Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005922 Camellia sinensis var. sinensis HOM05D006157 ORTHO05D007826 2.2e-76 288.9 145 100.0
CSS0004131 Camellia sinensis var. sinensis HOM05D006157 ORTHO05D007826 1.3e-36 156.8 137 65.0
Actinidia23263 Actinidia chinensis HOM05D006157 ORTHO05D007826 3.1e-22 109.0 147 46.9
Hma1.2p1_0718F.1_g208450 Hydrangea macrophylla HOM05D006157 ORTHO05D007826 1.6e-18 96.7 153 44.4
Potri.002G127800 Populus trichocarpa HOM05D006157 ORTHO05D007826 2.7e-18 95.9 147 40.8
Sabra14G0022700 Salix brachista HOM05D006157 ORTHO05D007826 2.7e-18 95.9 144 41.0
TWI56G1258 Tripterygium wilfordii HOM05D006157 ORTHO05D007826 6.0e-18 94.7 151 40.4
Potri.014G032300 Populus trichocarpa HOM05D006157 ORTHO05D007826 3.0e-17 92.4 147 40.8
Dinv35975 Davidia involucrata HOM05D006157 ORTHO05D007826 6.7e-17 91.3 134 46.3
Actinidia22616 Actinidia chinensis HOM05D006157 ORTHO05D007826 1.9e-16 89.7 146 43.2
Cpa.g.c24415.4 Carica papaya HOM05D006157 ORTHO05D007826 6.3e-15 84.7 147 39.5
Cfa018525 Carpinus fangiana HOM05D006157 ORTHO05D007826 1.1e-14 84.0 144 43.1
Ciclev10002442m.g Citrus clementina HOM05D006157 ORTHO05D007826 1.2e-13 80.5 146 37.0
vmacro21540 Vaccinium macrocarpon HOM05D006157 ORTHO05D007826 1.5e-13 80.1 138 40.6
Haze_17545 Corylus avellana HOM05D006157 ORTHO05D007826 2.0e-13 79.7 147 41.5
Haze_17554 Corylus avellana HOM05D006157 ORTHO05D007826 2.0e-13 79.7 147 41.5
Duzib116G0710 Durio zibethinus HOM05D006157 ORTHO05D007826 1.0e-12 77.4 147 37.4
Lj4C53T12 Lonicera japonica HOM05D006157 ORTHO05D007826 1.7e-12 76.6 139 39.6
PGSC0003DMG400036180 Solanum tuberosum HOM05D006157 ORTHO05D007826 1.7e-12 76.6 142 38.7
Ca_13302_v3 Cicer arietinum L. HOM05D006157 ORTHO05D007826 2.2e-12 76.3 148 37.2
Gorai.005G103500 Gossypium raimondii HOM05D006157 ORTHO05D007826 2.9e-12 75.9 144 36.8
QL02p005407 Quercus lobata HOM05D006157 ORTHO05D007826 2.9e-12 75.9 148 35.8
Gohir.A06G017000 Gossypium hirsutum HOM05D006157 ORTHO05D007826 5.0e-12 75.1 140 34.3
Gohir.D06G015100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 6.5e-12 74.7 140 34.3
Rhsim06G0048100 Rhododendron simsii HOM05D006157 ORTHO05D007826 6.5e-12 74.7 133 39.1
VMungo1309G0335 Vigna mungo HOM05D006157 ORTHO05D007826 6.5e-12 74.7 142 37.3
Gorai.010G017900 Gossypium raimondii HOM05D006157 ORTHO05D007826 8.5e-12 74.3 140 34.3
Gohir.A03G079324 Gossypium hirsutum HOM05D006157 ORTHO05D007826 1.1e-11 73.9 141 35.5
Gohir.D02G092100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 1.1e-11 73.9 144 36.8
TAR628G1181 Trochodendron aralioides HOM05D006157 ORTHO05D007826 1.1e-11 73.9 135 36.3
Nitab4.5_0001101g0070 Nicotiana tabacum HOM05D006157 ORTHO05D007826 1.4e-11 73.6 142 36.6
Glyma.04G037500 Glycine max HOM05D006157 ORTHO05D007826 2.5e-11 72.8 134 36.6
Nitab4.5_0000686g0050 Nicotiana tabacum HOM05D006157 ORTHO05D007826 2.5e-11 72.8 142 36.6
CANSAT54G0006 Cannabis sativa HOM05D006157 ORTHO05D007826 5.5e-11 71.6 137 34.3
Lsat_1_v5_gn_4_124041 Lactuca sativa HOM05D006157 ORTHO05D007826 7.2e-11 71.2 151 37.7
RcHm_v2.0_Chr6g0307431 Rosa chinensis HOM05D006157 ORTHO05D007826 7.2e-11 71.2 153 35.9
MD15G1085000 Malus domestica HOM05D006157 ORTHO05D007826 2.1e-10 69.7 148 37.2
Nitab4.5_0004184g0060 Nicotiana tabacum HOM05D006157 ORTHO05D007890 2.7e-10 69.3 147 35.4
Prupe.1G438800 Prunus persica HOM05D006157 ORTHO05D007826 2.7e-10 69.3 146 38.4
ECA232G2668 Erigeron canadensis HOM05D006157 ORTHO05D007826 4.6e-10 68.6 140 39.3
Solyc04g079170.4 Solanum lycopersicum HOM05D006157 ORTHO05D007826 6.1e-10 68.2 141 34.0
Sopen04g032780 Solanum pennellii HOM05D006157 ORTHO05D007826 6.1e-10 68.2 141 34.0
Manes.18G032700 Manihot esculenta HOM05D006157 ORTHO05D007826 7.9e-10 67.8 137 38.7
Lj5g0002869 Lotus japonicus HOM05D006157 ORTHO05D007826 1.0e-09 67.4 155 36.1
Sed0015883 Sechium edule HOM05D006157 ORTHO05D007826 1.8e-09 66.6 150 32.7
Manes.05G171900 Manihot esculenta HOM05D006157 ORTHO05D007826 2.3e-09 66.2 150 37.3
Manes.05G171901 Manihot esculenta HOM05D006157 ORTHO05D007826 2.3e-09 66.2 150 37.3
FAN15G3536 Fragaria x ananassa HOM05D006157 ORTHO05D007826 3.0e-09 65.9 152 34.9
ClCG08G015710 Citrullus lanatus HOM05D006157 ORTHO05D007826 3.9e-09 65.5 146 30.8
MELO3C010885.2 Cucumis melo HOM05D006157 ORTHO05D007826 3.9e-09 65.5 146 31.5
Phvul.009G063700 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 3.9e-09 65.5 134 34.3
Glyma.06G038400 Glycine max HOM05D006157 ORTHO05D007826 5.1e-09 65.1 134 33.6
Peaxi162Scf00528g00414 Petunia axillaris HOM05D006157 ORTHO05D007826 6.7e-09 64.7 146 32.9
CsaV3_2G028070 Cucumis sativus L. HOM05D006157 ORTHO05D007826 8.8e-09 64.3 146 30.8
MSTRG.25101 Avicennia marina HOM05D006157 ORTHO05D007826 1.1e-08 63.9 134 34.3
TPR.G13684 Trifolium pratense HOM05D006157 ORTHO05D007826 2.0e-08 63.2 150 33.3
Atru.chr13.647 Acer truncatum HOM05D006157 ORTHO05D007826 3.3e-08 62.4 159 35.8
VMungo0647G0691 Vigna mungo HOM05D006157 ORTHO05D007826 3.3e-08 62.4 126 34.1
Nn5g30225 Nelumbo nucifera HOM05D006157 ORTHO05D007826 1.7e-07 60.1 138 32.6
Peaxi162Scf00064g00125 Petunia axillaris HOM05D006157 ORTHO05D007826 1.7e-07 60.1 145 32.4
Medtr1g019800 Medicago truncatula HOM05D006157 ORTHO05D007826 2.2e-07 59.7 150 34.0
GSVIVG01009525001 Vitis vinifera HOM05D006157 ORTHO05D007826 2.2e-07 59.7 135 31.9
Glyma.14G081800 Glycine max HOM05D006157 ORTHO05D007826 3.7e-07 58.9 132 37.9
Glyma.17G243500 Glycine max HOM05D006157 ORTHO05D007826 3.7e-07 58.9 135 35.6
Sed0006561 Sechium edule HOM05D006157 ORTHO05D007826 3.7e-07 58.9 146 29.5
HanXRQChr09g0267931 Helianthus annuus HOM05D006157 ORTHO05D007826 6.3e-07 58.2 153 33.3
FAN20G0621 Fragaria x ananassa HOM05D006157 ORTHO05D007826 8.2e-07 57.8 153 32.7
Nitab4.5_0000453g0220 Nicotiana tabacum HOM05D006157 ORTHO05D007890 1.1e-06 57.4 147 32.0
Phvul.001G020800 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 1.1e-06 57.4 127 35.4
Nn1g05836 Nelumbo nucifera HOM05D006157 ORTHO05D007826 1.4e-06 57.0 137 31.4
FvH4_2g34660 Fragaria vesca HOM05D006157 ORTHO05D007826 4.1e-06 55.5 154 31.2
SGA_v2.0_scaffold14G07032 Striga asiatica HOM05D006157 ORTHO05D007826 5.3e-06 55.1 138 31.2
THA.LOC104806945 Tarenaya hassleriana HOM05D006157 ORTHO05D007826 5.3e-06 55.1 151 32.5
Cc10_g04340 Coffea canephora HOM05D006157 ORTHO05D007826 9.1e-06 54.3 174 29.9


User provided reference genes

Program Settings