Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 4.9e-82 307.8 156 100.0
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 3.1e-36 155.6 122 66.4
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 1.5e-30 136.7 120 57.5
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 4.3e-30 135.2 125 60.0
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 1.7e-29 133.3 119 60.5
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 4.8e-29 131.7 120 59.2
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 2.4e-28 129.4 122 56.6
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 4.1e-28 128.6 120 56.7
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 1.3e-26 123.6 121 60.3
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 3.8e-26 122.1 120 56.7
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 3.8e-26 122.1 120 56.7
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 1.1e-25 120.6 125 54.4
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 1.4e-25 120.2 132 56.1
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 1.9e-25 119.8 121 56.2
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 1.6e-24 116.7 101 58.4
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 2.1e-24 116.3 118 50.8
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 2.1e-24 116.3 122 54.1
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 2.1e-24 116.3 123 52.8
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 2.7e-24 115.9 119 52.9
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 6.1e-24 114.8 125 49.6
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 1.0e-23 114.0 120 48.3
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 3.0e-23 112.5 119 51.3
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 3.0e-23 112.5 119 51.3
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 5.1e-23 111.7 128 50.0
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 5.1e-23 111.7 84 61.9
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 6.7e-23 111.3 117 51.3
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 8.8e-23 110.9 117 53.8
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 1.1e-22 110.5 122 51.6
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 1.1e-22 110.5 120 49.2
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 1.3e-21 107.1 127 49.6
Sabra09G0043500 Salix brachista HOM05D007963 ORTHO05D009967 1.3e-21 107.1 112 54.5
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 1.7e-21 106.7 71 71.8
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 1.8e-20 103.2 97 56.7
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 2.0e-19 99.8 121 49.6
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 2.2e-18 96.3 126 47.6
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 2.9e-18 95.9 92 56.5
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 5.0e-18 95.1 100 51.0
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 5.0e-18 95.1 119 49.6
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 8.5e-18 94.4 73 58.9
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 1.1e-17 94.0 115 48.7
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 1.1e-17 94.0 126 46.8
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 7.2e-17 91.3 120 48.3
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 9.4e-17 90.9 89 52.8
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 1.6e-16 90.1 122 45.9
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 1.4e-15 87.0 130 43.1
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 1.4e-15 87.0 126 42.9
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 3.9e-15 85.5 119 43.7
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 3.9e-15 85.5 119 43.7
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 8.8e-15 84.3 122 43.4
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 8.8e-15 84.3 82 53.7
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 1.5e-14 83.6 124 41.9
Os03g0217000 Oryza sativa ssp. japonica HOM05D007963 ORTHO05D009967 3.3e-14 82.4 47 74.5
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 4.4e-14 82.0 125 44.0
Zm00001eb400040 Zea mays HOM05D007963 ORTHO05D009967 1.7e-13 80.1 47 72.3
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 2.8e-13 79.3 94 45.7
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 4.8e-13 78.6 56 62.5
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 6.3e-13 78.2 108 44.4
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 1.9e-09 66.6 102 44.1
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 4.2e-09 65.5 45 62.2
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 4.2e-09 65.5 45 62.2
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 5.5e-09 65.1 83 45.8
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 1.2e-08 63.9 65 53.8
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 1.2e-08 63.9 66 48.5
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 1.2e-08 63.9 65 53.8
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 1.6e-08 63.5 80 43.8
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 1.6e-08 63.5 80 43.8
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 2.1e-08 63.2 60 46.7
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 2.1e-08 63.2 80 46.2
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 2.1e-08 63.2 67 50.7
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 2.7e-08 62.8 57 56.1
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 2.7e-08 62.8 108 37.0
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 2.7e-08 62.8 80 46.2
Pp3c24_5190 Physcomitrium patens HOM05D025110 ORTHO05D009967 3.6e-08 62.4 82 42.7
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 4.7e-08 62.0 77 45.5
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 4.7e-08 62.0 77 45.5
AT3G52070 Arabidopsis thaliana HOM05D007963 ORTHO05D009967 6.1e-08 61.6 57 54.4
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 6.1e-08 61.6 65 52.3
ATR0332G088 Amborella trichopoda HOM05D007963 ORTHO05D009967 1.8e-07 60.1 38 65.8
C04p40920 Brassica napus HOM05D007963 ORTHO05D009967 2.0e-06 56.6 75 45.3
AagrBONN_evm.TU.Sc2ySwM_228.4962 Anthoceros agrestis HOM05D025110 ORTHO05D009967 7.5e-06 54.7 34 64.7


User provided reference genes

Program Settings