordii HOM05D007112 ORTHO05D008930 1.3e-08 64.3 69 40.6
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 4.5e-06 55.8 109 28.4
Haze_03378 Corylus avellana HOM05D007112 ORTHO05D008930 7.7e-06 55.1 35 65.7


User provided reference genes

Program Settings